BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38900.1
Length=2251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg888090 jgi|Araly1|888090|Al_scaffold_0007_76 2516 0.0
> Ahg888090 jgi|Araly1|888090|Al_scaffold_0007_76
Length=1710
Score = 2516 bits (1362), Expect = 0.0
Identities = 1604/1712 (94%), Gaps = 52/1712 (3%)
Strand=Plus/Plus
Query 321 ATGGGTGATACAGAGAA--GT-GTAACAGTGATATGATCCAGAGACTTCATTCATCTTTC 377
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGTGATACAGAGAAGTGTAGTAACAGTGATATGATCCAGAGACTTCATTCATCTTTC 60
Query 378 GGCACTA-CTTCTTCTTCCATTCCCAAAAATCCCATTTCTCAGCTCGATTTAAACCCTAA 436
||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 GGCAC-ATCGTCTTCTTCCATTCCCAAAAATTCCATTTCTCAGCTCGATTTAAACCCTAA 119
Query 437 TTTCATCCGCTCATCAGCTCCTCAATTCTCCAAGCCTTTCAGTGACAGTGGCAAACGAAT 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTCATCCGCTCATCAGCTCCTCAATTCTCCAAGCCTTTCAGTGACAGTGGCAAACGAAT 179
Query 497 CGGTGTTCCTCCGTCGCACCCCAACTTAATCCCACCGACTTCTCCGTTTTCTCAGATCCC 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CGGTGTTCCTCCGTCGCACCCCAACTTAATCCCACCGACTTCTCCGTTTTCTCAGATCCC 239
Query 557 GACCACCCGACAACCCGGTTCGCATAATTTTAACCCGGGAGGAGCTAATCATTCACGGTC 616
||||||||||||||||| ||||| |||||||||||||||| ||||| |||||| |||||
Sbjct 240 GACCACCCGACAACCCGCTTCGCTTAATTTTAACCCGGGATCAGCTAGTCATTCGCGGTC 299
Query 617 AATGTCACAGCCCAACTCTTTCTTCTCTTTTGACTCCTTACCTCCGTTAAGCCC-T-T-C 673
||||||||||||||||||||||||||| || || || ||||||||||||||||| | | |
Sbjct 300 AATGTCACAGCCCAACTCTTTCTTCTCCTTCGATTCGTTACCTCCGTTAAGCCCTTCTCC 359
Query 674 ---TC-CG----T-T-TC-G-------AGATCACGATGTTTCAATGGAGGATAGAGATTC 715
|| || | | || | |||||||||||| || |||||||||||||||||
Sbjct 360 GTTTCGCGATTCTCTGTCGGCACAACCAGATCACGATGTCTCCATGGAGGATAGAGATTC 419
Query 716 CGGCGTGTTTAACAGCAACCATTCGTTGCCTCCATCGCCGTTCACGAGGTGTAATTCGAC 775
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 420 CGGCGGGTTTAACAGCAACCATTCGTTGCCTCCATCGCCGTTCACGAGGTGTAACTCGAC 479
Query 776 CTCTTCTAGCTCCTTGAGAGTCGGTGAGAGTTTACCTCCGAGAAAGTCTCATAGACGCTC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTCTTCTAGCTCCTTGAGAGTCGGTGAGAGTTTACCTCCGAGAAAGTCTCATAGACGCTC 539
Query 836 CAACAGTGATATCCCCAGTGGG--T--TT--A--A---TTC-G-A-----TGCCTTTGAT 877
|||||||||||| ||||||||| | || | | ||| | | ||||||||||
Sbjct 540 CAACAGTGATATTCCCAGTGGGTTTAATTCCATGATTGTTCAGAATTCGTTGCCTTTGAT 599
Query 878 CCCTCCGAGACCATTGGAGAGGTCTTTTTCTGGTGGGGAGTGTGCTGATTGGTCAAAGTC 937
||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 600 TCCTCCAAGACCATTGGAGAGGTCTATTTCTGGTGGGGAATGTGCTGATTGGTCAAAGTC 659
Query 938 TAATCCTTTTGTGAAGAAGGAATCGAGCTGCGAAAGGGAAGGTGTCGGAGAGAGAGAAGC 997
| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 660 TTCTCCTTTTGTGAAGAAGGAATCGAGCTGCGAAAGAGAAGGCGTCGGAGAGAGAGAAGC 719
Query 998 TATGGATGATCTCTTCTCAGCATATATGAATCTTGAAAACATTGATGTGTTGAACTCCTC 1057
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 AATGGATGATCTCTTCTCAGCATATATGAATCTTGAAAACATTGATGTTTTGAACTCCTC 779
Query 1058 TGAAGCTGATGATAGCAAGAACGGTAATGAGAATAGGGATGATATGGAGAGCAGCAGAGC 1117
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGAGGCTGATGATAGCAAGAACGGTAATGAGAATAGGGATGATATGGAGAGCAGCAGAGC 839
