BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38870.1 Length=1281 Score E Sequences producing significant alignments: (Bits) Value Ahg327837 jgi|Araly1|327837|fgenesh1_pm.C_scaffold_7000064 1321 0.0 Ahg931965 jgi|Araly1|931965|scaffold_304422.1 99.0 8e-20 Ahg932134 jgi|Araly1|932134|scaffold_400122.1 67.6 2e-10 > Ahg327837 jgi|Araly1|327837|fgenesh1_pm.C_scaffold_7000064 Length=1200 Score = 1321 bits (715), Expect = 0.0 Identities = 960/1077 (89%), Gaps = 21/1077 (2%) Strand=Plus/Plus Query 214 AGATTCCTT-TGTGTATCTAAGCTATGGGCTTCTATAATCCGTGATCCG-TATTTCATGA 271 ||||| ||| || ||||||||||| |||||||| | ||||||| | ||| |||||||||| Sbjct 136 AGATT-CTTGTGCGTATCTAAGCTCTGGGCTTCCAGAATCCGT-AGCCGATATTTCATGA 193 Query 272 AATTGTTCCTCAATGAGTCCTTGAAAAGACCCAAAAGTCTTGTATTTGTATTCAGAGCAC 331 ||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||||| | Sbjct 194 AATTGTTTCTCAACGAGTCCTTAAAAAGACCCATAAGTCTTGTATTCGTATTCAGAG-AT 252 Query 332 AA-TCTTTGGGTTCAATCTTCTCATCCGTTCACCTTAAAAGTACACGC-G-AGATatcat 388 || ||| |||||| || | |||||||||||||||| |||||||||| | | || ||||| Sbjct 253 AATTCTCTGGGTTTAACCATCTCATCCGTTCACCTCAAAAGTACAC-CTGAAG-CATCAT 310 Query 389 catcatcatcatcatcTTCTGCTTCTTCAATCACTTACCATGTGACTTGCTACACTCA-A 447 |||||||||||||||||||||||||| |||||| |||||||||||||| | |||| || | Sbjct 311 CATCATCATCATCATCTTCTGCTTCTCCAATCATTTACCATGTGACTTTCCACAC-CAGA 369 Query 448 CAACGCATGACCATTTCTCCTTCCGTCCACGGTTTGATATGCTATGGACCACCTTCTAGC 507 ||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||| | Sbjct 370 CAACGCACGACCATTGCTCCTTCTGTCCACGGTTTGATTTGCTATGGACCACCTTCTACC 429 Query 508 CTCGTCATATATAACCCCTGCACTAGACGATCAATTACCTTGCCCAAGATCAAAGCAGGG 567 || ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 430 CTTGTCGTATATAACCCTTGCACTAGACGATCAATTACCTTGCCCAAGATCAAAGCAGGG 489 Query 568 AGGAGAGCCATAAACCAATACATAGGCTATGATCCCCTTGACGGTAATTATAAAGTGGTG 627 ||||||||||||||||||||| |||||||||||||| | || | ||||||||||| || Sbjct 490 AGGAGAGCCATAAACCAATACTTAGGCTATGATCCCATCAACAATGATTATAAAGTGTTG 549 Query 628 TGCATTACGAGAGGCATGCCTATGCTTAGGAATAGACGCGGTTTAGCTGAGGAGATACAG 687 |||||||||||||||||||||| ||| || || |||||||||||||||||||||||||| Sbjct 550 TGCATTACGAGAGGCATGCCTAAGCTGAGAAACAGACGCGGTTTAGCTGAGGAGATACAA 609 Query 688 GTTTTGACATTGGGAACTCGGGATTCATCATGGAGGATGATTCATGATATTATTCCTCCT 747 |||||||||||||||||||| ||||||| ||||||||||||| || |||||||||||| Sbjct 610 GTTTTGACATTGGGAACTCGAGATTCAT---GGAGGATGATTCAAGACATTATTCCTCCT 666 Query 748 CACTCTCCTGTAAGTGAAGAACTTTGCATCAACGGTGTTTTGTATTATCGAGCTTTTATT 807 ||||||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||| Sbjct 667 CACTCTCCTGTAACTGAGGAACTTTGCATCAATGGTGTTTTGTATTATCAAGCTTTTATT 726 Query 808 GGCACAAAACTAAATGAGTCTGCAATCATGAGTTTTGATGTTAGGTCTGAAAAATTTGAT 867 |||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 727 GGCACAAATCTAACTAAGTCTGCAATCATGAGTTTTGATGTTAGGTCTGAAAAACTTGAT 786 Query 868 CTTATCAAAGTACCTTGCAACTTTCGTAGTTTTTCAAAGTTGGCAAAATATGAGGGAAAA 927 |||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 787 CTTATCAAAGGACCTTGCAACTTTCGTAGTTTTTCAAAGTTGACAAACTATGAGGGAAAG 846 Query 928 CTGGCTGTCATCTTCTATGAAAAGAAAA-CGAGTGGTATTATTGGTTTGTGGATTCTGGA 986 || |||||||||||||||||||||||| | ||| ||||||||||||||||| |||| | Sbjct 847 CTAGCTGTCATCTTCTATGAAAAGAAAGTC-AGTAGTATTATTGGTTTGTGGGTTCTACA 