BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38700.1 Length=719 Score E Sequences producing significant alignments: (Bits) Value Ahg943833 jgi|Araly1|943833|scaffold_700062.1 765 0.0 > Ahg943833 jgi|Araly1|943833|scaffold_700062.1 Length=616 Score = 765 bits (414), Expect = 0.0 Identities = 538/598 (90%), Gaps = 7/598 (1%) Strand=Plus/Plus Query 3 ATTCCTTAAGTTTATA-AATTATGAAGAGCACATTAATAATATTTTTCACACTCTGTTTG 61 ||| ||||| ||| || ||||||||||| |||| | ||| ||||||||||||||||||| Sbjct 1 ATTTCTTAA-TTTTTATAATTATGAAGAACACACTCGTAACATTTTTCACACTCTGTTTG 59 Query 62 AGCATGGCCGTTAT-G--GCGCGTCACGAATCCTACTATGGCAACACCAAACCGGCTAAA 118 ||| |||||||| | | ||||||||||| ||||||| ||||| |||||||||||||| Sbjct 60 AGCGTGGCCGTTCTGGCAGCGCGTCACGAGTCCTACTGCGGCAAAACCAAACCGGCTAAT 119 Query 119 CTGAATGAGGAGAAAGTGACACGTGTCAGATTTTATCTCCATGATACTCTCAGTGGCCAA 178 ||||| ||||| ||||||||||||||| |||| ||||| | ||||||||||||||||||| Sbjct 120 CTGAAGGAGGAAAAAGTGACACGTGTCCGATTCTATCTTCGTGATACTCTCAGTGGCCAA 179 Query 179 AATCCTACCGCCGTTAGAATCGCACATGCAAATCTAACCGGTGGCTCAGCTTCGCCGGTA 238 || |||||||||||||||||||||||||| ||||| ||||| ||||||| || ||||| Sbjct 180 AACCCTACCGCCGTTAGAATCGCACATGCCAATCTCACCGGCGGCTCAGAGTCTCCGGTG 239 Query 239 GGTTTTGGAAGCCTGTTTGTGATAGACGATCCGCTCACCGTCGGGCCGGAGAAACACTCG 298 |||||||||||||| |||| ||||||||||| ||||||||||| ||||||||||| ||| Sbjct 240 GGTTTTGGAAGCCTCTTTGCAATAGACGATCCACTCACCGTCGGACCGGAGAAACATTCG 299 Query 299 AAAGAGATCGGGAATGGTCAAGGGATGTATGTCTCCGGGTGCAAAGACTTGAGCAAATTC 358 |||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 300 AAAGAGATAGGGAACGGTCAAGGGATGTATGTCTCCGGGAGCAAAGAGATGAGCAAATTC 359 Query 359 ACGATCGTCATGTACGCT-GATTTGGCTTTCACGGCAGGGAAGTTTAATGGAAGCTCGAT 417 |||| || ||||||| | ||||||||||||||| | ||||||||||||||||||||||| Sbjct 360 TCGATTGTGATGTACG-TCGATTTGGCTTTCACGACGGGGAAGTTTAATGGAAGCTCGAT 418 Query 418 CAGTATCTTCTCGAGGAATCCGGTGGCGGAAGAGGTCGGAGAGCGAGAAATCGCGATTGT 477 ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct 419 CAGTATCTTCTCGAGGAATCCGGTGGCGGAAGAGGCCGGAGAGCGAGAGATCGCGATAGT 478 Query 478 TGGTGGCCGTGGGAAATTCAGAATGGCGAGAGGTTTTGTCAAAGTAAAAACAAATAAGAT 537 |||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||| Sbjct 479 TGGTGGCCGTGGGAAATTCAGAATGGCGAGAGGTTTCGTCAAAATAAAAACACATAAGAT 538 Query 538 TGACATGAAGACTGGTGATGCTGTTCTCCGATATGATGCTACTGTTTATCATTATTAA 595 ||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 539 TGACATGAAAACCGGTGATGCTGTTCTCCGATATGATGCTACTGTTTACCATTATTAA 596 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26457304398 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5