BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38810.2
Length=1669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490646 jgi|Araly1|490646|fgenesh2_kg.7__79__AT4G38810.2 2113 0.0
> Ahg490646 jgi|Araly1|490646|fgenesh2_kg.7__79__AT4G38810.2
Length=1583
Score = 2113 bits (1144), Expect = 0.0
Identities = 1445/1577 (92%), Gaps = 74/1577 (5%)
Strand=Plus/Plus
Query 98 TTTTGGGTGTGTCAAGTTTCTGTTCTTCCTTTTCTCGTGCTTCCATCACGAGATATCTCA 157
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 73 TTTGGGGTGTGTCAAGTTTCTGTTTTTCCTTTTCTCGTGCTTCCATCACGAGATCTCTCA 132
Query 158 CAAGGCTCTCGCGACTCAAGAAAGGTAAAGATAAAGAAAGAAGAAGCAAAGATTCCATAA 217
|||||||| ||||||||||||||| ||||| |||||| | ||| ||||||||||||
Sbjct 133 CAAGGCTCCCGCGACTCAAGAAAGATAAAG----AGAAAG-A-AAG--AAGATTCCATAA 184
Query 218 ATGGACTTGAAAAGCAACAACCACCAGCAACAGCAACAAGTACTTGATGGCTCGGACATA 277
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 185 ATGGACATGAAAAGCAACAACCACCAGCAACAGCAACAAGTACTTGATGGCTCGGACATA 244
Query 278 GTTGAGCTGGTGGAAAACGAGAAAGTGTTCGACAAGTTTGTGGAACAAAAGTTTCAACAG 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 GTTGAGCTGGTGGAAAACGAGAAAGTGTTCGACAAGTTTGTGGAACAAAAGTTTCAACAG 304
Query 338 TTAGACCAAGATGAAGATGGTAAGCTCTCCGTGACTGAGTTACAACCCGCCGTTGCTGAT 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TTAGACCAAGATGAAGATGGTAAGCTCTCCGTGACTGAGTTACAACCCGCCGTTGCTGAT 364
Query 398 ATCGGCGCTGCTCTTGGTTTGCCTGCTCAAGGAACTTCTCCTGATTCCGATCACATCTAC 457
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 365 ATCGGCGCCGCTCTTGGTTTGCCTGCTCAAGGCACTTCTCCTGATTCTGATCACATCTAC 424
Query 458 TCCGAGGTCCTAAACGAATTCACTCATGGGAGTCAAGAGAAAGTGAGCAAGACAGAGTTC 517
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 TCCGAGGTTCTAAACGAATTCACTCATGGGAGTCAAGAGAAAGTGAGCAAGACAGAGTTT 484
Query 518 AAAGAAGTGTTGTCGGACATTTTGTTGGGTATGGCTGCTGGTCTGAAACGTGATCCTATC 577
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 485 AAAGAAGTGTTGTCGGACATTTTGCTGGGTATGGCTGCTGGTCTGAAACGTGATCCTATC 544
Query 578 GTCATCCTCAGGATGGACGGTGAGGATCTCTCGGAGTTTGTCCACGGCCCTGGATATGAA 637
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 545 GTCATCCTCAGGATGGACGGTGAGGATCTCTCGGAGTTTGTCCACGGCCCTGGATACGAA 604
Query 638 ATCGAGAGC--ATTTCTGTTTTCTCAGAGCTCTCCAGTAGCAAGGACGCATCGCTCCGTG 695
||||| | | ||||||| |||||||||||||||||| || ||||||||||||||||||
Sbjct 605 ATCGA-A-CTTGTTTCTGTCTTCTCAGAGCTCTCCAGTTGCGAGGACGCATCGCTCCGTG 662
Query 696 ATTGTATCGTCAAAGCTCTCCAGTCTCTTTCTGTTGATCATGGAATGCCTCCTTCCAACG 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 ATTGTATCGTCAAAGCTCTCCAGTCTCTTTCTGTTGATCATGGAATGCCTCCTTCCAACG 722
Query 756 ACCCATGGGTGATGAGCAACATCGTAGAACCAATTGTTGACTCTTGTCTTGATGAAGAAG 815
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 723 ACCCATGGGTGATGAGCAACATTGTAGAACCAATTGTTGACTCTTGTCTTGATGAAGAAG 782
Query 816 ATAAAAGAGAGAAAAGCGCGTCTCAGGAGAGATTCTTGGAAGCATTCAAGAGAGTCGTGG 875
|||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 783 ATAAGAGAGAGAAGAGCGCGTCTCAGGAGAAATTCTTGGAGGCATTCAAGAGAGTCGTGG 842
