BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38760.1
Length=6023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943837 jgi|Araly1|943837|scaffold_700066.1 2959 0.0
Ahg888078 jgi|Araly1|888078|Al_scaffold_0007_64 2089 0.0
> Ahg943837 jgi|Araly1|943837|scaffold_700066.1
Length=3257
Score = 2959 bits (1602), Expect = 0.0
Identities = 1775/1859 (95%), Gaps = 10/1859 (1%)
Strand=Plus/Plus
Query 4066 TCTCTTGAAGAAAGTGCAGCTGCGGAAAGGAAAATCCCTTCTCGAGTCACTCTTTTAAGC 4125
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1404 TCTCTTGAAGAAAGTGCAGCTGCGGAAAGGAAAATCCCTTCTCGAGTCACTCTTTCAAGC 1463
Query 4126 ATTGATAAAGTATGCCGAAAATT-TTGCACCACGGTTGATTCACTTGCCTCTCTCTGGGA 4184
||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 1464 ATTGATATAGTATGCCGAAAATTCTT-CACCACAGTTGATTCACTTGCCTCTCTCTGGGA 1522
Query 4185 TGCACCCAAGATTGTGTTTGATATTCTTACAGCACAGGCAGACTTGCTATCCCGCCTATT 4244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1523 TGCACCCAAGATTGTGTTTGATATTCTTACAGCACAGGCAGACTTGCTATCCCGCCTCTT 1582
Query 4245 GAAATCCGCAAAGAAAAATCTTTCATTATCTGTATGTGCACTTGTCCTGAGAAATGTTGG 4304
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct 1583 GAAATCCGCAAAGAAAAATCTTTCATTATCTATATGTGTACTTGTCCTGAGAAATGTGGG 1642
Query 4305 GCCTGGCCTCAAGATCCTTGGTAGTTTGAGGCATTCAAATGCTATATTGAAGAAGACGAT 4364
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1643 GCCTAGCCTCAAAATCCTAGGTAGTTTGAGGCATTCAAATGCTATATTGAAGAAGACGAT 1702
Query 4365 AAACCTCCTGCTTGAGGTGCTGCTCCTGGTTGTGGGTTTTGGTTCAGACAACTCAAACTC 4424
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1703 AAACCTCCTGCTTGAGGTGCTGCTCCTGGTTGTGGGTTTTGGTTCAGACAACTCCAACTC 1762
Query 4425 GAGTGGGATGGGACATATGGTGCTAGCCAAAGATTTTGCAGAAATATCTGATGCTACAAT 4484
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1763 GAGTGGGATGGGACATATGGTGCTAGGCAAAGATTTTGCAGAAATATCTGATGCCACAAT 1822
Query 4485 TGGATTATTACCCCTTCTCTGCAACTTCATGGGGAATCCCGAGTACTTGACTCTCTGCCT 4544
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1823 TGGATTATTACCCCTTCTCTGCAACTTCATGGGGAATCCTGAGTACTTGACTCTCTGCCT 1882
Query 4545 GACCACAGTAGACTTGATTCTCAGGAA-TTTTTTGACGCCAGAGACATGGTTCCCTATTA 4603
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1883 GACCACAGTAGACTTGATTCTCA-GAACTTTTTTGACGCCAGAGACATGGTTCCCTATTA 1941
Query 4604 TACAGAGTCAACTCCGCTTGCAGCATGTTATTCTACAGCTTCAGGATAAGAAATCCACAA 4663
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1942 TACAAAGTCAACTCCGCTTGCAGCATGTTATTCTACAGCTTCAGGATAAGAAATCCACGG 2001
Query 4664 CATCCG-TTTCAGCAATACTAAAATTTTTCTTAACTATTGCTCAAGTTCATGGCGGTGCT 4722
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2002 CAT-CGCTTTCAGCAATACTAAAATTTTTCTTAACTATTGCTCAAGTTCATGGCGGTGCT 2060
