BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38850.1
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943848 jgi|Araly1|943848|scaffold_700077.1 470 5e-132
> Ahg943848 jgi|Araly1|943848|scaffold_700077.1
Length=310
Score = 470 bits (254), Expect = 5e-132
Identities = 294/313 (94%), Gaps = 3/313 (1%)
Strand=Plus/Plus
Query 66 CAGGAAAACATAAGGGAAAATATGGCTTTTTTGAGGAGTTTCTTGGGTGCTAAGCAAATT 125
||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAGGACAAGATAA-CAAAAAGATGGCTTTTTTGAGGAGTTTCTTGGGTGCTAAGCAAATT 59
Query 126 ATTCGAAGGGAATCATCGTCGACACCAAGAGGATTCATGGCGGTCTATGTAGGAGAGAAT 185
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 ATGCGAAGGGAATCATCGTCGACACCAAGAGGATTCATGGCGGTGTATGTAGGAGAGAAT 119
Query 186 GATCAGAAGAAGAAGAGATATGTGGTGCCGGTTTCATACTTAAACCAGCCTTTGTTTCAA 245
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 120 GATCAGAAGAAGAAGAGATATGTGGTGCCGGTTTCATACTTAAACCAGCCTCTGTTTCAA 179
Query 246 CAACTGTTGAGTAAATCTGAGGAAGAGTTTGGTTATGATCATCCAATGGGCGGCTTAACA 305
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 GAACTGTTGAGTAAATCCGAGGAAGAGTTTGGTTATGATCATCCTATGGGCGGCTTAACC 239
Query 306 ATACCATGTCATGAATCTTTGTTCTTCACAGTCACATCTCAGATACAATGAAGTACTATA 365
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 240 ATACCATGTCATGAATCTTTGTTCTTCACAGTCACATCTCAGATTCGATGAAGTAGTACA 299
Query 366 CTACAACATTTCC 378
|||||||||||
Sbjct 300 --ACAACATTTCC 310
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18543616254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5