BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38710.2
Length=1761
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490636 jgi|Araly1|490636|fgenesh2_kg.7__69__AT4G38710.1 944 0.0
> Ahg490636 jgi|Araly1|490636|fgenesh2_kg.7__69__AT4G38710.1
Length=1627
Score = 944 bits (511), Expect = 0.0
Identities = 621/672 (92%), Gaps = 16/672 (2%)
Strand=Plus/Plus
Query 65 agaagaagaaTCCAATCATGGCGGCTGCTGTATCATCTGTTTGGGCAAAGCCTGGTGCTT 124
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAGACGAATCCAACCATGGCGGCTGCTGTATCATCTGTTTGGGCAAAGCCTGGTGCTT 60
Query 125 GGGCTCTTGAAGCCGAGGAACATGAAGCTGAGCTCAAACAACAA-CCCTCTCCCACCAAC 183
|||||||||||||||||||||| |||||||| ||||| |||||| ||| ||||| ||| |
Sbjct 61 GGGCTCTTGAAGCCGAGGAACACGAAGCTGAACTCAAGCAACAAGCCC-CTCCCTCCACC 119
Query 184 CAGAAATCCTCTGCCGAAGATTCCTCCGATTTCCCTTCCTTAGCCGCTGCAGCGACCACC 243
|||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 120 CAGAAATCCTCTGCCGGAGATTCCTCCGATTTCCCTTCCTTAGCCGCTGCTGCCACCACC 179
Query 244 AAAACGAAGAAGAAGAAGGGCCAAACCATCTCTCTTGCTGAATTCGCTACCTACGGTACT 303
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| ||
Sbjct 180 AAAACGAAGAAGAAGAAGGGCCAAACCATATCTCTCGCCGAATTCGCTACCTACGGTTCT 239
Query 304 GCTAAGGCAAAGCCGGCTCCACAGACGGAGCGTCTCACTCAGGCTGAGCTGGTCGCTCTT 363
|||||||| || ||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 240 GCTAAGGCG--GC-GGC---ACAGACGGAGCGTCTCACTCAGGCTGAGCTGGTATCTCTT 293
Query 364 CCGACCGGTCCACGTGAACGCTCTGCTGAGGAGCTTGATAGATCTAAGCTTGGAGGTGGT 423
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 294 CCGACCGGTCCCCGTGAACGCTCTGCTGATGAGCTTGATAGATCTAAGCTTGGAGGTGGT 353
Query 424 TTCCGGAGCTATGGTGGTGGTCGTTATGGAGATGAGTCGTCCAGCTCGAGGTGGGGTTCG 483
|||||||||||||| || |||||||| |||||||| |||||||||||| |||||||||||
Sbjct 354 TTCCGGAGCTATGGCGGGGGTCGTTACGGAGATGAATCGTCCAGCTCGCGGTGGGGTTCG 413
Query 484 TCTAGGGTTTCGGAGGATGGGGAAAGGAGAGGCGGTGGATTCAACCGGGATAGGGAACCT 543
||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||
Sbjct 414 TCTAGGGTTTCGGAGGATGGGGAAAGGAGAGGCGGTGGATTGAACAGGGACAGGGAACCT 473
Query 544 AGCAGGGATTCGGGTCCGTCGCGTGCGGATGAGGATGATAACTGGGCCGCCGCCAAGAAA 603
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 474 AGTAGGGATTCGGGTCCGTCGCGTGCGGATGAGGATGATAACTGGGCTGCCGCCAAGAAA 533
Query 604 CCAATTAGCGGAAACGGATTCgagagaagagagagagGCAGC-GGCGGAGGATTCTTCGA 662
|||||| |||||| ||| ||||||||||||||| ||||| || |||||||||||||||||
Sbjct 534 CCAATTGGCGGAAGCGGTTTCGAGAGAAGAGAGCGAGGC-GCCGGCGGAGGATTCTTCGA 592
Query 663 ATCTCAGTCTCAGTCCAAGGCTGATGAAGTCGATAGCTGGGTCTCCACTAAGCCATCGGA 722
||||||||| || | |||||||||||| ||||||||||||||| |||||||||||||