Query 4723 CAGATGCTTCTAAATTCTGGATTTTTCTCGACTTTAAGAGCTTTGTTAATGGAGTTTCCG 4782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2061 CAGATGCTTCTAAATTCTGGATTTTTCTCGACTTTAAGAGCTTTGTTAATGGAGTTTACG 2120
Query 4783 GATGGAATGTCTACTTTGGTATCTGACAATGAAAAGGGCTCG-CTGCTAGAAAAGACAGA 4841
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 2121 GATGGAATGTCTACTTTGGTATCTGACAATGAAAAGGGCT-GACTGCTAGAAAAGACAGA 2179
Query 4842 AAAAACTCAGCATATCTGGGGAATCGGTTTGGCTGTGGTTACTGCCATGGTTCATTCTCT 4901
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2180 AAAACCTCAGCATATCTGGGGAATCGGTTTGGCTGTAGTTACTGCCATGGTTCATTCTCT 2239
Query 4902 AGGATCTGTTTCTGCAGGGGCTGATATTGTGGAGAGTGTCATATCTTACTTTTTCTTGGA 4961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2240 AGGATCTGTTTCTGCAGGGGCTGATATTGTGGAGAGTGTCATATCTTACTTTTTCTTAGA 2299
Query 4962 GAAAGGTTACATGATCTCATACTATCTCGCTGCACCAGATTTCCCTTCTGATGATCGTGA 5021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2300 GAAAGGTTACATGATCTCATACTATCTCGCTGCACCAGATTTCCCTTCTGATGATCGTGA 2359
Query 5022 CAAAGTGAGGCTACGAAGTCAACGGACGTGGACTTCCCTTGCTTATCTGAGAGTAACCGA 5081
||||||||| | ||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 2360 CAAAGTGAGACCACGAAGTCAACGGACTTGGACTTCCCTTGCTTATCTGAGAGAAACCGA 2419
Query 5082 GCATACTCTCCTTCTGCTGTGTGCATTAGCTAGCCATTGGAGATCATGGGTTAAAATTAT 5141
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2420 GCATACTCTCCTTCTGATGTGTGCATTAGCTAGCCATTGGAGATCATGGGTTAAAATTAT 2479
Query 5142 GAAGGATATGGATTCTCCATTAAGAGAAATGACAATACATCTCTTGGCCTTTATCAGCAA 5201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2480 GAAGGATATGGATTCTCCATTAAGAGAAATGACAATACATCTCTTGGCCTTTATCAGCAA 2539
Query 5202 AGGCGCTCAACGGCTTAGAGAGTCTCAGAGCCACATATCTCATCTGTTATGCCCTCCAGT 5261
||| |||||||| ||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2540 AGGTGCTCAACGCCTTAGAGAGTCTCAGAGTTTCACATCTCATCTGTTATGCCCTCCAGT 2599
Query 5262 AGCGAAAGAAGAGTTTGATTCCTGCAAAAGACCGTCTTTCATCAATACCAAACACGGATG 5321
|| ||||||||||||||||| ||||||||||| ||||||||||| | ||| ||||||||
Sbjct 2600 AGTAAAAGAAGAGTTTGATTCTTGCAAAAGACCATCTTTCATCAACAGCAAGCACGGATG 2659
Query 5322 GTTTTCGCTAGCACCTTTAGTTTGTGTTGGGAAACCCAAGATCACTGCAGTATCTATCTC 5381
|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2660 GTTTGCCCTAGCACCTTTAGTTTGTGTTGGGAAACCCAAGATCACTGCAGTATCAATCTC 2719
Query 5382 GACTGCTCTAGTTGTTAGGGGAGACACAACAGAACATCCTGGGTCTGTTCCTCAATCGCA 5441
| ||||||||||| | |||||| |||| |||||||||| |||||||||||||||||||||
Sbjct 2720 GGCTGCTCTAGTTATCAGGGGACACACTACAGAACATCTTGGGTCTGTTCCTCAATCGCA 2779
Query 5442 ATTTTCAGACTCAGTTGCGATACAGATATATAGAGTGGCTTCTCTATTGTTGAAATTTCT 5501
