BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38670.1
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943829 jgi|Araly1|943829|scaffold_700058.1 1365 0.0
> Ahg943829 jgi|Araly1|943829|scaffold_700058.1
Length=887
Score = 1365 bits (739), Expect = 0.0
Identities = 833/880 (95%), Gaps = 0/880 (0%)
Strand=Plus/Plus
Query 108 TCGAATCCTCCTGTAACAGCAATGATGAATCGGATCCTCTTGTTTATGATCCTGGCTTTT 167
|||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TCGAATCCTCTTGTAACAACAATGATGAATCGAATCCTCTTGTTTATGATCCTGGCTTTT 60
Query 168 GTCTCATCTCTTTCAGAAGTTGAGCCAATTTCGTTCAAGATCACGAATCGTTGCCGGAAC 227
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 GTCTTATCTCTTTCAGAAGTTGAGCCGATTTCGTTCAAGATCACGAATCGTTGCCGGAAC 120
Query 228 ACGATATGGCCCGGTTTGCTCTCTGGTGCTAACTCAGCGCCGCTCCCCACAACTGGCTTT 287
|||| |||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 121 ACGACATGGCCTGGTTTGCTCTCCGGTGCTAACTCCGCGCCGCTCCCCACAACTGGCTTT 180
Query 288 CGTCTCTCTAGAGGAAAATCTAAAACCGTCGCAATACCAGAGTCGTGGTCCGGTCGTCTC 347
||||| || |||||||||||||||| |||||||||||||| ||| |||||||||||||||
Sbjct 181 CGTCTTTCCAGAGGAAAATCTAAAATCGTCGCAATACCAGCGTCCTGGTCCGGTCGTCTC 240
Query 348 TGGGCACGAACCTTGTGTTCACAAGATCGGAGTTCCGGTTCTTTCGTCTGCTTAACCGGA 407
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 TGGGCACGAACCTTGTGTTCACAAGATCGGAGCTCCGGTTCTTTCGTCTGCTTAACCGGA 300
Query 408 GATTGCGGCTCGGGAAAAGTCGAATGTTCAGGCTCCGGAGCTAAACCTCCAGCAACTCTC 467
|| || ||||| ||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 301 GACTGTGGCTCAGGAAAAGTCGAATGTACAGGCTCCGGTGCTAAACCTCCAGCAACCCTC 360
Query 468 GCCGAGTTTACTCTCAACGGCACAGGAGGACTAGATTTTTACGACGTTAGCCTCGTCGAC 527
|||||||||||||||||||| || |||||||| || || |||||||||||||||||||||
Sbjct 361 GCCGAGTTTACTCTCAACGGTACCGGAGGACTTGACTTCTACGACGTTAGCCTCGTCGAC 420
Query 528 GGTTACAATCTCCCGATGCTAATCTTGCCCAAGAAAATCGTCATTGGAGGATGCGGAGCC 587
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 421 GGTTACAACCTCCCGATGCTAATCTTGCCCAAGAAAATCGTCTTTGGAGGATGCGGAGCC 480
Query 588 ACCGGGTGTCTCGTGGACTTGAACGGCGCGTGTCCCAGAGACCTAAAGCTGGTGACGCGT 647
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 481 ACCGGGTGTCTCGTGGACTTGAACGGCGCGTGTCCCAGAGACCTAAAGCTGGTGGCGCGT 540
Query 648 GGGAATGGGAACGGTGTTGCTTGCCGTAGCGCGTGCGAGGCATTCGGAGACCCAAGGTAT 707
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 GGGAAAGGGAACGGTGTGGCTTGCCGTAGCGCGTGCGAGGCATTCGGGGACCCAAGGTAT 600
Query 708 TGCTGCAGCGATGCGTACGCCACGCCGGACACGTGTCAGCCTTCGGTTTACTCGCTCTTC 767
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 601 TGCTGCAGCGATGCGTACGCGACGCCGGACACGTGTCAGCCTTCGGTTTACTCGCTCTTC 660
Query 768 TTTAAGCATGCGTGCCCACGAGCATACAGCTACGCCTATGACGATAAGACGAGCACTTAC 827
||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 661 TTTAAACATGCGTGCCCGCGAGCCTACAGCTACGCCTATGACGACAAGACTAGCACTTAC 720
Query 828 ACTTGCGCCACCGGAGCCGATTACTTCATCATCTTCTGTCCGCCACCGTATACAAGCGAG 887
||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||
Sbjct 721 ACTTGCGCCACCGGAGCCGATTATTTCATCATCTTCTGTCCGCCGCCGTACACAAGCGAG 780
Query 888 AAGCTTTTAGGATCGAGGAAAGATGGTGCAACACTGCCACTAGTAAACAAGAGCATGATT 947
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 781 AAGCTTTTAGGATCGAGGAAAGATGGGGCAACGCTGCCGCTAGTAAACAAGAGCATGATT 840
Query 948 CATTTGCCGCATCCGCACAGCAGCTGAGCCATCTTCTTAT 987
||||||| ||||||||||||||||||||||| || |||||
Sbjct 841 CATTTGCGGCATCCGCACAGCAGCTGAGCCACCTCCTTAT 880
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5