BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38700.1
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943833 jgi|Araly1|943833|scaffold_700062.1 765 0.0
> Ahg943833 jgi|Araly1|943833|scaffold_700062.1
Length=616
Score = 765 bits (414), Expect = 0.0
Identities = 538/598 (90%), Gaps = 7/598 (1%)
Strand=Plus/Plus
Query 3 ATTCCTTAAGTTTATA-AATTATGAAGAGCACATTAATAATATTTTTCACACTCTGTTTG 61
||| ||||| ||| || ||||||||||| |||| | ||| |||||||||||||||||||
Sbjct 1 ATTTCTTAA-TTTTTATAATTATGAAGAACACACTCGTAACATTTTTCACACTCTGTTTG 59
Query 62 AGCATGGCCGTTAT-G--GCGCGTCACGAATCCTACTATGGCAACACCAAACCGGCTAAA 118
||| |||||||| | | ||||||||||| ||||||| ||||| ||||||||||||||
Sbjct 60 AGCGTGGCCGTTCTGGCAGCGCGTCACGAGTCCTACTGCGGCAAAACCAAACCGGCTAAT 119
Query 119 CTGAATGAGGAGAAAGTGACACGTGTCAGATTTTATCTCCATGATACTCTCAGTGGCCAA 178
||||| ||||| ||||||||||||||| |||| ||||| | |||||||||||||||||||
Sbjct 120 CTGAAGGAGGAAAAAGTGACACGTGTCCGATTCTATCTTCGTGATACTCTCAGTGGCCAA 179
Query 179 AATCCTACCGCCGTTAGAATCGCACATGCAAATCTAACCGGTGGCTCAGCTTCGCCGGTA 238
|| |||||||||||||||||||||||||| ||||| ||||| ||||||| || |||||
Sbjct 180 AACCCTACCGCCGTTAGAATCGCACATGCCAATCTCACCGGCGGCTCAGAGTCTCCGGTG 239
Query 239 GGTTTTGGAAGCCTGTTTGTGATAGACGATCCGCTCACCGTCGGGCCGGAGAAACACTCG 298
|||||||||||||| |||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 240 GGTTTTGGAAGCCTCTTTGCAATAGACGATCCACTCACCGTCGGACCGGAGAAACATTCG 299
Query 299 AAAGAGATCGGGAATGGTCAAGGGATGTATGTCTCCGGGTGCAAAGACTTGAGCAAATTC 358
|||||||| ||||| |||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 300 AAAGAGATAGGGAACGGTCAAGGGATGTATGTCTCCGGGAGCAAAGAGATGAGCAAATTC 359
Query 359 ACGATCGTCATGTACGCT-GATTTGGCTTTCACGGCAGGGAAGTTTAATGGAAGCTCGAT 417
|||| || ||||||| | ||||||||||||||| | |||||||||||||||||||||||
Sbjct 360 TCGATTGTGATGTACG-TCGATTTGGCTTTCACGACGGGGAAGTTTAATGGAAGCTCGAT 418
Query 418 CAGTATCTTCTCGAGGAATCCGGTGGCGGAAGAGGTCGGAGAGCGAGAAATCGCGATTGT 477
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct 419 CAGTATCTTCTCGAGGAATCCGGTGGCGGAAGAGGCCGGAGAGCGAGAGATCGCGATAGT 478
Query 478 TGGTGGCCGTGGGAAATTCAGAATGGCGAGAGGTTTTGTCAAAGTAAAAACAAATAAGAT 537
|||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||
Sbjct 479 TGGTGGCCGTGGGAAATTCAGAATGGCGAGAGGTTTCGTCAAAATAAAAACACATAAGAT 538
Query 538 TGACATGAAGACTGGTGATGCTGTTCTCCGATATGATGCTACTGTTTATCATTATTAA 595
||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 539 TGACATGAAAACCGGTGATGCTGTTCTCCGATATGATGCTACTGTTTACCATTATTAA 596
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26457304398
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5