BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38790.1
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490643 jgi|Araly1|490643|fgenesh2_kg.7__76__AT4G38790.1 1574 0.0
Ahg932042 jgi|Araly1|932042|scaffold_400030.1 869 0.0
> Ahg490643 jgi|Araly1|490643|fgenesh2_kg.7__76__AT4G38790.1
Length=1033
Score = 1574 bits (852), Expect = 0.0
Identities = 959/1009 (95%), Gaps = 14/1009 (1%)
Strand=Plus/Plus
Query 1 ACCTTTTTCACTTTTGCCGagaaaatcagagac---------agaagaagaagaaaagcg 51
||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ACCTTTTTCACTTTTGCCGAGAAAATCAGAGACAGAAGAAGAAGAAGAAGAAGAAAAGCG 60
Query 52 aaaaaaa-GCAAAACATGAAGGCGACGACGAAGACTCCGATCCACGTGGTGTGGTCATGG 110
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 AAAAAAAGGCAAAACATGAAGGCGACGACGAAGACTCCGATCCACGCGGTGTGGTCATGG 120
Query 111 GTTAGGAGACAACCTCCGAAGGTGAAGGCTTTTCTCGCCGTGGTCACTGGCATGGCGGCT 170
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTAAGGAGACAACCTCCAAAGGTGAAGGCTTTTCTCGCCGTGGTCACTGGCATGGCGGCT 180
Query 171 TTGGTTCTTCTCAGATTCATTGTTCACGATCACGACAATCTCTTCGTTGCCGCTGAGGCT 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGGTTCTTCTCAGATTCATTGTTCACGATCACGACAATCTCTTCGTTGCCGCTGAGGCT 240
Query 231 GTTCATTCCATCGGGATCTGTGTGCTCATCTACAAACTCATGAAGGAGAAGACCTGTGCC 290
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 GTTCATTCCATCGGGATCTGTGTTCTCATCTACAAACTCATGAAGGAGAAGACCTGTGCC 300
Query 291 GGATTGTCACTGAAATCTCAGGAGCTTACGGCGATATTTTTAGCTGTTAGGCTGTATTGT 350
||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 301 GGATTGTCACTGAAATCCCAGGAGCTTACGGCGATATTTCTAGCTGTCAGGCTGTATTGT 360
Query 351 AGCATTGTAATGGAATATGATATACATACCATTCTTGACTTGGCTACTTTGGGAACAACT 410
||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 361 AGCTTTGTAATGGAATATGATATACATACTATTCTGGACTTGGCTACTTTGGGAACAACT 420
Query 411 CTCTGGGTTATATTTATGATTCGTTTCAAGTTAAGAGCTAGTTACATGGAGGACAAAGAC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTCTGGGTTATATTTATGATTCGTTTCAAGTTAAGAGCTAGTTACATGGAGGACAAAGAC 480
Query 471 AACTTTCCTCTCTATTATGTGCTTGCGCCCTGTGTTGCATTAGCTGTGTTCATCCATCCA 530
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 AACTTTCCTCTCTATTATGTGCTTGCGCCCTGTGTTGTTTTAGCTGTGTTCATCCATCCA 540
Query 531 TCGACCTCTCATAACATAATAAACAGAATTTCATGGGCTTTATGTGTATACCTTGAAGCT 590
|| ||||||||| ||||| ||||||| ||||||||||| |||||||||||||||||||||
Sbjct 541 TCCACCTCTCATCACATATTAAACAGGATTTCATGGGCATTATGTGTATACCTTGAAGCT 600
Query 591 GTTTCAGTACTACCTCAGCTACGAGTGATGCAGAACACAAAGATTGTTGAACCGTTCACG 650
||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTTTCTGTTCTGCCTCAGCTACGAGTGATGCAGAACACAAAGATTGTTGAACCGTTCACG 660
Query 651 GCTCATTATGTTTTTGCACTTGGAGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTCATTATGTTTTTGCACTTGGAGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTA 720
Query 711 CAGGTTGTGGACACGCGGGGACGGTTGCTTGTAGCATTGGGTTATGGATTGTGGCCATCA 770
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 CAGGTTGTGGACACGCGGGGACGGTTGCTTGTAGCATTGGGTTATGGATTTTGGCCATCA 780
Query 771 ATGGTTCTGATCTCAGAAATTGTTCAAACTTTCATCTTGGCAGATTTCTGTTACTACTAC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ATGGTTCTGATCTCAGAAATTGTTCAAACTTTCATCTTGGCAGATTTCTGTTACTACTAC 840
Query 831 GTCAAAAGCGTTTTCGGAGGCCAGCTTGTTCTCCGGCTACCGTCTGGAGTAGTATAAGTT 890
||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 841 GTCCAAAGCGTTTTCGGAGGGCAGCTTGTTCTCCGGCTTCCGTCTGGAGTAGTTTAAGTT 900
Query 891 CAAAAGATAGAAATACCCCAACGATGTCCTGCGATGAGCTTGACGGAAATTCTAATTGGG 950
||||||||||||||| | || ||||||| | | ||||||| |||||||||| || ||
