BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38825.1
Length=485
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490648 jgi|Araly1|490648|fgenesh2_kg.7__81__AT4G38820.1 523 4e-148
Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1 191 4e-48
Ahg941320 jgi|Araly1|941320|scaffold_601864.1 174 5e-43
> Ahg490648 jgi|Araly1|490648|fgenesh2_kg.7__81__AT4G38820.1
Length=388
Score = 523 bits (283), Expect = 4e-148
Identities = 332/355 (94%), Gaps = 6/355 (2%)
Strand=Plus/Plus
Query 81 aaaaaaaTGGGAGTGTTCCGAGGTCTTATGGGCGCAAAGAAGATCTTTCAAGGTCGATCA 140
||||||||||| ||| |||||||||||||| | |||||||||||||||||||| ||||||
Sbjct 38 AAAAAAATGGGCGTGGTCCGAGGTCTTATGAGTGCAAAGAAGATCTTTCAAGGCCGATCA 97
Query 141 ATGGCAGCTTCGACACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 200
||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 98 ATGACGGCTTCGACACCAAAGGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAA 157
Query 201 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGATACATAGTGCCAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAA 217
Query 261 TCTGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTA 320
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 218 TCCGAACAAGAGTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGTCCTGAA 277
Query 321 GATACATTTATCACCGTCACTTCTCAGCTTCATTAGATCCAATTCACAAGGATCACATAT 380
||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 278 GATACTTTTATCACTGTCACTTCTCAGCTTCATTAGTTCCAATTCACAAGGATCACATAT 337
Query 381 ATGTAACAATTTTTG--AGGTCATTAATTAGATGTAGAAGATATTTAGAACCCAG 433
|||||||||||||| || |||||| ||| |||||||||||||||||||||
Sbjct 338 ATGTAACAATTTTTTTTAGATCATTA----GATTTAGAAGATATTTAGAACCCAG 388
> Ahg488668 jgi|Araly1|488668|fgenesh2_kg.6__1802__AT5G18060.1
Length=420
Score = 191 bits (103), Expect = 4e-48
Identities = 167/198 (84%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 154 CACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAAAGATACATAGTGC 213
|||||||||||||||||||||||||||| ||||| ||||||| ||| ||||| | ||||
Sbjct 75 CACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAGAGATATTTGGTGC 134
Query 214 CAG-TCTCATATTTGAACCAGCCTTCATTTCAAGCT-TTGTTGAGTAAATCTGAACAAGA 271
| | ||||||| |||| ||| ||||||||||||||| || | |||||||| || ||||
Sbjct 135 C-GCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTC-AGTAAATCCGAGGAAGA 192
Query 272 GTTTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTAGATACATTTAT 331
|||||| || |||||||||||||| ||||| || |||||||| |||| |||||| || ||
Sbjct 193 GTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGATACCTTCAT 252
Query 332 CACCGTCACTTCTCAGCT 349
||| || ||||||| |||
Sbjct 253 CACTGTGACTTCTCGGCT 270
> Ahg941320 jgi|Araly1|941320|scaffold_601864.1
Length=314
Score = 174 bits (94), Expect = 5e-43
Identities = 162/196 (83%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 154 CACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAAAGATACATAGTGC 213
|||||||||||||||||||||||||||| ||||| |||| || ||| ||||| | ||||
Sbjct 92 CACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGAAGAAGAGATATTTGGTGC 151
Query 214 CAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAATCTGAACAAGAGT 273
|| |||||||||| ||||| || || || |||||| || | |||||||| || ||||||
Sbjct 152 CAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGTAAATCCGAGGAAGAGT 211
Query 274 TTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTAGATACATTTATCA 333
||||||| |||||||| ||||| ||||| || || ||||| |||| |||||| || ||||
Sbjct 212 TTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGATACCTTCATCA 271
Query 334 CCGTCACTTCTCAGCT 349
|| ||||||| |||
Sbjct 272 ATGTGACTTCTCGGCT 287
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17589726529
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5