905 Query 987 AGATGCTTCTAATGG-GGAATGGTCGAAGAAGACTTTTGCATTGCCTAATCTAGCTGCCT 1045 |||||| ||||| || |||||||||||||||||| |||| ||||||||||||||||||| Sbjct 906 AGATGCATCTAA-GGAGGAATGGTCGAAGAAGACCTTTGTTTTGCCTAATCTAGCTGCCT 964 Query 1046 CATCAACAAACTCGCGTATTCTTAAGCTTCAAAAGTTCCGTACAACTGACGCTGACACAT 1105 || |||||||||||| |||||||| | |||| ||||| || || |||||||||||||| Sbjct 965 CAGCAACAAACTCGCATATTCTTAGGTTTCACAAGTTTCGCACCACTGACGCTGACACGG 1024 Query 1106 GTGAGATTATTTTCACACCATCTTATGCGCATTCATCACTATCTAGTGCTATTTATTGTG 1165 ||||||||||||| |||||| ||| || ||||||||||||||| |||||| | ||||||| Sbjct 1025 GTGAGATTATTTTTACACCAACTTTTGTGCATTCATCACTATCCAGTGCTGTCTATTGTG 1084 Query 1166 ATCTGAAGGAA-AATAAAGTGAGAAAATTTGTAAAAGAAGGATGGACAGAGAACTATCTA 1224 |||||||| || |||| ||||||||| ||||||||||||||| || ||| | ||| || Sbjct 1085 ATCTGAAG-AACAATAGAGTGAGAAATTTTGTAAAAGAAGGAACCACGGAGCATTATATA 1143 Query 1225 CCATGTAATGCAGACTCAGTTTCCTCTACTCAGGTTGAGAATCTCATGTTTCTATGA 1281 | |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1144 CGATGTCATGCAGACTCTGTTTCCTCTACTCAGGTTGAGAATCTCATGTTTCTATGA 1200 Score = 180 bits (97), Expect = 3e-44 Identities = 124/137 (91%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 1 ATGAAGACTTTAGGGTTTTCACCTAAACAAAAGTTTTGTGCTAGACGGCAAA-CGCAAAG 59 |||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 1 ATGAAGGCTTTAGGGTTTTCACCTAAACAAAAGTTTTGTGCTAGAAGGCAAAACGCAAAG 60 Query 60 GTGGCTGCCAGAGGGAGATCGATCGTCATCTTTCACGCC-CTCCACCATGGAAACACAGA 118 |||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||| Sbjct 61 GTGGCTGCTGGAGGGAGATCGATCTTCATCTTTCACGTTTCTCCAGCATGGAAACACAGA 120 Query 119 GAAAGAAGTTTACAAAG 135 | || ||| |||||||| Sbjct 121 GGAATAAGCTTACAAAG 137 > Ahg931965 jgi|Araly1|931965|scaffold_304422.1 Length=758 Score = 99.0 bits (53), Expect = 8e-20 Identities = 182/243 (75%), Gaps = 14/243 (6%) Strand=Plus/Plus Query 518 ATAACCCCT-GCACTAGACGATCAATTACCT-TGCCCAAGATCAAAGCAGGGAGGAGAGC 575 |||| | || ||||||||||||| |||| || |||||||||| | | |||||||| Sbjct 52 ATAAACTCTAGCACTAGACGATCTATTA-CTCTGCCCAAGATTTATTCTCAGAGGAGAGA 110 Query 576 CATAAACCAATACATAGGCTATGATCCCCTTGACGGTAATTATAAAGTGGTGTGCATTAC 635 || |||| ||| ||| ||||||||| || | ||| |||| ||||| |||| || || Sbjct 111 TATGTACCACTACTTAGATTATGATCCCATTCATGGTGATTACAAAGTTTTGTGTATGAC 170 Query 636 GAGAGGCATGCCTA-TGCTTAGGAATAGACGCGGTTTAGCTGAGGAGATACAGGTTTTGA 694 | ||| ||| || || || || |||| |||||||||||||| | | |||||||| Sbjct 171 TAAAGGAATGAATATTGGTT-GG---CGACGTGGTTTAGCTGAGGACCTTCGGGTTTTGA 226 Query 695 CATTGGGAACTCGGGATTCATCATGGAGGATGATTCATGATATTATTCCTCCTCACTCTC 754 ||||||||| | |||| | || |||||||||||| | | ||| | ||||||||| | | Sbjct 227 CATTGGGAAAT-GGGA-GC-TCTTGGAGGATGATTGA--AGATT-TCCCTCCTCACGCAC 280 Query 755 CTG 757 ||| Sbjct 281 CTG 283 > Ahg932134 jgi|Araly1|932134|scaffold_400122.1 Length=618 Score = 67.6 bits (36), Expect = 2e-10 Identities = 51/58 (88%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 821 ATGAGTC-TGCAATCATGAGTTTTGATGTTAGGTCTGAAAAATTTGATCTTATCAAAG 877 ||||||| |||||||||||||||||||||||||||||||| ||| |||| | |||| Sbjct 21 ATGAGTCAAGCAATCATGAGTTTTGATGTTAGGTCTGAAAAGTTTCTTCTTGT-AAAG 77 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47882383752 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5