Sbjct 593 ATCTCAGTC-CA----A-GGCTGATGAAGTTGATAGCTGGGTCTCCTCTAAGCCATCGGA 646
Query 723 GCCCCGGAGATT 734
||||||||||||
Sbjct 647 GCCCCGGAGATT 658
Score = 658 bits (356), Expect = 0.0
Identities = 544/631 (86%), Gaps = 27/631 (4%)
Strand=Plus/Plus
Query 763 AGATTTGAGAAAAGGGGAAGTTTTGAATCCTTGTCTAGAAACCGGGATTCTCAATACGGT 822
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 654 AGATTTGAGAAAAGAGGAAGTTTTGAATCCTTGTCTAGAAACCGGGATTCTCAGTACGGC 713
Query 823 GGTGGTGGTGGTTCTGAATCGGATACCTGGGGAAGAAGAAGAGAAGAAAGCGGTGCTGCT 882
||||| ||| ||||||| || || |||||||| || ||||||||||| ||||||| |||
Sbjct 714 GGTGGAGGTAGTTCTGATTCAGACACCTGGGGGAGGAGAAGAGAAGAGAGCGGTGGTGCA 773
Query 883 AATGGC-TCGCCACCACCGAGC-GGTGGTTCACGCCCAAGATTGGTGTTACAGCCACGTA 940
|| ||| | ||||||||| | | | ||| ||||| || ||||||||||||||||||||||
Sbjct 774 AACGGCGT-GCCACCACCCA-CTGTTGGCTCACGGCCTAGATTGGTGTTACAGCCACGTA 831
Query 941 CACTTCCCGTGGCCGTTGTGGAGGTCGTGAAGCCGGAGAGTCCGGTCTTGGTCATTGTGG 1000
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 832 CACTTCCCGTGGCCGTTGTGGAGGTCGTTAAGCCGGAGAGTCCGGTCTTGGTCATTGTCG 891
Query 1001 AGAAACCTAAAGGTGCTAATCCTTTTGGGAACGCAAGACCTAGAGAGGAAGTTCTGGCTG 1060
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 AGAAACCTAAAGGTGCCAATCCTTTTGGGAACGCAAGACCTAGAGAGGAAGTTCTGGCTG 951
Query 1061 AGAAAGGCCAGGATTGGAAAGAGATTGACGAGAAGCTCGAGGCTGAAAAGCTTAAGGACA 1120
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 952 AGAAAGGCCAGGATTGGAAAGAGATTGACGAGAAGCTCGAGGCTGACAAGCTTAAGGACG 1011
Query 1121 TTGCTGCAGCCATGGAGAAGCCTAATGAGAAATCTACAGGGAAGATGGG---CTTTGGTC 1177
||||||||||||| ||||||||| ||||||||||| ||||||||||||| ||||||||
Sbjct 1012 TTGCTGCAGCCATTGAGAAGCCTGATGAGAAATCTCCAGGGAAGATGGGGGGCTTTGGTC 1071
Query 1178 TTGGCAATGGCCGTAAAGACGAGGAACGTATTGAAAGAAGTTGGAGGAAAAGTTTTTCTC 1237
||||||||||||| |||||||| ||||||| ||| ||||||||||||||||| |
Sbjct 1072 TTGGCAATGGCCGCAAAGACGATGAACGTACTGAGAGAAGTTGGAGGAAAAGCACGGAGC 1131
Query 1238 TACAT-TCATACATGGAAGTTGATGTCTTGAACACGGAGCATTCTGA-GGAGGATG-CTC 1294
| || | | | |||| | ||| ||| | || | | || ||| || | ||
Sbjct 1132 -A-ATCTGAGG-A-GGAACCAGCTGTA--GAAGA-GG--C-TAA-GAAGGAAGA-GACT- 1178
Query 1295 AAGAGGAGGAA-CCAGCTGTAGAAGGGGCAAAGAAGGAAGAGACTGAGGACAAACCGGCT 1353
|||| | || || |||||||||| ||| ||||||||||||| |||| || |||| |||
Sbjct 1179 --GAGG-GCAAACCGGCTGTAGAAGAGGCTAAGAAGGAAGAGAGTGAGAACGAACCAGCT 1235
Query 1354 GTAGAAGAGGCTAAGAAGGAAGAAACTGAGG 1384
||||||||||||||||||||||| || ||||
Sbjct 1236 GTAGAAGAGGCTAAGAAGGAAGAGACGGAGG 1266
Score = 505 bits (273), Expect = 5e-142
Identities = 380/427 (89%), Gaps = 26/427 (6%)
Strand=Plus/Plus
Query 1337 CTGAGGACAAACCGGCTGTAGAAGAGGCTAAGAAGGAAGAAACTGAGGGTGAACAGGCTG 1396
