BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38880.1
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943852 jgi|Araly1|943852|scaffold_700081.1 2484 0.0
> Ahg943852 jgi|Araly1|943852|scaffold_700081.1
Length=1643
Score = 2484 bits (1345), Expect = 0.0
Identities = 1524/1609 (95%), Gaps = 17/1609 (1%)
Strand=Plus/Plus
Query 1 ATGGCCTTCTCTGTAGAAGAAATCTCGTCTATTCTC-CCTAACAGTTTATCCGCAAACCC 59
|||||||||||||| |||||||||||||| |||| ||| ||| ||||||||||||||
Sbjct 22 ATGGCCTTCTCTGT---AGAAATCTCGTCTA-TCTCTCCTTACACTTTATCCGCAAACCT 77
Query 60 TAGGAATGTTTCTCAAAATACTATTTCCCCTTCCTTTTTCAAGCCCTCCCTTAAACCGTA 119
|||||| ||||||| |||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 78 TAGGAACGTTTCTCGAAATACCATTTTCCCTTCCTTTTTCAAGCCCTCCCTTAAACCCTA 137
Query 120 CGCTTCCAAAACCCT-A--ATCTCAT-TGTCATGTAGACGCTCACTTTCCCCTGTTTTCT 175
|| |||||||||||| | ||||| | | ||||| |||| | ||||||||||||||||||
Sbjct 138 CGTTTCCAAAACCCTAAGTATCTC-TGTTTCATGCAGACACCCACTTTCCCCTGTTTTCT 196
Query 176 CGGCGGGAACATATGTCACTAACGTTGACGAAGATGACAAGCTTCACGAAGAATGCGGAG 235
||||| ||||| |||||||| ||| |||||||||||||||| |||||||||||||||||
Sbjct 197 CGGCGAGAACACATGTCACTGACGAAGACGAAGATGACAAGCCTCACGAAGAATGCGGAG 256
Query 236 TTGTCGGAATCCATGGAGACCCTGAAGCTTCCCGTCTCTCTTACTTGGCTCTACACGCAC 295
|||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||
Sbjct 257 TTGTCGGAATCCATGGAGACCCTGAAGCTTCCCGGCTTTCTTACTTGGCTCTTCACGCAC 316
Query 296 TGCAACACCGTGGCCAAGAAGGAGCAGGAATTGTAGCCGCTAATCAAAACGGTCTCGAAT 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TGCAACACCGTGGCCAAGAAGGAGCAGGAATTGTAGCCGCTAATCAAAACGGTCTCGAAT 376
Query 356 CAATCACAGGGGTCGGATTAGTCTCAGATGTGTTCACCGAGTCAAAACTAAACAATCTTC 415
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 377 CAATCACAGGGGTCGGATTAGTCTCAGATGTGTTCACCGAGTCAAAACTAAAAAATCTTC 436
Query 416 CTGGCGACATAGCGATAGGGCATGTCCGGTACTCAACTTCCGGAGCCTCTATGCTCAAGA 475
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 437 CTGGCGACATAGCGATAGGGCATGTCCGGTACTCAACTTCCGGAGCTTCAATGCTCAAGA 496
Query 476 ATGTTCAGCCTTTCATCGCTAGCTGCAAGCTAGGATCACTCGCAGTAGCT-CACAATGGT 534
|||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||
Sbjct 497 ATGTTCAGCCTTTCATCGCTAGCTGCAAGCTAGGATCACTTGCAGTAG-TGCACAATGGT 555
Query 535 AATTTCGTGAATTACAAGCAACTGAAGACAAAGCTCGAGGAGATGGGTTCAATCTTCATC 594
||||||||||||||||||||||||||||||||||| || |||| ||| ||||||||||||
Sbjct 556 AATTTCGTGAATTACAAGCAACTGAAGACAAAGCTGGAAGAGAAGGGCTCAATCTTCATC 615
Query 595 ACAAGTTCTGATACCGAGCTCGTTCTTCACCTGATCGCCAAATCTAAGGCTAAGACGTTT 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 ACAAGTTCTGATACCGAGCTCGTTCTTCACCTGATCGCCAAATCTAAGGCTAAGACGTTT 675
Query 655 CTTTTGAGGGTCATTGATGCTTGTGAGAAGCTTAGAGGTGCTTACTCGATGGTTTTCGTC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 CTTTTGAGGGTCATTGATGCTTGTGAGAAGCTTAGAGGTGCTTACTCGATGGTTTTCGTC 735
Query 715 TTTGAAGACAAGCTTATTGCTGTTCGTGACCCTTTTGGGTTTAGACCACTTGTGATGGGC 774
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 736 TTTGAAGACAAGCTTATTGCTGTTCGTGACCCGTTTGGGTTTAGACCACTTGTGATGGGC 795
