BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G38860.1

Length=793
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943849 jgi|Araly1|943849|scaffold_700078.1                        579    1e-164


> Ahg943849 jgi|Araly1|943849|scaffold_700078.1
Length=358

 Score =  579 bits (313),  Expect = 1e-164
 Identities = 340/353 (96%), Gaps = 1/353 (0%)
 Strand=Plus/Plus

Query  72   AACACTAGAACTAAACAAATGGCGGTAAAGAGATCTTCTAAGCTAACACAAACAGCAATG  131
            ||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct  4    AACACTAAAACTAAAC-AATGGCGGTAAAGAGATCTTCAAAGCTAACACAAACAGCAATG  62

Query  132  CTAAAGCAAATCCTCAAGAGATGCTCGAGCTTAGGCAAGAAACAATGCTACGACGAGGAA  191
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  63   CTAAAGCAAATCCTCAAGAGATGCTCGAGCTTAGGCAAGAAACAATGCTACGACGAGGAA  122

Query  192  GGTCTCCCTCTTGACGTACCAAAGGGACATTTTCCGGTTTACGTAGGCGAAAAGCGTACA  251
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  123  GGTCTCCCTCTTGACGTACCAAAGGGACATTTTCCGGTTTACGTAGGCGAAAAGCGAACG  182

Query  252  AGGTACATCGTACCAATCTCCTTCTTGACTCATCCTGAATTCCTGATCCTTCTTCAACAA  311
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  183  AGGTACATCGTACCAATTTCCTTCTTGACTCATCCAGAATTCCTGATCCTTCTTCAACAA  242

Query  312  GCAGAGGAAGAGTTCGGCTTTCGTCATGACATGGGAGGACTCACCATCCCTTGTGAAGAA  371
            ||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||
Sbjct  243  GCAGAGGAAGAGTTCGGCTTTCGCCACGACATGGGAGGACTCACTATCCCTTGTGAAGAA  302

Query  372  GTTGTTTTTCTCTCTCTAACATCCATGATCAGATGAGAAAATAATAGAGAGAG  424
            || ||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct  303  GTCGTTTTTCTCTCTCTAACATCCATGATCAGATGAGATAAGAATAGAGAGAG  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29278400256


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5