BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38730.1
Length=1464
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490637 jgi|Araly1|490637|fgenesh2_kg.7__70__AT4G38730.1 1659 0.0
> Ahg490637 jgi|Araly1|490637|fgenesh2_kg.7__70__AT4G38730.1
Length=1140
Score = 1659 bits (898), Expect = 0.0
Identities = 960/991 (97%), Gaps = 0/991 (0%)
Strand=Plus/Plus
Query 231 CGATGGTGTCGGACAATGAGATGGGTCTGGTATTAGCTGTGTCGTCGAGCGTCTTCATAG 290
|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 21 CGATGGTGTCGGACAATGAGATGGGTCTGGCGTTAGCTGTGTCGTCGAGTGTCTTCATAG 80
Query 291 GTTCCAGCTTCATTTTGAAGAAGAAAGGTCTCAAGCGCGCTGCTGCTAATGGCACCCGCG 350
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 81 GTTCCAGCTTCATTTTGAAGAAGAAAGGTCTCAAGCGTGCTGCTGCTAATGGCACCCGCG 140
Query 351 CTGGTTTCGGAGGTTATACATATTTGTTAGAGCCACTTTGGTGGGTAGGCTTGGTAACAA 410
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 CTGGGTTCGGAGGTTATACATATTTGTTAGAGCCACTTTGGTGGGTAGGCTTGGTAACAA 200
Query 411 TGACTTTTGGAGAAATTGCTAACTTTGTGGCTTACGTTTATGCACCTGCTGTACTAGTCA 470
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 201 TGACTTTTGGAGAAATTGCTAACTTTGTGGCTTACGTTTATGCGCCGGCTGTACTAGTCA 260
Query 471 CTCCTCTTGGCGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTGTTAGACG 530
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 CTCCTCTTGGTGCATTAAGTATAATCATCAGTGCTGTTTTGGCACATTTCTTGTTAGACG 320
Query 531 AAAAACTTAGGAAAATGGGAGTTTGGGGATGTGTTTGTTGCATTGTGGGCTCAGTTATGA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 AAAAACTTAGGAAAATGGGAGTTTGGGGATGTGTTTGTTGCATTGTGGGCTCAGTTATGA 380
Query 591 TCGTCATACACGCACCTCAGGAGCAGACTCCCAATTCTGTAGAAGAAATCTGGAAACTAG 650
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 381 TCGTCATACACGCACCTCAGGAGCAGACTCCCAATTCTGTTGAAGAAATCTGGAAACTAG 440
Query 651 CAATGCAACCAGCTTTTCTAATTTACGTAGCCATATCAATGTCGATAGTCCTTGCTTTGA 710
||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 441 CAATGCAGCCAGCTTTTCTAATTTACGTAGCCATATCAATGTCGATTGTCCTGGCTTTGA 500
Query 711 TTCTCTACTGTGAACCTCTCTGCGGCCAAACCAACATTCTTGTGTATATCGGAATTTGTT 770
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 501 TTCTGTACTGTGAACCTCTCTGCGGCCAAACCAACATTCTTGTTTATATCGGAATTTGTT 560
Query 771 CATTGATGGGTTCTCTCACAGTTATGAGCATCAAGGCTGTAGGGATTGCCATAAAGTTAA 830
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 561 CATTGATGGGTTCTCTTACAGTTATGAGCATAAAGGCTGTAGGGATTGCGATAAAGTTAA 620
Query 831 CATTTGAAGGGATAAACCAGATCTGGTATCCAGAGACTTGGTTTTTTGCCATGGTTGCAG 890
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 621 CATTTGAAGGGATAAACCAGATTTGGTATCCAGAGACTTGGTTTTTTGCCATGGTTGCAG 680
Query 891 CAATCTGTGTTGTTATGCAAATGATTTACCTCAACAAGGCGCTGGACACATTCAACGCAG 950
|||| ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 681 CAATATGTGTGGTTATGCAAATGATTTACCTAAACAAGGCGCTGGACACTTTCAACGCAG 740
Query 951 CAATTGTTTCTCCAATCTATTATGTGATGTTCACAACACTCACAATTGTCGCTAGTGCAA 1010
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 741 CAATTGTTTCTCCAATTTATTATGTGATGTTCACAACACTCACAATTGTTGCTAGTGCAA 800
Query 1011 TCATGTTCAAGGACTGGAATGGGCAAAACACAGACAGCATAGCCTCTGAGATTTGTGGAT 1070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 801 TCATGTTCAAGGACTGGAATGGGCAAAACACAGACAGCATAGCCTCTGAGATTTGTGGAT 860
Query 1071 TCATCACAGTGCTTACAGGAACGGTTATACTCCATTCCACGAGAGAAGAGGAACAAGCTT 1130
|||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||
Sbjct 861 TCATCACAGTGCTTACAGGAACAGTTATACTCCATGCGACAAGAGAAGAGGAACAAGCTT 920
Query 1131 CGCCACGACGAATGAGATGGCAGGATTCAGGGAAGAGCTTTGACGAAGAACATTTGACAA 1190
|||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 921 CGCCTCGAAGAATGAGATGGCAAGATTCAGGGAAGAGCTTTGACGAAGAACATTTGACAA 980
Query 1191 GTTTGTACAGTCCTGAATATTAGGAAGGTAA 1221
|||||||||||||||||||||||||||||||
Sbjct 981 GTTTGTACAGTCCTGAATATTAGGAAGGTAA 1011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54773772310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5