BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38690.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490635 jgi|Araly1|490635|fgenesh2_kg.7__68__AT4G38690.1 1531 0.0
> Ahg490635 jgi|Araly1|490635|fgenesh2_kg.7__68__AT4G38690.1
Length=1016
Score = 1531 bits (829), Expect = 0.0
Identities = 955/1016 (94%), Gaps = 7/1016 (1%)
Strand=Plus/Plus
Query 33 AGAGAGAGCAAAGGGAAAGGGTTAATCCT---CAG----CAATGGGCTCTCACCTTTCCA 85
||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||
Sbjct 1 AGAGAGAGCAAAGGGAAAGGGTTCATCCTCACCAGTCACCAATGGGCTCTCACCTTTCCA 60
Query 86 AACAACTCGAGCGGCGAAAAGCCATCTCCACGGAGAAGAAAGCCCTCACCGATCTCGAGA 145
|||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||
Sbjct 61 AACAACTCGAGCGGCGAAAAGCAATCTCCACGGAAAAGAAAGCCCTCATCGATCTCGAGA 120
Query 146 AATCGTGCGGCTGCGAGTTTCCGGGGTGTGATTACATGCCTTCCGATCGTAAAAACTGGA 205
||| ||||||||||||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 121 TATCTTGCGGCTGCGAGTTTCCTGGCTGTGATTACATGCCTTCAGATCGTAAAAACTGGA 180
Query 206 TGGCCGGCGTTGGACCTGAAAAGCTTCACATCAACAAGATCGTCTGGCCTGGGACGCACG 265
|| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 181 TGTCCGGCGTTGGACCTGAAAAGCTTCACATCAACAAGATCGTCTGGCCAGGCACGCACG 240
Query 266 ACTCTGCCACCAACAAAATCGGTATCCGATTCGTGTCTCGTCCCTTTGCTAAGTGCCAAT 325
|||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||
Sbjct 241 ACTCCGCCACCAACAAAATCGGTATACGATTCGTGTCTCGTCCTTTTGCTCAGTGCCAAT 300
Query 326 CTCTCTCCATCTATAACCAGCTCGTGGCGGGTACTCGAGTCCTTGACATTCGTGTCCAAG 385
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 301 CTCTCTCCATCTATAACCAGCTCGTGGCTGGTACTCGAGTCCTTGACATTCGTGTCCAAG 360
Query 386 AAGATCGCCGTGTATGCCACGGTATCCTCAAGACTTATAGTGTCGACGTTGTCTTGGCCG 445
||||||||||||| |||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 361 AAGATCGCCGTGTCTGCCACGGTATCCTCAAGACTTATAGCGTCGACGTTGTATTAGCCG 420
Query 446 ATCTCAAACGGTTTCTATCCGAAACAGAGTCGGAGATTGTCATTCTTGAGATCAGAACAG 505
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 ATCTCAAACGGTTTCTGTCCGAAACAGAGTCCGAGATTGTCATTCTTGAGATCAGAACAG 480
Query 506 AGTTTGGACACGAAGACCCACCGGAGTTTGATAAGTATCTTGTGGAACAGCTTGGAGAGC 565
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 481 AGTTTGGACACGAAGATCCACCGGAGTTCGATAAGTATCTTGTGGAACAGCTTGGAGAGC 540
Query 566 ATCTGATTCACCAGGACGATCACGTGTTCTCCAAGACAGTCGCTGAGCTGCTTCCCAAGA 625
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ATCTCATTCACCAGGACGATCACGTGTTCACCAAGACAGTCGCTGAGCTGCTTCCCAAGA 600
Query 626 GAGTGATCTGCGTTTGGAAACCGAGGAAATCGCCTCAGCCTAAGCATGGTGATCCTCTTT 685
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||| || |
Sbjct 601 GAGTGATCTGCGTTTGGAAACCTAGGAAATCGCCTCAGCCTAAGCATGGCGATCCGCTGT 660
Query 686 GGAGCGCTGGTTACCTTAAAGACAATTGGATCGATACAGATCTTCCATCGACCAAATTCG 745
|||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 661 GGAGTGCCGGTTACCTGAAAGACAATTGGATCGATACGGATCTTCCATCGACCAAATTCG 720
Query 746 AGAGCAACATCAAGCATTTGAGCCAGCAGCAACCAGCTACTTCAAGGAAATTCTTTTACC 805
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 721 AGAGCAACATCAAGCATTTGAGCCAGCAGCAACCGGCTACTTCCAGGAAATTCTTCTACA 780
Query 806 GGGTGGAGAACACAGTGACGCCGCAGCCCGATAACCCAATAATGTGTGTAAAACCGGTGA 865
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 GGGTGGAGAACACTGTGACGCCGCAGCCCGATAACCCGATAATGTGTGTAAAACCGGTGA 840
Query 866 CTAAGAGGATACATTGCTACGCCAAGGTATTCATCATAGAGTGTGTAAAAAGAGGATGTG 925
|||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 841 CTAAGAGGATCCATTGCTACGCCAAGGTGTTCATCATCGAGTGTGTAAAGAGAGGATGTG 900
Query 926 CTGATAAACTGCAGATATTCTCAACTGATTTCATAGATAATGAATTTGTTGATGCTTGCG 985
|||| || |||||||||||||| || |||| ||||||||| |||||||||||||||||||
Sbjct 901 CTGACAAGCTGCAGATATTCTCGACGGATTACATAGATAAAGAATTTGTTGATGCTTGCG 960
Query 986 TTGGGCTCACCTTTGCGAGAGCTGAAGGTAAGGCCTGAGGAATGAGCGTGTGGAGA 1041
|||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 961 TTGGGCTCACATTTGCGAGAGCTGAAGGCAAGGCCTGAGGAATGAGCGTGTGTAGA 1016
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5