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2780 GTTTTCAGACTCAGTTGCGATACAGATATATAGAGTGGCTTCTCTATTGTTGAAATTTCT 2839
Query 5502 GTGCTTACAAGCAGAGGGTGTTGTTACGAGGGCAGAGGAAGTGGGATATGTCGATATTGC 5561
||| |||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 2840 GTGTTTACAAGCAGAGTGTGTTGTTACAAGGGCAGAGGAAGTGGGATATGTCGATCTTGC 2899
Query 5562 TCATTTCCCTGAGCTTCCAGAGCCGGAGATTTTACATGGTCTACAGGACCAAGCGACGGC 5621
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2900 CCATTTCCCTGAGCTTCCAGAGCCGGAGATTTTACATGGTCTACAGGACCAAGCCACGG- 2958
Query 5622 GA-TAGTCGCTGAGCTATGTGATAATTACAAATCCAAAGAGATTCCAGATGAAGTAAAGA 5680
|| |||| |||||||| ||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 2959 GAATAGTTGCTGAGCTTTGTGATAATTACAGATCCAAAGAGGTTCCAGATGAAGTAAAGA 3018
Query 5681 AGTTGTGCCTTATGCTGATCCAAACGACAGAGATGTCGTTATACTTGGAACTCTGTGTAG 5740
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 3019 AGTTGTGCCTTTTGCTGATCCAATCGACAGAGATGTCGTTATACTTGGAACTCTGTGTTG 3078
Query 5741 TTCAGGTTTGCAGGATCCATCCTGTATTTGGGCGTGTGGATAACTTCTCCAAAGACTTGA 5800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3079 TTCAGGTTTGCAGGATCCATCCTGTATTTGGGCGTGTGGATAACTTCTCCAAAGACTTGA 3138
Query 5801 AAAAACTAGTGAAAGCTGCTGAGGTGCATACCTACTTAGAACCGTCCATAGATTCACTGA 5860
|||| ||||||||||||||||| |||||| | ||||||||| ||||||| ||||||||||
Sbjct 3139 AAAAGCTAGTGAAAGCTGCTGAAGTGCATGCGTACTTAGAAACGTCCATGGATTCACTGA 3198
Query 5861 AGAAAATAGCTGCGTTTCTGTATCCTGGATCACTTTAGAAACAAAACAAACATGAGGAC 5919
||||||||||||||||||||||||| ||||| |||||| ||| |||| |||||| ||||
Sbjct 3199 AGAAAATAGCTGCGTTTCTGTATCCCGGATCGCTTTAGGAACGAAACTAACATGTGGAC 3257
Score = 1055 bits (571), Expect = 0.0
Identities = 618/641 (96%), Gaps = 2/641 (0%)
Strand=Plus/Plus
Query 2878 CAGCCTGCTCTTTTAGTGGCCATATTTGATTCAGACGAAGACTCAGATTCTAGCAACGTA 2937
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 405 CAGCCTGCTCTTTTAGTGGCCATATTTGATTCAGACGAAGACTCAGATGCTGGCAACTTA 464
Query 2938 AAACAGTCGCGCAAAGATGCCTCCTCAATTCCTGACTGGGCTTGTAAATCTCGCTTACTG 2997
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 465 AAACAGTCACGCAAAGATGCCTCCTCAATTCCTGACTGGGCTTGTAAATCTCGCTTATTG 524
Query 2998 CACACTATCCTGCAATATGTAGAGAGAGCAACCGATTTTGTCGATAGACACACAGATATA 3057
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 525 CACACTATCCTGCAATATGTAGAGAGAGCAACAGATTTTGTCGATAGATACACAGATATA 584
Query 3058 TTACTGGGTTTACTTGATTTCCTGAAAACCCTTTGGCAAGAGGCTGGCCAATACGCAAAT 3117
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 585 TTACTGGGTTTACTTGATTTCTTGAAAACCCTTTGGCAAGAGGCTGGCCAATACGCTAAT 644
Query 3118 ATGCTGGAACCGTTTAAGGCGTCAAAAAAGTTGTGGCAGGAATTTTCCGACATTATATCA 3177
