BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38840.1
Length=582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490650 jgi|Araly1|490650|fgenesh2_kg.7__83__AT4G38840.1 752 0.0
Ahg941329 jgi|Araly1|941329|scaffold_601873.1 104 7e-22
> Ahg490650 jgi|Araly1|490650|fgenesh2_kg.7__83__AT4G38840.1
Length=532
Score = 752 bits (407), Expect = 0.0
Identities = 518/565 (92%), Gaps = 33/565 (6%)
Strand=Plus/Plus
Query 1 ATATATACTCATCACTGACTCCTTTCTGCTCTGCAAGTTTCTCACATTTTCCAATAAAGC 60
||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||
Sbjct 1 ATATATACTCATCACTGACTCCTTTAAGCTCTGCAAG-TTCTCAGATTTTCCAATAAAGC 59
Query 61 ATCTAACTTACAATTAAAGACAATCCATGGCGATCAGAATCCCTCGTGTGCTGCAATCAT 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 ATTTAACTTACAATTAAAGACAATCCATGGCGATCAGAATCCCTCGTGTGCTGCAATCAT 119
Query 121 CGAAGCAGATTCTCCGACAAGCCAAACTGTTGTCATCATCTTCTTCTTCTAGCTCTCTTG 180
|||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||
Sbjct 120 CGAAGCAGATTCTCCGACAAGCGAAACTGTTGTCATCTTCTTC--CT-CTAGCTCTCTTG 176
Query 181 ATGTTCCCAAAGGCTACTTAGCGGTTTACGTAGGAGAACAAAATATGAAGAGATTTGTAG 240
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 177 ATGTTCCAAAAGGCTACTTAGCGGTTTACGTAGGAGAACAAAAGATGAAGAGATTTGTAG 236
Query 241 TTCCGGTTTCGTACTTGGACCAGCCTTCATTTCAAGATCTATTAAGAAAGGCAGAGGAAG 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTCCGGTTTCGTACTTAAACCAGCCTTCATTTCAAGATCTATTAAGAAAGGCAGAGGAAA 296
Query 301 AGTTTGGATTTGATCATCCAATGGGTGGCCTCACAATCCCTTGCAGTGAAGAAATTTTTA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGTTTGGATTTGATCATCCAATGGGTGGCCTCACAATCCCTTGCAGTGAAGAAATTTTTA 356
Query 361 TTGATCTTGCTTCTCGCTTCAACTGATCATGACTCACTCGATAACCTTACTTTTGTCATT 420
|||| |||||||||||||||||||||||||||||||||| | || | || |
Sbjct 357 TTGAGCTTGCTTCTCGCTTCAACTGATCATGACTCACTC--T----TT--T---GT-A-- 402
Query 421 GATTTTTGTACATTTTGTTTTCCCAATTAGTTTTCTTCAAGAGATGAGATGACTTAGAAA 480
|||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 403 ----------CATTTT-TTT-CCCAATTACTTTTCTTCAAGAGATGAGATGACTTAGAAA 450
Query 481 CAGCATCTCTCCTTGAAAGTGAAACAGAGACTTGTAACACTCTTTTTCCTCACTTACAGT 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 CA---TCTCTCCTTGAAAGTGAAACAGAGACTTGTAACACTCTTTTTCCTCACTTACAGT 507
Query 541 GAGTTGGACTCAAATCTAATCAAAA 565
|||| ||||||||||||||||||||
Sbjct 508 GAGTAGGACTCAAATCTAATCAAAA 532
> Ahg941329 jgi|Araly1|941329|scaffold_601873.1
Length=313
Score = 104 bits (56), Expect = 7e-22
Identities = 122/152 (80%), Gaps = 11/152 (7%)
Strand=Plus/Plus
Query 197 CTTAGCGGTTTACGTAGGAGA-A-CAAAATATGAAGAGAT-TTGTAGTTCCGGTTTCGTA 253
||| || || ||||||||||| | | ||| | |||||||| || | || || | || ||
Sbjct 105 CTT-GCAGTGTACGTAGGAGAGAGCCAAA-A-GAAGAGATATT-TGGTGCCAATATCCTA 160
Query 254 CTTGGACCAGCCTTCATTTCAAGATCTAT-TAAG-AAAGGCAGAGGAAGAGTTTGGATTT 311
||| |||||||||||||||||| ||| | | || ||| | ||||||||||||||||||
Sbjct 161 TTTGAACCAGCCTTCATTTCAAGCTCT-TCTCAGTAAA-TCCGAGGAAGAGTTTGGATTT 218
Query 312 GATCATCCAATGGGTGGCCTCACAATCCCTTG 343
|||||||||||||||||| | || || |||||
Sbjct 219 GATCATCCAATGGGTGGCTTAACGATTCCTTG 250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21290818662
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5