||||||| |||| |||||||||||||||||||||||||| |||||||| ||| |||||
Sbjct 1135 CTGAGGAGGAACCAGCTGTAGAAGAGGCTAAGAAGGAAGAGACTGAGGGCAAACCGGCTG 1194
Query 1397 TAGAAGAGGCTAAGAAGGAAGAGACTGGTG-GCGAACCGGCTGTAGAAGAGGCAAAGAAG 1455
|||||||||||||||||||||||| | | | |||||| |||||||||||||| ||||||
Sbjct 1195 TAGAAGAGGCTAAGAAGGAAGAGAGT-GAGAACGAACCAGCTGTAGAAGAGGCTAAGAAG 1253
Query 1456 GAAGAGACGGAGGACAAAATCTAAAGAGTCAAAAGGCATTTTTGTGGATTGTGATAGT-- 1513
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GAAGAGACGGAGGACAAAATCTAAAGAGTCAAAAGGCATTTTTGTGGATTGTGATAGAGC 1313
Query 1514 ---TTGGGTTCTTGAAGTTTAGCTTCTGAGAATTTGTGTTGTTTAATTTGGATAAGTTAA 1570
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 AAGTTGGGTTCTCGAAGTTTAGCTTCTGAGAATTTGTGTTGTTTAATTTGGATAAGTTAA 1373
Query 1571 --GTTGTGTGGGGGAACTCTAGAGAAAATTTTGGTAGGGTCtttttttttATAATATCTC 1628
||||||||||| ||||| | |||||||||||||||||||||||| ||||| ||||
Sbjct 1374 AAGTTGTGTGGGG-AACTCGATAGAAAATTTTGGTAGGGTCTTTTT----ATAATCTCTC 1428
Query 1629 TCTGTCTCtt--t-tt-tttaccacatactctgttgcaa-tttttagggttttggggtgt 1683
||||||||| | || ||| | | ||||||||||||| |||||||||||||||| |||
Sbjct 1429 TCTGTCTCTCAGTCTTGTTTGC-A--TACTCTGTTGCAAATTTTTAGGGTTTTGGG-TGT 1484
Query 1684 cttttat-ttttt-aCGAGTTGTACAATTTCATTATTGGTTTAAATCTGTCTTTGAATTT 1741
||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1485 CTTTTATATTTTTTACGAGTTGTACAATTTCATTATTGGTTTAC-TCTTTCTTTGAATTT 1543
Query 1742 GGGAGCG 1748
|||||||
Sbjct 1544 GGGAGCG 1550
Score = 176 bits (95), Expect = 5e-43
Identities = 116/126 (92%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 1297 GAGGAGGAACCAGCTGTAGAAGGGGCAAAGAAGGAAGAGACTGAGGACAAACCGGCTGTA 1356
|||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 1137 GAGGAGGAACCAGCTGTAGAAGAGGCTAAGAAGGAAGAGACTGAGGGCAAACCGGCTGTA 1196
Query 1357 GAAGAGGCTAAGAAGGAAGAAACTGAGGGTGAA-CAGGCTGTAGAAGAGGCTAAGAAGGA 1415
|||||||||||||||||||| | |||| ||| || |||||||||||||||||||||||
Sbjct 1197 GAAGAGGCTAAGAAGGAAGAGAGTGAGAACGAACCA-GCTGTAGAAGAGGCTAAGAAGGA 1255
Query 1416 AGAGAC 1421
||||||
Sbjct 1256 AGAGAC 1261
Score = 111 bits (60), Expect = 1e-23
Identities = 79/87 (91%), Gaps = 6/87 (7%)
Strand=Plus/Plus
Query 1379 CTGAGG-GTGAA-CAGGCTGTAGAAGAGGCTAAGAAGGAAGAGACTG-GTGGCGAACCGG 1435
|||||| | ||| || ||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 1135 CTGAGGAG-GAACCA-GCTGTAGAAGAGGCTAAGAAGGAAGAGACTGAG-GGCAAACCGG 1191
Query 1436 CTGTAGAAGAGGCAAAGAAGGAAGAGA 1462
||||||||||||| |||||||||||||
Sbjct 1192 CTGTAGAAGAGGCTAAGAAGGAAGAGA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66086575075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5