Query 1118 AAGCGGGACCAAGACTAACGGTAGTGATACGGAAGGAGAGAGCAGCAGTGTCAATGAGAG 1177
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 840 AAGCGGGACGAAGACTAACGGTAGTGATACCGAAGGAGAGAGCAGCAGTGTGAATGAGAG 899
Query 1178 TGCCAATAAT---AAT-A--TGAATTCTTCTGGTGAAAAGAGAGAGAGCGTGAAGAGAAG 1231
||| |||||| ||| | |||||||||| ||||||||||||||||| |||||||||||
Sbjct 900 TGCGAATAATAACAATAATTTGAATTCTTCGGGTGAAAAGAGAGAGAGTGTGAAGAGAAG 959
Query 1232 AGCGGCTGGAGGAGATATTGCTCCTACCACCAGACATTACAGGAGTGTTTCAGTGGACAG 1291
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 AGCGGCAGGAGGAGATATTGCTCCTACCACCAGACATTACAGGAGTGTTTCAGTGGACAG 1019
Query 1292 TTGTTTCATGGAGAAGTTGTCTTTTGGTGATGAATCTCTAAAGCCGCCTCCTTCTCCTGG 1351
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1020 TTGTTTCATGGAGAAGTTGTCTTTTGGTGATGAATCACTAAAGCCGCCTCCTTCTCCTGG 1079
Query 1352 ATCTATGTCAAGGAAAGTTTCCCCTACCAATTCGGTTGATGGGAACTCGGGTGCTGCTTT 1411
| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1080 AACTATGTCACGGAAAGTTTCCCCTACCAATTCGGTTGATGGGAATTCGGGTGCTGCTTT 1139
Query 1412 TAGCATCGAGTTCAATAACGGTGAGTTTACTGCAGCGGAAATGAAGAAGATCATGGCAAA 1471
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAGCATCGAGTTTAAGAACGGTGAGTTTACTGCAGCGGAAATGAAGAAGATCATGGCAAA 1199
Query 1472 TGATAAACTAGCAGAGATGGCCATGTCTGACCCTAAACGTGTCAAAAGGAATGATCCTCT 1531
|||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1200 TGATAAACTAGCGGAGATCGCCATGTCTGACCCTAAGCGTGTCAAAAGGAATGATCTTCT 1259
Query 1532 TTTCAGAATCTTAGCGAACCGTCAATCCGCAGCACGGTCAAAGGAGAGGAAGATGCGGTA 1591
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 TTTCAGAATCTTGGCGAACCGTCAATCCGCAGCACGGTCAAAGGAGAGGAAGATGCGGTA 1319
Query 1592 CATAGTAGAATTGGAACACAAAGTGCAGACTCTTCAGACCGAGGCTACCACATTGTCTGC 1651
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CATAGTCGAATTGGAACACAAAGTGCAGACTCTTCAGACCGAGGCTACCACATTGTCTGC 1379
Query 1652 TCAGCTCACACTTTTGCAGCGCGATATGATGGGGTTGACAAATCAGAACAATGAGCTTAA 1711
||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||
Sbjct 1380 TCAGCTCACGCTTTTGCAGCGAGATATGATTGGGTTCACAAATCAGAACAATGAGCTAAA 1439
Query 1712 GTTCCGGCTTCAAGCAATGGAGCAACAAGCGCGTCTTCGCGATGCTCTGAACGAAGCACT 1771
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GTTCCGTCTTCAAGCAATGGAGCAACAAGCGCGTCTTCGCGATGCTCTGAACGAAGCACT 1499
Query 1772 GAATGGAGAAGTCCAGCGACTGAAACTGGCAATCGGTGAGA-GCAGTCAGAACGAATCAG 1830
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1500 GAATGGAGAAGTCCAGCGACTGAAACTGGCAATCGGTGAGACG-AGTCAGAACGAATCAG 1558
Query 1831 AGAGATCAAAGATGCAATCACTCAACGCTGAGATGTTCCAGCAACTCAACATCAGCCAGT 1890
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1559 AGAGATCAAAGATGCAATCACTCAACGCTGAGATGTTCCAGCAACTAAACATCAGCCAGT 1618
Query 1891 TAAGACAGCAGCCACAACAGATGCAGCAACAGTCTCATCAGCAGAACCACCAGAATGGAA 1950
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 TAAGACAGCAGCCACAACAGATGCAGCAACAGTCTCATCAGCAGAACCACCAGAATGGAG 1678
Query 1951 CCATGGCAACAAAATCTGAATCAAATGAATAG 1982
||||||||||||||||||||||||| ||||||
Sbjct 1679 CCATGGCAACAAAATCTGAATCAAACGAATAG 1710
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84750795125
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5