Query 775 AGAAGAAGCAACGGAGCAGTTGTTTTTGCCTCCGAGACTTGTGCTCTGGACCTGATTGAT 834
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 796 AGAAGAAGCAACGGAGCAGTTGTTTTTGCCTCCGAGACTTGCGCTCTGGACCTGATTGAT 855
Query 835 GCGACTTATGAACGTGAAGTGTGTCCCGGTGAGATTGTGGTCGTGGATAGAAACCATGGA 894
|| | |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
Sbjct 856 GCTATTTATGAACGTGAAGTGTGTCCCGGAGAGATTGTGGTGGTGGATAGAAATCATGGA 915
Query 895 GACAGTTCAATGTTCATGATCTCTCACCCTGAAC-AGAAACAGTGCGTTTTTGAGCATGG 953
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 916 GACAGTTCAATGTTCATGATCTCTCACCCTGAACCA-AAACAGTGCGTTTTTGAGCATGG 974
Query 954 TTACTTCTCACAGCCCAACTCAATTGTCTTTGGCCGTTCTGTGTATGAAACACGCCGCAT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TTACTTCTCACAGCCCAACTCAATTGTCTTTGGCCGTTCTGTGTATGAAACACGCCGCAT 1034
Query 1014 GTACGGCGAGATCCTAGCCACCGTGGCACCTGTCGATTGTGATGTTGTCATTGCAGTGCC 1073
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1035 GTACGGCGAGATCCTAGCCACCGTGGCACCTGTCGATTGTGATGTCGTCATCGCAGTGCC 1094
Query 1074 AGACTCGGGGACAGTGGCTGCTCTTGGATATGCAGCCAAAGCTGGAGTGCCGTTCCAGAT 1133
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 AGACTCGGGGACAGTGGCAGCTCTTGGATATGCAGCCAAAGCTGGAGTGCCGTTCCAGAT 1154
Query 1134 TGGTCTTCTGAGATCACACTATGCTAAACGTACGTTTATAGAGCCGACTCAGGAAATCCG 1193
||||||||| || ||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 1155 TGGTCTTCTCAGGTCACACTATGCAAAACGCACGTTTATAGAGCCGACTCAGAAAATCCG 1214
Query 1194 TGATTTTGCAGTGAAGGTGAAGCTATCTCCTGTTCGAGCAGTCCTTGAAGGGAAGCGGGT 1253
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1215 TGATTTCGCGGTGAAGGTGAAGCTATCTCCTGTCCGAGCAGTCCTTGAAGGGAAGCGGGT 1274
Query 1254 GGTAGTAGTGGACGACTCTATTGTCCGCGGTACCACGAGTTTGAAGATAGTTCGGATGCT 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1275 GGTAGTAGTGGACGACTCTATTGTCCGCGGTACCACGAGTTTGAAGATAGTTCGGATGCT 1334
Query 1314 TAGAGATGCCGGAGCAAAGGAGGTTCATATGAGAATCGCATTGCCGCCGATGATTGCATC 1373
|||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 1335 TAGAGACGCCGGAGCAAAGGAGGTTCATATGAGAGTCGCATTGCCACCGATGATTGCATC 1394
Query 1374 GTGTTACTATGGAGTGGACACCCCGAGGAGCCAAGAGTTGATCTCTAGTAAGATGAGCGT 1433
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TTGTTACTACGGAGTGGACACCCCGAGGAGCCAAGAGTTGATCTCTAGTAAGATGAGCGT 1454
Query 1434 TGAGGCGATCCAGAAGCATATTAATTGTGATTCTTTGGCGTTTCTACCATTAGATAGCTT 1493
|||||| |||||||||||||| |||||||||||| |||||||||||||||||||| ||||
Sbjct 1455 TGAGGCAATCCAGAAGCATATCAATTGTGATTCTCTGGCGTTTCTACCATTAGATTGCTT 1514
Query 1494 GAAAGGAGTCTATGGACCAGTCGAGTCACACAGGTATTGCTATGCCTGCTTTACTGGGAA 1553
| ||| |||||||||||| || ||||||| ||||||||||||||||||||||||||| ||
Sbjct 1515 GGAAGAAGTCTATGGACCGGTAGAGTCACGCAGGTATTGCTATGCCTGCTTTACTGGTAA 1574
Query 1554 GTACCCTGTGACCAAAACAGAGTCTGAGGAGG---CCGACGCTTCATGA 1599
|||||| |||||| | ||||| ||||||||| ||||||||||||||
Sbjct 1575 GTACCCGGTGACCGCACCAGAGACTGAGGAGGAGGCCGACGCTTCATGA 1623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59915955385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5