BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38830.1
Length=2011
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490649 jgi|Araly1|490649|fgenesh2_kg.7__82__AT4G38830.1 1858 0.0
> Ahg490649 jgi|Araly1|490649|fgenesh2_kg.7__82__AT4G38830.1
Length=1956
Score = 1858 bits (1006), Expect = 0.0
Identities = 1128/1187 (95%), Gaps = 7/1187 (1%)
Strand=Plus/Plus
Query 830 CAAGGGGATAAAAACAGAGGTGTA---CCTAAAGCTTTGATCTTTGCTTCTGCTTCAGTT 886
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 772 CAAGGGGATAAAAACAGAGGTGTACCTCCTAAAGCTTTGATCTTTGCTGCTGCTTCAGTT 831
Query 887 GCTATTGTTGTCTTATTTATAGTACTCTTAGTCGTTTTCCTAAAGCTGAGAAGGAAGGAG 946
||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 832 GCTATTGTTGTCTTACTTATAGTATTCTTAGTCGTTTTCCTAAGGCTGAGAAGGAAGAAG 891
Query 947 AACATCAGAAATTCAGAAAACAAACATGAAAATGAAAATATTAGCACGGATTCCATGAAA 1006
|| | || |||||| ||| | | |||||||||||||||||||||||||||||| |||| |
Sbjct 892 AAGAACAAAAATTCGGAACATAGACATGAAAATGAAAATATTAGCACGGATTCAATGAGA 951
Query 1007 TTTGATTTCAGTGTATTACAAGATGCAACAAGTCATTTTTCACTAGAAAATAAACTTGGA 1066
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 952 TTTGATTTCAGTGTATTACAAGATGCAACAAGTTATTTTTCATTAGAAAATAAACTTGGA 1011
Query 1067 GAAGGTGGATTCGGAGCAGTTTATAAGGGTGTGCTTTCTGATGGACAAAAAATAGCGGTG 1126
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1012 GAAGGTGGATTCGGAGCAGTTTATAAGGGTGTGCTTTCTGGTGGACAAAAAATAGCGGTG 1071
Query 1127 AAAAGGTTGTCGAAAAATGCACAACAAGGTGAAACCGAATTCAAGAACGAGTTCTTGTTG 1186
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1072 AAAAGGTTGTCCAAAAATGCACAACAAGGTGAAACCGAATTCAAAAACGAGTTCTTGTTG 1131
Query 1187 GTGGCTAAGCTTCAGCATCGCAATCTCGTGAAGCTCTTAGGTTACTCAATAGAAGGAACT 1246
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GTGGCTAAGCTTCAACATCGTAATCTCGTGAAGCTCTTAGGTTACTCAATAGAAGGAACT 1191
Query 1247 GAAAGGCTTCTTGTCTATGAGTTCCTCCCACACACTAGTCTCGACAAGTTCATCTTCGAT 1306
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAAAGGCTTCTTGTCTATGAGTTCCTCCCACACACTAGTCTCGACAAGTTCATCTTCGAA 1251
Query 1307 CCGATCCAAGGTAATG-AATTGGAGTGGGAAAT-ACGATACAAAATCATTGGAGGTGTAG 1364
|||||||| || || | ||||||||||||| || | ||||||||||||||||||||||||
Sbjct 1252 CCGATCCAGGGCAA-GCAATTGGAGTGGGATATTA-GATACAAAATCATTGGAGGTGTAG 1309
Query 1365 CTCGAGGACTTCTTTATCTTCATCAAGATTCTCGTCTGCGGATTATACACCGTGATCTTA 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 CTCGAGGACTTCTTTATCTTCATCAAGATTCTCGTCTGCGGATTATACACCGTGATCTTA 1369
Query 1425 AAGCTAGTAACATATTATTAGACGAGGAAATGACCCCAAAAATCGCAGATTTCGGAATGG 1484
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1370 AAGCTAGTAACATATTATTAGACGAGGAAATGACCCCAAAAATTGCAGATTTTGGAATGG 1429
Query 1485 CTAGGCTTTTCGATATCGACCACACGACTCAACGCTACACGAATAGGATCGTTGGGACTT 1544
||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1430 CTAGGCTATTCGATATGGACCACACAACTCAACGCTACACAAATAGGATCGTTGGGACTT 1489
Query 1545 TTGGATACATGGCTCCAGAGTATGTAATGCACGGACAGTTCTCGTTCAAGACAGATGTTT 1604
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1490 TTGGATACATGGCTCCAGAGTATGTAATGCACGGCCAGTTCTCGTTTAAGACAGATGTTT 1549
Query 1605 ACAGTTTCGGAGTTTTAGTTCTTGAGATCATCAGTGGTAAGAAAAACAGTGGTTTCAGCA 1664
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1550 ACAGTTTCGGAGTTTTGGTTCTTGAGATCATCAGTGGTAAGAAAAACAGTTGTTTCAGCA 1609
Query 1665 GTGAGGACAGCATGGGAGATCTCATCAGCTTCGCTTGGAGAAATTGGAAGGAAGGCGTTG 1724
|||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 1610 ATGAGGACAGCATGGAAGATCTCCTTAGCTTTGCTTGGAGAAATTGGAAGGAAGGCGTTG 1669
Query 1725 CTTTGAATCTTGTGGACAAGATTTTGATGACAATGTCGAGTTATTCATCGAATATGATCA 1784
||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1670 CTTTGAATCTTGTGGACAAGATTTTGATGACCATGTCAAGTTATTCATCGAACATGATCT 1729
