BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38870.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327837 jgi|Araly1|327837|fgenesh1_pm.C_scaffold_7000064 1321 0.0
Ahg931965 jgi|Araly1|931965|scaffold_304422.1 99.0 8e-20
Ahg932134 jgi|Araly1|932134|scaffold_400122.1 67.6 2e-10
> Ahg327837 jgi|Araly1|327837|fgenesh1_pm.C_scaffold_7000064
Length=1200
Score = 1321 bits (715), Expect = 0.0
Identities = 960/1077 (89%), Gaps = 21/1077 (2%)
Strand=Plus/Plus
Query 214 AGATTCCTT-TGTGTATCTAAGCTATGGGCTTCTATAATCCGTGATCCG-TATTTCATGA 271
||||| ||| || ||||||||||| |||||||| | ||||||| | ||| ||||||||||
Sbjct 136 AGATT-CTTGTGCGTATCTAAGCTCTGGGCTTCCAGAATCCGT-AGCCGATATTTCATGA 193
Query 272 AATTGTTCCTCAATGAGTCCTTGAAAAGACCCAAAAGTCTTGTATTTGTATTCAGAGCAC 331
||||||| ||||| |||||||| |||||||||| |||||||||||| |||||||||| |
Sbjct 194 AATTGTTTCTCAACGAGTCCTTAAAAAGACCCATAAGTCTTGTATTCGTATTCAGAG-AT 252
Query 332 AA-TCTTTGGGTTCAATCTTCTCATCCGTTCACCTTAAAAGTACACGC-G-AGATatcat 388
|| ||| |||||| || | |||||||||||||||| |||||||||| | | || |||||
Sbjct 253 AATTCTCTGGGTTTAACCATCTCATCCGTTCACCTCAAAAGTACAC-CTGAAG-CATCAT 310
Query 389 catcatcatcatcatcTTCTGCTTCTTCAATCACTTACCATGTGACTTGCTACACTCA-A 447
|||||||||||||||||||||||||| |||||| |||||||||||||| | |||| || |
Sbjct 311 CATCATCATCATCATCTTCTGCTTCTCCAATCATTTACCATGTGACTTTCCACAC-CAGA 369
Query 448 CAACGCATGACCATTTCTCCTTCCGTCCACGGTTTGATATGCTATGGACCACCTTCTAGC 507
||||||| ||||||| ||||||| |||||||||||||| ||||||||||||||||||| |
Sbjct 370 CAACGCACGACCATTGCTCCTTCTGTCCACGGTTTGATTTGCTATGGACCACCTTCTACC 429
Query 508 CTCGTCATATATAACCCCTGCACTAGACGATCAATTACCTTGCCCAAGATCAAAGCAGGG 567
|| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CTTGTCGTATATAACCCTTGCACTAGACGATCAATTACCTTGCCCAAGATCAAAGCAGGG 489
Query 568 AGGAGAGCCATAAACCAATACATAGGCTATGATCCCCTTGACGGTAATTATAAAGTGGTG 627
||||||||||||||||||||| |||||||||||||| | || | ||||||||||| ||
Sbjct 490 AGGAGAGCCATAAACCAATACTTAGGCTATGATCCCATCAACAATGATTATAAAGTGTTG 549
Query 628 TGCATTACGAGAGGCATGCCTATGCTTAGGAATAGACGCGGTTTAGCTGAGGAGATACAG 687
|||||||||||||||||||||| ||| || || ||||||||||||||||||||||||||
Sbjct 550 TGCATTACGAGAGGCATGCCTAAGCTGAGAAACAGACGCGGTTTAGCTGAGGAGATACAA 609
Query 688 GTTTTGACATTGGGAACTCGGGATTCATCATGGAGGATGATTCATGATATTATTCCTCCT 747
|||||||||||||||||||| ||||||| ||||||||||||| || ||||||||||||
Sbjct 610 GTTTTGACATTGGGAACTCGAGATTCAT---GGAGGATGATTCAAGACATTATTCCTCCT 666
Query 748 CACTCTCCTGTAAGTGAAGAACTTTGCATCAACGGTGTTTTGTATTATCGAGCTTTTATT 807
||||||||||||| ||| |||||||||||||| |||||||||||||||| ||||||||||
Sbjct 667 CACTCTCCTGTAACTGAGGAACTTTGCATCAATGGTGTTTTGTATTATCAAGCTTTTATT 726
Query 808 GGCACAAAACTAAATGAGTCTGCAATCATGAGTTTTGATGTTAGGTCTGAAAAATTTGAT 867
|||||||| |||| | |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 727 GGCACAAATCTAACTAAGTCTGCAATCATGAGTTTTGATGTTAGGTCTGAAAAACTTGAT 786
Query 868 CTTATCAAAGTACCTTGCAACTTTCGTAGTTTTTCAAAGTTGGCAAAATATGAGGGAAAA 927
|||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 787 CTTATCAAAGGACCTTGCAACTTTCGTAGTTTTTCAAAGTTGACAAACTATGAGGGAAAG 846
Query 928 CTGGCTGTCATCTTCTATGAAAAGAAAA-CGAGTGGTATTATTGGTTTGTGGATTCTGGA 986
|| |||||||||||||||||||||||| | ||| ||||||||||||||||| |||| |