Query 876 AGAGTGTGGCTCAGCGTCTCAATGAACAGCCCGTGATCGTTGCTCACAGCGAAAACACCT 935
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||
Sbjct 843 AGAGAGTGGCTCAGCGTCTCAATGAACAACCCGTGATCGTTGCTCACAGCGAAAATA-CT 901
Query 936 TT-GATGGGAGCGGTATCAGGAGGCTCTTGTCCAATAAATTCGAATTCGATAAGGCACTA 994
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTCGATGGGAGCGGTGTCAGGAGGCTCTTGTCCAATAAATTCGAATTCGATAAGGCACTA 961
Query 995 AACGTTGCCA-TGGAGACGATTCCAAAAGACCGTCAGGGTAAGGTGTCTAAAGGATATCT 1053
||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 962 AACGTTG-CATTGGAGACGATTCCAAAAGACCGTCATGGTAAGGTGTCTAAAGAATATCT 1020
Query 1054 ACGAGCTGTGCTTGACACTGTTGCACCATCGGCCACTTTACCACCAATAGGCGCTGTGTC 1113
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct 1021 ACGAGCTGTGCTTGACACTGTTGCACCATCTGCGACTTTACCACCGATAGGCGCTGTGTC 1080
Query 1114 CCAGATGGATAATATGATAATGGAAGCGTTGAAGATGGTGAATGGAGATGATGGAAATGT 1173
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1081 CCAGATGGATAATATGATAATGGAAGCGTTGAAGATGGTGAATGGAGATGATGGAAATAT 1140
Query 1174 GGTGAAGGAAGAAGAGTTTAAGAAAACAATGGCAGAGATATTGGGGAGTATAATGTTGCA 1233
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 GGTGAATGAAGAAGAGTTTAAGAAAACAATGGCAGAGATATTGGGGAGTATAATGTTGCA 1200
Query 1234 GCTCGAGGGTAGTCCCATATCGGTTTCCTCTAACTCGGTGGTTCACGAGCCGCTCACCTC 1293
||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GCTTGAGGGTAATCCGATATCGGTTTCCTCTAACTCGGTGGTTCACGAGCCGCTCACCTC 1260
Query 1294 GGCTACCTTTCTGCCGTCAACTTCGACTGATACAGAGGAGCCTTCAAACTAATCATAGAA 1353
|||||| ||||||| | | |||| || ||| |||||||||||||||| |||||||| |
Sbjct 1261 GGCTACATTTCTGCAGCCGACTTTGAATGAAACAGAGGAGCCTTCAACCTAATCAT---A 1317
Query 1354 GGGAATAAGCAGCACTAGCAGCAACAAATGTTATATGGTTTTGACTTTTGAG-TGTTTAC 1412
| | | | | | |||||||||||| ||| | ||| | |||||
Sbjct 1318 --G----A-C-G-----G--G-----AATGTTATATGG-TTT--C---AGAGTTTTTTAC 1351
Query 1413 CCCCAAAAGTTTTAGATTAATGAGGAAAACCGTCTTTACTTT-CAGATGTATAAAATTGA 1471
|||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 1352 CCCCAAAAGTTTTAGAGTAATGAGGAAAACCGTC-TTACTTTGCAGATGTATAATATTGA 1410
Query 1472 AAGTTTGGGGTTTCCTCTTGTTGGTGTGGTGATTCTACTCATGCCttttt-ttttttttt 1530
||||||||||||||||||||| |||||||||||| |||||| | |||||| |||| ||||
Sbjct 1411 AAGTTTGGGGTTTCCTCTTGTGGGTGTGGTGATTATACTCACG-CTTTTTCTTTTCTTTT 1469
Query 1531 tCTAATGACCATGGGATGCAATGTTTACTCTGTTTTTTAATTTCGTTA-AAATTTGTTTA 1589
|||||| |||| ||||||||||||||||| || ||||| ||||||||| ||| ||
Sbjct 1470 TCTAATTACCAAGGGATGCAATGTTTACTGTG-TTTTT-ATTTCGTTATAAA-----TT- 1521
Query 1590 CGTTTATGATGCTTGAATGGCTATGATGAAACATTTGAGTTATCTTTAAAAGTGTGAAAT 1649
| || | | | | | | | ||||||||||||||||||||||||||||| |||||
Sbjct 1522 -G-TT-T-A--C--G--T---T-T-ATGAAACATTTGAGTTATCTTTAAAAGTGGGAAAT 1566
Query 1650 AAATATTCTGAAGTTAA 1666
||| ||| |||||||||
Sbjct 1567 AAAAATTGTGAAGTTAA 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62582272535
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5