BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38680.1
Length=1299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943830 jgi|Araly1|943830|scaffold_700059.1 841 0.0
> Ahg943830 jgi|Araly1|943830|scaffold_700059.1
Length=630
Score = 841 bits (455), Expect = 0.0
Identities = 585/644 (91%), Gaps = 24/644 (4%)
Strand=Plus/Plus
Query 313 TTAAGAGATTCCAATCAAAATGAGCGGAGACAACGGCGGTGGTGAGAGGCGCAAAGGCTC 372
|||||||||| | |||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 4 TTAAGAGATTTCGATCAGAATGAGCGGAGACAACGGTGGTGGTGAGAGGCGCAAAGGCTC 63
Query 373 CGTCAAGTGGTTTGATACCCAGAAGGGTTTCGGCTTCATCACTCCTGACGACGGTGGCGA 432
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CGTCAAGTGGTTTGACACCCAGAAGGGTTTCGGCTTCATCACTCCTGACGACGGTGGCGA 123
Query 433 CGATCTCTTCGTTCACCAGTCCTCCATCAGATCTGAGGGTTTCCGTAGCCTCGCTGCCGA 492
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 124 CGATCTCTTCGTTCACCAGTCCTCCATCAGATCTGAGGGTTTCCGAAGCCTAGCTGCCGA 183
Query 493 AGAAGCCGTAGAGTTCGAGGTTGAGATCGACAACAACAACCGTCCCAAGGCCATCGATGT 552
|| || || ||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 184 TGAGGCTGTCGAGTTCGAGGTTGAGATGGACAACAACAGCCGTCCCAAGGCCATCGATGT 243
Query 553 TTCTGGACCCGACGGCGCTCCCGTCCAAGGAAACAGCGGTGGTGGTTCATCTGGCGGACG 612
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 244 GTCTGGACCCGACGGCGCTCCCGTCCAAGGAAACAGCGGTGGT--T-CATCTGGCGGACG 300
Query 613 CGGCGGTTTCGGTGGAGGAAGAGGAGGTGGACGCGGATCTGGAGGTGGATACGGCGGTGG 672
|||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 301 TGGCGGTTTCGGTGGCGGAAGAGGTGGTGGCCGCGGATCTGGAGGTGGATATGGCGGTGG 360
Query 673 CGGTGGTGGATACGGAGGAAGAGGAGGTGGTGGTCGAGGAGGCAGCGACTGCTACAAGTG 732
||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 361 ---TGGTGGATACGGAGGAAGAGGAGGTGGC---CGAGGAGGCAACGACTGCTACAAGTG 414
Query 733 TGGTGAGCCCGGTCACATGGCGAGAGACTGTTCTGAaggcggtggaggttacggaggagg 792
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 415 TGGTGAGCCCGGTCACATGGCGAGAGACTGTTCTGACGGCGGTGGAGGTTACGGAGGAGG 474
Query 793 cggcggtggctacggaggtggaggcggatacggcggaggaggtggtggttacggaggtgg 852
||| ||||| |||||||| ||||||| ||| | | | || |||||| ||
Sbjct 475 CGGTGGTGGTTACGGAGG---AGGCGGA---GGC--A--AC-TAC-GG---CGGAGGAGG 519
Query 853 tggccgtggaggtggtggcggcggGGGAAGCTGCTACAGCTGTGGCGAGTCGGGACATTT 912
||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 520 CGGCCGCGGAGGAGGCGGAGGCGGGGGAAGCTGCTACAGCTGTGGCGAGTCGGGACATTT 579
Query 913 CGCCAGGGATTGCACCAGCGGTGGACGTTAAAACCAACGCCGGT 956
||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 580 CGCCAGGGATTGCACCAGCGGTGGACGTTGAAACAAACGCCGGT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48568596258
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5