Sbjct 847 CTAGCTGTCATCTTCTATGAAAAGAAAGTC-AGTAGTATTATTGGTTTGTGGGTTCTACA 905
Query 987 AGATGCTTCTAATGG-GGAATGGTCGAAGAAGACTTTTGCATTGCCTAATCTAGCTGCCT 1045
|||||| ||||| || |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 906 AGATGCATCTAA-GGAGGAATGGTCGAAGAAGACCTTTGTTTTGCCTAATCTAGCTGCCT 964
Query 1046 CATCAACAAACTCGCGTATTCTTAAGCTTCAAAAGTTCCGTACAACTGACGCTGACACAT 1105
|| |||||||||||| |||||||| | |||| ||||| || || ||||||||||||||
Sbjct 965 CAGCAACAAACTCGCATATTCTTAGGTTTCACAAGTTTCGCACCACTGACGCTGACACGG 1024
Query 1106 GTGAGATTATTTTCACACCATCTTATGCGCATTCATCACTATCTAGTGCTATTTATTGTG 1165
||||||||||||| |||||| ||| || ||||||||||||||| |||||| | |||||||
Sbjct 1025 GTGAGATTATTTTTACACCAACTTTTGTGCATTCATCACTATCCAGTGCTGTCTATTGTG 1084
Query 1166 ATCTGAAGGAA-AATAAAGTGAGAAAATTTGTAAAAGAAGGATGGACAGAGAACTATCTA 1224
|||||||| || |||| ||||||||| ||||||||||||||| || ||| | ||| ||
Sbjct 1085 ATCTGAAG-AACAATAGAGTGAGAAATTTTGTAAAAGAAGGAACCACGGAGCATTATATA 1143
Query 1225 CCATGTAATGCAGACTCAGTTTCCTCTACTCAGGTTGAGAATCTCATGTTTCTATGA 1281
| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1144 CGATGTCATGCAGACTCTGTTTCCTCTACTCAGGTTGAGAATCTCATGTTTCTATGA 1200
Score = 180 bits (97), Expect = 3e-44
Identities = 124/137 (91%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 1 ATGAAGACTTTAGGGTTTTCACCTAAACAAAAGTTTTGTGCTAGACGGCAAA-CGCAAAG 59
|||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1 ATGAAGGCTTTAGGGTTTTCACCTAAACAAAAGTTTTGTGCTAGAAGGCAAAACGCAAAG 60
Query 60 GTGGCTGCCAGAGGGAGATCGATCGTCATCTTTCACGCC-CTCCACCATGGAAACACAGA 118
|||||||| |||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 61 GTGGCTGCTGGAGGGAGATCGATCTTCATCTTTCACGTTTCTCCAGCATGGAAACACAGA 120
Query 119 GAAAGAAGTTTACAAAG 135
| || ||| ||||||||
Sbjct 121 GGAATAAGCTTACAAAG 137
> Ahg931965 jgi|Araly1|931965|scaffold_304422.1
Length=758
Score = 99.0 bits (53), Expect = 8e-20
Identities = 182/243 (75%), Gaps = 14/243 (6%)
Strand=Plus/Plus
Query 518 ATAACCCCT-GCACTAGACGATCAATTACCT-TGCCCAAGATCAAAGCAGGGAGGAGAGC 575
|||| | || ||||||||||||| |||| || |||||||||| | | ||||||||
Sbjct 52 ATAAACTCTAGCACTAGACGATCTATTA-CTCTGCCCAAGATTTATTCTCAGAGGAGAGA 110
Query 576 CATAAACCAATACATAGGCTATGATCCCCTTGACGGTAATTATAAAGTGGTGTGCATTAC 635
|| |||| ||| ||| ||||||||| || | ||| |||| ||||| |||| || ||
Sbjct 111 TATGTACCACTACTTAGATTATGATCCCATTCATGGTGATTACAAAGTTTTGTGTATGAC 170
Query 636 GAGAGGCATGCCTA-TGCTTAGGAATAGACGCGGTTTAGCTGAGGAGATACAGGTTTTGA 694
| ||| ||| || || || || |||| |||||||||||||| | | ||||||||
Sbjct 171 TAAAGGAATGAATATTGGTT-GG---CGACGTGGTTTAGCTGAGGACCTTCGGGTTTTGA 226
Query 695 CATTGGGAACTCGGGATTCATCATGGAGGATGATTCATGATATTATTCCTCCTCACTCTC 754
||||||||| | |||| | || |||||||||||| | | ||| | ||||||||| | |
Sbjct 227 CATTGGGAAAT-GGGA-GC-TCTTGGAGGATGATTGA--AGATT-TCCCTCCTCACGCAC 280
Query 755 CTG 757
|||
Sbjct 281 CTG 283
> Ahg932134 jgi|Araly1|932134|scaffold_400122.1
Length=618
Score = 67.6 bits (36), Expect = 2e-10
Identities = 51/58 (88%), Gaps = 2/58 (3%)
Strand=Plus/Plus
Query 821 ATGAGTC-TGCAATCATGAGTTTTGATGTTAGGTCTGAAAAATTTGATCTTATCAAAG 877
||||||| |||||||||||||||||||||||||||||||| ||| |||| | ||||
Sbjct 21 ATGAGTCAAGCAATCATGAGTTTTGATGTTAGGTCTGAAAAGTTTCTTCTTGT-AAAG 77
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5