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 645 ATGCTGGAACCGTTTAAGGCGTCAAAAAAGTTGTGGCAGGAATTTTCCAACATTATATCA 704
Query 3178 CAGGCTTCTAAGATAAAAGATTCGACGGTTGGAAGTTTAGGCAAGGAAGAAATCTCGAAA 3237
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 705 CAGGCGTCTAAGATAAAAGATTCCACGGTTGGAAGTTTAGGCAAGGAAGAAATCTCGAAA 764
Query 3238 TTGTTAGTGAAATATCAGTGTCAGGCTTCTGTTTTGGAAATTATGGCTTGCAACATGTTT 3297
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 765 TTGTTTGTGAAATATCAGTGTCAGGCTTCTGTTTTGGAAATTATGGCTTCCAACATGTTT 824
Query 3298 TTGTACAAGAAGTTGCTGTTTGCGGAGTCACTTAAAAAGCCATGTGTGGAGACTAAAAAG 3357
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 825 TTGTACAAGAAGTTGCTGTTTGCGGAGTCACTTAAAAAGCCATGTGTGGAGCCAAAAAAG 884
Query 3358 ACAG-CAAGTAATGGAGTATCTCCACCCAAATTAACTTGGACAGCTGATTCAGATCCCAA 3416
|| | ||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 885 AC-GTCAAATAATGCAGTATCTCCATCCAAATTAACTTGGACAGCTGATTCAGATCCCAA 943
Query 3417 GGATATCTTTTCAAAATGGTGTGACATATCTGTTTTGGATGGCATTATCCAGTCAGTTTC 3476
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 944 GGATATCTTTTCAAAATGGTGTGACGTATCTGTTTTGGATGGCCTTATCCAGTCAGTTTC 1003
Query 3477 TTCCTTAGATGGTGAAAGTGAAATAAACTTCCAAGCAAAGG 3517
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 TTCCTTAGATGGTGAAAGTGAAATAAACTTCCAAGCAAAGG 1044
Score = 553 bits (299), Expect = 6e-156
Identities = 318/327 (97%), Gaps = 2/327 (1%)
Strand=Plus/Plus
Query 3740 GAAAACTTGAGGGTCGTGATATCCCAACTGGTCCTTTCAAAGAGCTTTTCCAGTTTCTAG 3799
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1048 GAAAACTTGAGGGTCGTGATATCCCAACTGGTCCATTCAAAGAGCTTTTCCAGTTTCTAG 1107
Query 3800 TGGAGACGAGCTTTTGGGAGAAATATAAACAGAAAACTAATAAGGATGTAAATATGGCTT 3859
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1108 TTGAGTCGAGCTTTTGGGAGAAATATAAACAGAAAACTAATAAGGATGTAAATATGGCTT 1167
Query 3860 TGGGGGACTGTTTGTTTGACACTCAGCAAATACAGACTGAATTAGGTATTGATATTTGGG 3919
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 TGGAGGACTGTTTGTTTGACACTCAGCAAATACAGACTGAATTAGGTATTGATATTTGGG 1227
Query 3920 ATTTCTCTGAGTGGAAGACATCTAAAACAACGGCAGAGGAAATGTTGAAC-TACATGCAG 3978
||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 1228 ATTTCTCTGAGTGGAAGACATCTAAAACAACTGCAGAGGAAATGTTG-ACTTACATGCAG 1286
Query 3979 AGAGCAAACTCGATGGTTTTACTCTCAACTTCGCAGCTCTCTGTTTTGCATGCATTGATT 4038
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1287 AGAGCAAATTCGATGGTTTTACTCTCAACTTCGCAGCTCTCTGTTTTGCATGCATTGATT 1346
Query 4039 TCCGTCTTGATACTTTATGAGGATAAT 4065
||||||||||||||||| |||||||||
Sbjct 1347 TCCGTCTTGATACTTTACGAGGATAAT 1373
Score = 505 bits (273), Expect = 2e-141