Sbjct 901 AAAAAGATAGAAATACTCAAATGATGTCC-G--ACGAGCTTGCCGGAAATTCTTATCGG- 956
Query 951 AAAGATAGCTCAATTTTTCTTTACCTCTGATTTCATCGTTTATGTGTCT 999
||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct 957 AAAGACAGCTCAGTTTTTCTTTACCTCTGATTTCACCGTTTATGTGTCT 1005
> Ahg932042 jgi|Araly1|932042|scaffold_400030.1
Length=853
Score = 869 bits (470), Expect = 0.0
Identities = 709/825 (86%), Gaps = 14/825 (2%)
Strand=Plus/Plus
Query 80 GAAGACTCCGATCCACGTGGTGTGGTCATGGGTTAGGAGACAACCTCCGAAGGTGAAGGC 139
||||||||||||||||| ||| | | ||||||| || || || || || |||||||| ||
Sbjct 26 GAAGACTCCGATCCACGCGGTTTCGACATGGGTGAGAAGGCAGCCACCAAAGGTGAAAGC 85
Query 140 TTTTCTCGCCGTGGTCA-CTGGCATGGCGGC-TTTGGTTCTTCTCAGATTCATTGTTCAC 197
||| || ||||| || | |||| |||||||| || ||||||||||||||||| ||||||
Sbjct 86 TTTCCTTGCCGTCGT-ATCTGGTATGGCGGCGCTT-GTTCTTCTCAGATTCATCGTTCAC 143
Query 198 GATCACGACAATCTCTTCGTTGCCGCTGAGGCTGTTCATTCCATCGGGATCTGTGTGCTC 257
|||||||||||||||||||||||||| || ||||||||||| || || |||| ||| ||
Sbjct 144 GATCACGACAATCTCTTCGTTGCCGCCGAAGCTGTTCATTCTATTGGAATCTCTGTTCTT 203
Query 258 ATCTACAAACTCATGAAGGAGAAGACCTGTGCCGGATTGTCACTGAAATCTCAGGAGCTT 317
||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 204 ATCTATAAACTCATGAAGGAGAAGACTTGTGCTGGATTGTCATTGAAATCTCAGGAGCTT 263
Query 318 ACGGCGATATTTTTAGCTGTTAGGCTGTATTGTAGCATTGTAATGGAATATGATATACAT 377
||||| |||||| ||||||| ||||| ||||| || |||||||||||||||| ||||||
Sbjct 264 ACGGCAATATTTCTAGCTGTGAGGCTTTATTGCAGTTTTGTAATGGAATATGACATACAT 323
Query 378 ACCATTCTTGACTTGGCTACTTTGGGAACAACTCTCTGGGTTATATTTATGATTCGTTTC 437
|||||||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||
Sbjct 324 ACCATTCTGGACTTGGCTACTTTGGGAACAACACTCTGGGTTATATATATGATCCGTTTT 383
Query 438 AAG-TTAAGAGCTAGTTACATGGAGGACAAAGACAACTTTCCTCTCTATTATGTGCTTGC 496
||| | || ||||| |||||||||||| |||||||||||| |||||||||||||||| |
Sbjct 384 AAGCTCAA-AGCTACTTACATGGAGGAAAAAGACAACTTTGCTCTCTATTATGTGCTCGT 442
Query 497 GCCCTGTGT--TGCATTAGCTGTGTTCATCCATCCATCGACCTCTCATAACATAATAAAC 554
||||||||| ||| ||||||| || || |||||||| || || || || ||| | ||
Sbjct 443 GCCCTGTGTCGTGC--TAGCTGTATTGATTCATCCATCAACGTCACACAATATATTGAAT 500
Query 555 AGAATTTCATGGGCTTTATGTGTATACCTTGAAGCTGTTTCAGTACTACCTCAGCT-ACG 613
||||| || |||| || ||||| ||||| ||||||||||||||||| || ||||| | |
Sbjct 501 AGAATATCCTGGGGATTCTGTGTTTACCTCGAAGCTGTTTCAGTACTGCCACAGCTGA-G 559
Query 614 AGTGATGCAGAACACAAAGATTGTTGAACCGTTCACGGCTCATTATGTTTTTGCACTTGG 673
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 560 AGTGATGCAGAACACAAAGATTGTCGAACCCTTCACGGCTCATTATGTTTTTGCACTTGG 619
Query 674 AGTAGCAAGGTTCCTCAGCTGTGCCCACTGGGTTTTACAGGTTGTGGACACGCGGGGACG 733
||||||||| || | |||||||| ||||||||||||||| || ||||||| || |||||
Sbjct 620 AGTAGCAAGATTTTTTAGCTGTGCACACTGGGTTTTACAGATTATGGACACCCGCGGACG 679
Query 734 GTTGCTTGTAGCATTGGGTTATGGATTGTGGCCATCAATGGTTCTGATCTCAGAAATTGT 793
||||||||| ||||||||||| | |||||||| |||||| | ||||||||||| ||
Sbjct 680 CCTGCTTGTAGTGCTGGGTTATGGACTATGGCCATCGATGGTTATAATCTCAGAAATCGT 739
Query 794 TCAAACTTTCATCTTGGCAGATTTCTGTTACTACTACGTCAAAAGCGTTTTCGGAGGCCA 853
||||| |||||||||||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 740 CCAAACATTCATCTTGGCAGATTTCTGTTACTACTACGTTAAAAGTGTTTTCGGTGGCCA 799
Query 854 GCTTGTTCTCCGGCTACCGTCTGGAGTAGTATAAGTTCA-AAAGA 897
||||||||| |||| || ||||| || || |||||| | |||||
Sbjct 800 GCTTGTTCTAAGGCTTCCATCTGGGGTTGTGTAAGTT-ATAAAGA 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41592102447
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5