Query 1785 TGAGATGCATAAACATTGGTCTTCTTTGTGTCCAAGAGAAAGTTGCAGAGAGACCAAGCA 1844
||||||||||||||||||||||||||||||||||||| || ||| ||||||| |||||||
Sbjct 1730 TGAGATGCATAAACATTGGTCTTCTTTGTGTCCAAGATAACGTTTCAGAGAGGCCAAGCA 1789
Query 1845 TGGCTTCTGTTGTTCTGATGTTAGATGGACATACTATTGCTCTTTCAGAACCATCAAAAC 1904
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1790 TGGCTTCGGTTCTTCTGATGTTAGATGGACATACTCTTGCTCTTTCAGAACCATCAAAAC 1849
Query 1905 CTGCATTTTTCTCACACAGCAATGCGGTATCAGATAGTTCTTCTTCTTTAGGACATAATG 1964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 CTGCATTTTTCTCACACAGCAATGCGGTATCAGATAGTTCTTCTTCTTTAGGACATAATG 1909
Query 1965 CAAAAACTTCAAACTATAATTCCAACACTGAGTTGTATCCTCGGTGA 2011
||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1910 CAAAAACTTCAAATTATAATTCCAACACTGAGTTGTATCCTCGGTGA 1956
Score = 1190 bits (644), Expect = 0.0
Identities = 729/770 (95%), Gaps = 6/770 (1%)
Strand=Plus/Plus
Query 14 ATGTTGTCTCTTCTTCTTCCTCTGATCTCACTCTTATTCCAAATCCAATGCTTCACCGTT 73
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGTTGTCTCTTCTTCTTCCTCTGATCTCACTCTTATTCCAAATCCAATGCTTTACCGTT 60
Query 74 AAGTCGCAACCGGTTCCGTTAAACCAAATATGCTCAAACGTCACAGGCAACTTCACCGTT 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAGTCGCAACCGGTTCCGTTAAACCAAATATGCTCAAACGTCACAGGCAACTTCACCGTT 120
Query 134 AACACCCCTTACGCCGTCAACCTCGACCGCCTCATCTCCTCTTTATCATCTCTCCGACGT 193
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 121 AACACCCCTTACGCCGTCAACCTCGACCGTCTCATCTCCTCTTTATCATCTCTCCAAAGT 180
Query 194 AACGTTAACGGATTTTACAACATCTCAGTGGGAGACTCCGATGAAAAAGTCAATTCAATC 253
|||| |||||||||||||||||| ||||| ||||||||||| ||||||||||| |||||
Sbjct 181 AACGATAACGGATTTTACAACATTTCAGTCGGAGACTCCGACGAAAAAGTCAACGCAATC 240
Query 254 TCACAGTGTAGAGGCGATGTCAAACTTGAAGTTTGCATCAACTGCATCGCAATGGCTGGA 313
||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 241 TCACAGTGTAGAGGCGATGTCAAACCTGAAGATTGCATCAATTGCATCGCAATGGCTGGA 300
Query 314 AAAAGACTTGTCACGCTGTGTCCGGTTCAGAAAGAGGCGATTATTTGGTATGACAAATGT 373
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 AAAAGACTTGTCACGTTGTGTCCGGTTCAGAAAGAGGCGATTATTTGGTATGAAAAATGC 360
Query 374 ACGTTTAGATACTCAAACCGGACAATCTTCAATAGATTGGAGATTTCCCCTCACACAAGT 433
|||||| | ||||||||||| || |||||||||||||||||||||| || |||||||||
Sbjct 361 ACGTTTCGGTACTCAAACCGAACGATCTTCAATAGATTGGAGATTTTCCTTCACACAAGC 420
Query 434 ATAAC-GGGAACAAGAAACTTCACCGGAGATCGTGATAG-TTGGGAGAAATCTTTAAGGG 491
||||| |||| |||||||||||||||||||||| ||| | |||||||||||| |||||||
Sbjct 421 ATAACCGGGA-CAAGAAACTTCACCGGAGATCGCGAT-GCTTGGGAGAAATCATTAAGGG 478
Query 492 GTTTACTCGAAGGGCTTAAAAACAGAGCCTCTGTTATTGGTCGGAGCAAGAAGAATTTTG 551
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 479 GTTTACTCGAAGGGCTTAAAAACAGAGCCTCTGTTATTGGTCGTAGCAAGAAGAATTTTG 538
Query 552 TTGTAGGCGAAACGAGCGGGCCTTCATTTCAGACATTGTTCGGTCTGGTTCAGTGCACAC 611
|||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 539 TTGTCGGCGAAACGAGCGGGCCGTCATTTCAGACATTGTACGGTCTGGTTCAGTGCACAC 598
Query 612 CGGATATTTCGGAAGAGGATTGTTCGTATTGTTTGTCTCAGGGTATTGCAAAGATCCCAA 671
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 599 CCGATATTTCGGAAGAGGATTGTTCCTATTGTTTGTCTCAGGGTATTGCAAAGATCCCAA 658
Query 672 GCTGTTGTGATATGAAAATGGGTAGTTATGTGATGTCTCCTAGCTGTAT-GTTGGCTTAT 730
||||||||||| |||||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 659 GCTGTTGTGATTTGAAAATGGGTAGTTATGTGTTGTCTCCTAGCTGTATTGT-GGCTTAT 717
Query 731 GCTCCCTGGAGATTCTATGATCCAGTGGACACTGATGATCCAAGCTCAGT 780
||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 718 GCTACCTGGAGATTCTATGATCCAGTGGACACTGATGAGCCAAGCTCAGT 767
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75609136325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5