Identities = 289/297 (97%), Gaps = 0/297 (0%)
Strand=Plus/Plus
Query 2147 CAGTTCTGGAATTTACCATGCAACTTGTGGAGGGGGGACTAGAGAATGATGTAGTTTTTG 2206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 CAGTTCTGGAATTTACCATGCAACTTGTGGAGGGGGGACTAGAGAATGATGTAGTTTTTG 63
Query 2207 CTCTAGTTGTTTTCTCGTTGCAGTATATTCTTGCTAGCCATGAGTATTGGAAATACAATC 2266
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 CTCTAGTTGTTTTCTCGTTGCAGTATATTCTTGCTAGCCATGAGTATTGGAAATACAATA 123
Query 2267 ATGGAAATATGCGTTGGAAAGTGACACTAAAAGTCATCGAGTTGATGAAAACGTGTCTCA 2326
|||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||
Sbjct 124 ATGGAAGTATGCGTTGGAAAGTGACACTAAAGGTCATTGAGGTGATGAAAACGTGTCTCA 183
Query 2327 GATTCAGTAAATTCTCCACAAAGCTGAGGGATGTTCTCCTTGATATTTTACTGAACGATG 2386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 GATTCAGTAAATTCTCCACAAAGCTGAGGGATGTTCTCCTTGATATTTTACTGAACGATG 243
Query 2387 CCTCTGTTCACAGTGCTCTTTTCAGAATAATTTGTACGACTACGCAAAATTTAGAGA 2443
||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 244 CCTCTGTTCACAGCGCTCTTTTCCGAATCATTTGTACGACTACGCAAAATTTAGAGA 300
Score = 185 bits (100), Expect = 3e-45
Identities = 104/106 (98%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 2664 TATACAGGTTTGTGCTGCTCAAGTGCTGTCAAAGTTATTTGCCTTGGCAGAATCATCACA 2723
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TATACAGGTTTATGCTGCTCAAGTGCTGTCAAAGTTATTTGCCTTGGCAGAATCATCACA 361
Query 2724 ACTCTATATAATAAGCAATGCAGGCTTTGGTCTAGACAATAAACAG 2769
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 GCTCTATATAATAAGCAATGCAGGCTTTGGTCTAGACAATAAACAG 407
> Ahg888078 jgi|Araly1|888078|Al_scaffold_0007_64
Length=1743
Score = 2089 bits (1131), Expect = 0.0
Identities = 1201/1236 (97%), Gaps = 0/1236 (0%)
Strand=Plus/Plus
Query 726 GGGGATTCTTTCAGGTTCATATAATTTTAGCAAGCTGGCTGTGTCAGTTGAAGCACAACA 785
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 504 GGGGATTCTTTCAGGTTCATATAATTTTAGAAAGCTGGCTGTGTCAGTTGAAGCACAGCA 563
Query 786 TTCTGCATGTCGTGTTCAAATTCAGTTGCTGATGATTCTTATAGAAACATTGGATATGGA 845
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 564 TTCTGCATGTCGTGTTCAAATTCAGTTGCTGATGATTCTTATAGAAACGTTGGATATGGA 623
Query 846 GAATCTGTTACAAATGGTTCACGACGGAGTACCTTTCAGGTCTGGCACTTGTGTCTTTTC 905
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 624 GAATCTGTTACAAATGGTTCCCGACGGAGTACCTTTCAGGTCTGGCACTTGTGTCTTTTC 683
Query 906 CATTGTTGACGTTCAAGAGATGGATGCAACAATTTCAAGCCTTAACACTTCTGAAGTAAA 965
||||||||| || |||||||||||||||||||| |||||||| ||||||| |||||||||
Sbjct 684 CATTGTTGATGTCCAAGAGATGGATGCAACAATCTCAAGCCTCAACACTTTTGAAGTAAA 743
Query 966 CGAAGCAGGACCTCTCGTCCTGGCATGGGCAGTATTCCTGTGTCTTATTTCATCTCTTCC 1025
