BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38800.1
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490644 jgi|Araly1|490644|fgenesh2_kg.7__77__AT4G38800.1 1495 0.0
Ahg951304 jgi|Araly1|951304|scaffold_803191.1 67.6 2e-10
> Ahg490644 jgi|Araly1|490644|fgenesh2_kg.7__77__AT4G38800.1
Length=940
Score = 1495 bits (809), Expect = 0.0
Identities = 905/950 (95%), Gaps = 11/950 (1%)
Strand=Plus/Plus
Query 12 AAAAGGTCCAAAAACGAATAAACTGTATCTCTCATTCGCCGGAGTTTCCAGCCGTTTCTT 71
||| ||||||||||||||| ||| || || ||||||||||||||||||||||||||||
Sbjct 1 AAAGGGTCCAAAAACGAAT-AAC--TA--TCGCATTCGCCGGAGTTTCCAGCCGTTTCTT 55
Query 72 TCCGATTCTCGGATTTTTCCTGGGAATCAAACGCATCGCCGAGAATCGGAAGAGAGGGAT 131
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 56 CCCGATTCTCGGATTTTTCTTGGGAATCAAACGCGTCGCCGAGAATCGGAAGAGAGGGAA 115
Query 132 AAGGTTATGGCTCCTCATGGAGATGGATTAAGTGACATCGAAG-AACCTGAGGTCGATGC 190
|||| ||||||||||||||||||||||||||||||||||| || ||||||| | | |||
Sbjct 116 AAGGGTATGGCTCCTCATGGAGATGGATTAAGTGACATCG-AGAAACCTGA-G-C-TTGC 171
Query 191 TCAATCGGAGATTCTTCGACCGATCTCCTCAGTCGTCTTCGTCATCGCTATGCAAGCGGA 250
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 172 TCAATCGGAGATTCTTCGTCCGATCTCCACAGTCGTCTTCGTCATCGCTATGCAAGCGGA 231
Query 251 GGCTCTTCCTTTGGTCAACAAGTTCGGACTCTCTGAAACTACTGATTCGCCGCTTGGTAA 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GGCTCTTCCTTTGGTCAACAAGTTCGGACTCTCTGAAACTACTGATTCGCCGCTTGGTAA 291
Query 311 AGGATTGCCCTGGGTTCTGTATCACGGCGTGCATAAAGATCTTCGAATCAATGTAGTTTG 370
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AGGACTGCCCTGGGTTTTGTATCACGGCGTGCATAAAGATCTTCGAATCAATGTAGTTTG 351
Query 371 CCCCGGAAGAGATGCAGCTTTAGGGATCGATAGTGTTGGAACTGTTCCAGCTTCTCTCAT 430
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 352 CCCCGGAAGAGATGCAGCTTTAGGGATCGATAGTGTTGGAACTGTTCCTGCTTCTCTCAT 411
Query 431 AACTTTTGCTTCCATCCAAGCATTAAAACCTGACATCATAATCAATGCCGGAACCTGCGG 490
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 412 AACTTTTGCTTCTATCCAAGCATTAAAACCTGACATTATAATCAATGCTGGAACCTGCGG 471
Query 491 TGGCTTCAAGGTCAAAGGAGCCAACATAGGCGATGTATTCCTTGTATCTGATGTTGTGTT 550
|||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 472 TGGCTTTAAGGTTAAAGGAGCCAACATAGGCGACGTATTCCTTGTATCTGATGTTGTGTT 531
Query 551 TCATGATAGAAGAATACCAATTCCGATGTTTGATCTGTATGGAGTTGGTCTCCGTCAGGC 610
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 532 TCATGATAGAAGAATACCAATTCCGATGTTTGATCTGTATGGAGTTGGTCTTCGTCAGGC 591
Query 611 ATTCTCGACACCCAATCTCCTCAAGGAACTCAATTTGAAGATTGGCAGGTTATCTACTGG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 ATTCTCGACACCCAATCTCCTCAAGGAACTCAATTTGAAGATTGGCAGGTTATCTACTGG 651
Query 671 TGACTCGTTGGATATGTCCACGCAAGATGAAACATTGATCATTGCCAATGATGCTACGCT 730
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 652 TGACTCGTTGGATATGTCCACGCAAGATGAATCATTGATCATTGCCAATGATGCTACACT 711
Query 731 AAAGGACATGGAGGGTGCTGCCGTGGCGTATGTGGCTGATCTTCTGAAAATACCAGTCGT 790
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 712 AAAAGACATGGAGGGTGCTGCTGTGGCGTACGTGGCTGATCTTCTGAAAATACCAGTCGT 771
Query 791 GTTCCTCAAAGCCGTGACCGATCTAGTGGACGGAGATAAACCTACAGCAGAAGAGTTCTT 850
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 772 GTTCCTCAAAGCCGTGACCGATCTAGTGGACGGAGATAAACCTACTGCAGAAGAGTTCTT 831
Query 851 GCAGAACTTGACAGTTGTGACCGCTGCATTAGAGGGAACTGCTACTAAAGTGATCAACTT 910
|||||||||||||||||| ||||||||| |||||| |||||| |||||||||||||||||
Sbjct 832 GCAGAACTTGACAGTTGTTACCGCTGCACTAGAGGAAACTGCCACTAAAGTGATCAACTT 891
Query 911 CATCAATGGGAGAAACCTTTCGGACCTTTAACTTCTGTTCTCTTCCTTTT 960
| ||||||||| ||||||||| |||||||||||| |||||||||| ||||
Sbjct 892 CGTCAATGGGAAAAACCTTTCAGACCTTTAACTTTTGTTCTCTTC-TTTT 940
> Ahg951304 jgi|Araly1|951304|scaffold_803191.1
Length=304
Score = 67.6 bits (36), Expect = 2e-10
Identities = 53/60 (88%), Gaps = 5/60 (8%)
Strand=Plus/Plus
Query 164 TGACATCGAAG-AACCTGAGGTCGATGCTCAATCGGAGATTCTTCGACCGATCTCCTCAG 222
|||||||| || |||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 23 TGACATCG-AGAAACCTGAGGT---TGTTCAATCGGAGATTCTTCGACCGATCTCCACAG 78
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42316437870
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5