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||
Sbjct 744 AGAAGCAGGACCTCTCGTCCTGGCTTGGGCAGTATTTCTGTGTCTTATTTCATCACTTCC 803
Query 1026 TGGGAAGGAGGAAAGTCCTTTCCTGATGGATATTGATCACGTGAGCTATGTTCATCAAGC 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 804 TGGGAAGGAGGAAAGTCCTTTCCTGATGGATATTGATCACGTGAGCTATGTTCATCAAGC 863
Query 1086 CTTTGAGGCAGCATCCTTGAGCTATTTCCTTGAAATCCTTCAAAGTAATCTATTGAATGA 1145
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 TTTTGAGGCAGCATCCTTGAGCTATTTCCTTGAAATCCTTCAAAGTAATCTATTGAATGA 923
Query 1146 TTTCGATGGACCAATTTCTGGTCATCGTAGTGTCGTGAGGACTTTTATTTCAGCATTTAT 1205
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 924 TTTTGATGGACCAATCTCTGGTCATCGTAGTGTCGTGAGGACTTTTATTTCAGCATTTAT 983
Query 1206 TGCATCTTATGAGATCAATCTTCAGCTGGAAGATGGCACCCTCGAGTTGATACTGGACAT 1265
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 TGCGTCTTATGAGATCAATCTTCAGCTGGAAGATGGCACCCTCGAGTTGATACTGGACAT 1043
Query 1266 CCTCTCTAAGGTTTATCAAGGAGAGGAGTCCCTCTGTTGTCAGTTTTGGGATCGAAAAAG 1325
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1044 CCTCTGTAAGGTTTATCAAGGAGAGGAGTCCCTCTGTAGTCAGTTTTGGGATCGAAAAAG 1103
Query 1326 TTTTGTTGATGGCCCTATCCGGTGTCTCCTCTTTGATCTGGAGAGTGAATTTCCATTCAG 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 TTTTGTTGATGGCCCTATCCGGTGTCTCCTCTTTGATCTGGAGAGTGAATTTCCATTCAG 1163
Query 1386 AAGTGCTGAATTCATTCGCCTCTTGTCGTCCCTGAGTGAAGGAAGTTGGCCTGCTGAATG 1445
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 AAGTGCTGAATTCATTCGTCTCTTGTCGTCCCTGAGTGAAGGAAGTTGGCCTGCTGAATG 1223
Query 1446 TGTATACAACTTTCTGGATAAATCAGTCGGGGTATCAACCTTATTTGATATTACTAGTGA 1505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1224 TGTATACAACTTTCTGGATAAATCAGTCGGGGTATCAACCTTATTTGATATTACTAGTGA 1283
Query 1506 CTCTCCAGCGGATGATGCCTCTCAACTTGTTGAAACTTCCCGGCCGTTGCATATTCCAGG 1565
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1284 CTCTCCAGCGGATGAGGCCTCTCAACTTATTGAAACTTCCCGGCCGTTGCATATTCCAGG 1343
Query 1566 TCTCGAAGGTTTAGTTATTCCCAGTAATACTCGTGGGCGAATTCTGAGAGTAATCAGTGA 1625
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1344 TCTTGAAGGATTAGTTATTCCCAGTAATACTCGTGGGCGAATTCTGAGAGTAATCGGTGA 1403
Query 1626 AAATACTGTCCTTGTACGGTGGGAGTATTCGCTATCCGGCATAATTGTGTTGATCATCCG 1685
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1404 AAATACTGTCCTTGTACGGTGGGAGTATTCGCTATCCGGCGTAATTGTGTTGATCATCCG 1463
Query 1686 TTTGGCCAATAAACTCTACATTGGTAACAATCGTGAAGCTTTTGTGACTCTGGAGCTACT 1745
|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1464 TTTGGCCAATGGACTCTACATTGGTAACAATCGTGAATCTTTTGTGACTCTGGAGCTACT 1523
Query 1746 TCGTCGGATGGTGACATTTAACAAGGCCGTATGTTTCTCCTTACTGAATATCAGCCACTT 1805
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1524 TCGTCGGATGGTGACATTTAACAAGGCCGTATGTTTCTCCTTACTGAATATGAGCCACTT 1583
Query 1806 CTTTTATGTTCAAGAATCTTATGTGAATGGGAAGATGGAAAGTGATGTGAGGGTGGTTGA 1865
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 CTTTTATGTTCACGAATCTTATGTGAATGGGAAGATGGAAAGTGATGTGAGGGTGGTTGA 1643
Query 1866 TATAATTTGTAATTCAGTCAGAAGCCTGACTTTTGACTCTGGCGGTGCCGCTGTGATGGC 1925
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1644 TATAATTTGCAATTCAGTCAGAAGCCTGACTTTTGACTCTGGCGGTGCAGCTGTGATGGC 1703
Query 1926 AATGGCTATTGATATCTTAGCTAAACTACTGCGATG 1961
||||||||||||||||||||||| ||| ||||||||
Sbjct 1704 AATGGCTATTGATATCTTAGCTAGACTTCTGCGATG 1739
Score = 394 bits (213), Expect = 4e-108
Identities = 227/234 (97%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 157 ATGTTCAAGCCACCGAGTGAGAAATCAAAAGAAGCTTTGAATTCGGATCTAGTCAAAATT 216
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGTTCAAGCCACCGAGTGAGAAATCAAAAGAAGCTTTGAATTCGGATGTAGTCAAAATT 60
Query 217 AAGGAGCACCAGTTGGTGATAAAGCCCCAATTGAAAGATAAAGCGCTTCGAATCAGCTCT 276
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 AAGGAGCACCAGTTGGTGATAAAGCCCCAGTTGAAAGATAAAGCGCTTCGAATCAGCTCT 120
Query 277 CATCTGAATCTAGATGAAATCCAATCATACATCCTCGTGGAAAGATCTATGGAGCAGGAA 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CATCTGAATCTAGATGAAATCCAATCATACATCCTCGTGGAAAGATCTATGGAGCAGGAA 180
Query 337 TATGGAACAACTGACTCGGTAGCTCAAGAACTAACTCAAGAATTCATTGACATG 390
|||||||| ||||||||||| ||||||||| || ||||||||||||| ||||||
Sbjct 181 TATGGAACCACTGACTCGGTTGCTCAAGAATTAGCTCAAGAATTCATAGACATG 234
Score = 270 bits (146), Expect = 7e-71
Identities = 199/221 (90%), Gaps = 18/221 (8%)
Strand=Plus/Plus
Query 379 TTCATTGACATGATACTGCTTCAGTATTACATACAGCGCCAGTGCCTACTAAAGTGTACA 438
||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TTC-TTGA-A-GATACTGCTTCAGTATTACATACAGCGCCAGTGCCTACTAAAGTGTACA 346
Query 439 AAGCGTATTCTCATACATGC---A----T----TATATGCGCCAAGAGAGGAAAGTTCAA 487
|||||||||||||||||||| | | ||||||||||||| ||||||||| |||
Sbjct 347 AAGCGTATTCTCATACATGCATAATTTGTACAGTATATGCGCCAAGTGAGGAAAGTACAA 406
Query 488 TTAAGGAAGAAGCTGTAAAGCTGATCTCAGATGGGCTTGAAAGACGACAATCATCCGTTC 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 407 TTAAGGAAGAAGCTGTAAAGCTGATCTCAGATGGGCTTGAAAGACGACAATCATCAGTT- 465
Query 548 TT-GAGGACCT-TTTGTCCTCTTGTTTTCCAAAGAATATGG 586
|| |||||||| ||| ||||||||||||||| |||||||||
Sbjct 466 TTCGAGGACCTGTTT-TCCTCTTGTTTTCCACAGAATATGG 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 228193207708
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5