BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38910.2
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327841 jgi|Araly1|327841|fgenesh1_pm.C_scaffold_7000068 1014 0.0
Ahg480982 jgi|Araly1|480982|fgenesh2_kg.4__42__AT2G21240.1 475 2e-133
Ahg925143 jgi|Araly1|925143|scaffold_200704.1 287 1e-76
> Ahg327841 jgi|Araly1|327841|fgenesh1_pm.C_scaffold_7000068
Length=1335
Score = 1014 bits (549), Expect = 0.0
Identities = 731/812 (90%), Gaps = 39/812 (5%)
Strand=Plus/Plus
Query 76 TTGAAAGTAAGAGGATGGAGAGTGGTGGGCAGTATGAAAATGGGCGCTACAAGCCCGATT 135
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 29 TTGAAAGTAAGAGAATGGAGAGTGGTGGGCTGTATGAAAATGGGCGCTACAAGCCCGATT 88
Query 136 ACTACAAAGGAACACAATCTGTG-A-AT-GTG-AT--GC--C-GAAAAAGGAGCAACATA 186
|| ||||||| |||||||||||| | || ||| | || | || ||||||||||||||
Sbjct 89 ACAACAAAGGGACACAATCTGTGAATATGGTGCCTCAGCATCAGATAAAGGAGCAACATA 148
Query 187 ATGCATTGGTGATGAATAAGAAGATCATCTCCATCCTTGCTGAGAGGGACGCAGCTGTCA 246
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 149 ATGCATTGGTGATGAATAAGAAGATCATGTCCATCCTTGCTGAGAGGGATGCAGCAGTCA 208
Query 247 AGGAAAGAAACGAAGCGGTTGCAGCAACTAAGGAAGCATTAGCCTCTCGTGATGAAGCAC 306
|||||| ||||||||| || |||||||| || |||||||||||| |||||||||||||||
Sbjct 209 AGGAAATAAACGAAGCCGTAGCAGCAACAAAAGAAGCATTAGCCGCTCGTGATGAAGCAC 268
Query 307 TTGAGCAGCGGGACAAAGCTCTCTCTGAAAGAGATAATGCTATCATGGAGACAGAAAGTG 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 TTGAGCAGCGGGACAAAGCTCTCTCTGAAAGAGATAATGCTATCATGGAGACAGAAAGTG 328
Query 367 CGTTAAATGCTCTTCGATACCGTGAAAACAATCTTAACTACATTTTGTCGTGTGCCAAGC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 CGTTAAATGCTCTTCGATACCGTGAAAACAATCTTAACTACATTTTGTCGTGTGCCAAGC 388
Query 427 GCGGTGGTTCCCAAAGGTT-TATAACTGAAGAAAGCCACTTACCTAATCCTTCCCCTATA 485
| ||||||||||| || || | ||||||| ||||||||||||||| ||||| ||||||
Sbjct 389 GTGGTGGTTCCCACAG-TTGTGTAACTGACGAAAGCCACTTACCTGCCCCTTCACCTATA 447
Query 486 TCAACTATTCCACCTGAAGCAGCCAACACGAGACC-GACCAAAAGGAAGAAAGAGAGCAA 544
|||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct 448 TCAACTATTCCACCTGAAGCAGCCAACACGAGACTAG-CCAAAAGGAAGAAAGAGAGTAA 506
Query 545 GCAGGGA--A--A-----G--AAA-A---TGGGCGAGGATCTGAACCGTCCAGTTGCTTC 589
||||||| | | | ||| | |||||||||||||||||| || |||||||||
Sbjct 507 GCAGGGAGCACGATCAAAGGGAAAGAAAGTGGGCGAGGATCTGAACCATCAAGTTGCTTC 566
Query 590 TCCCGGAAAGAAAAGCAGAAAGGATTGGGACAGTAACGATGTC--------C-TAGTCAC 640
||| ||||||||||||||||| |||||||||||| |||||||| | |||||||
Sbjct 567 TCCGGGAAAGAAAAGCAGAAAAGATTGGGACAGTTACGATGTCGGTTTAAACCTAGTCAC 626
Query 641 GTTCGATGAGATGACAATGCCAGTGCCCATGTGCACTTGCACCGGGACTGCTCGTCAGTG 700
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 ATTCGACGAGACGACAATGCCAGTGCCCATGTGCACTTGCACCGGGACTGCTCGTCAGTG 686
Query 701 TTATAAGTGGGGCAATGGCGGCTGGCAATCATCTTGCTGCACAACCACTTTGTCTGAGTA 760
||| |||||||| || ||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 687 TTACAAGTGGGGAAACGGCGGTTGGCAATCTTCTTGCTGCACAACCACTTTGTCTCAGTA 746
Query 761 TCCGCTCCCGCAGATGCCAAACAAGCGGCATTCCCGAGTTGGC-GGCAGGAAAATGAGTG 819
||||||||||||||||||||||||||||||||| ||||| ||| || ||||||||||| |
Sbjct 747 TCCGCTCCCGCAGATGCCAAACAAGCGGCATTCTCGAGT-GGCCGGTAGGAAAATGAGCG 805
Query 820 GAAGTGTCTTCTCCAGGTTACTTAGTCGTTTA 851
||||||||||||||||||||||||||||||||
Sbjct 806 GAAGTGTCTTCTCCAGGTTACTTAGTCGTTTA 837
> Ahg480982 jgi|Araly1|480982|fgenesh2_kg.4__42__AT2G21240.1
Length=1196
Score = 475 bits (257), Expect = 2e-133
Identities = 710/917 (77%), Gaps = 78/917 (9%)
Strand=Plus/Plus
Query 83 TAAGAG-GATGGAGAGTGGTGGGCAGTATGAAAATGGGCGCTACAAGCCCGATTACTACA 141
|||||| ||||||| |||||| |||||||| |||||||| | |||||||||||||| ||
Sbjct 182 TAAGAGTTATGGAGAATGGTGGTCAGTATGATAATGGGCGGTTCAAGCCCGATTACTTCA 241
Query 142 AAGGAACACAATC--TGT-GAATGTGATG-C-C-G-A--A-A--AAGGAGCAACATAATG 189
|||| ||||||| ||| |||| ||||| | | | | | | ||||| ||||||||||
Sbjct 242 AAGGTGCACAATCTATGTGGAATATGATGCCTCAGCATCAGATTAAGGAACAACATAATG 301
Query 190 CATTGGTGATGAATAAGAAGATCATCTCCATCCTTGCTGAGAGGGACGCAGCTGTCA-AG 248
| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||| | |
Sbjct 302 CCTTGGTGATGAATAAGAAGATCATGTCTATCCTTGCCGAGAGGGACGCTGCTGT-ACAT 360
Query 249 GAAA-GAAACGAAGCGGT-TGCAGC-AACTAAGGAAGCATTAGCCT-CTCGTGATGAAGC 304
|||| ||| | |||| || | | || || ||||||||| ||| || |||| || |||||
Sbjct 361 GAAAGGAATC-AAGCTGTCT-CTGCTAA-AAAGGAAGCAGTAG-CTGCTCGGGACGAAGC 416
Query 305 ACTTGAGCAGCGGGACAAAGCTCTCTCTGAAAGAGATAATGCTA-TCATGGAGACAGA-A 362
||| |||| |||||||||||||| |||||||||||||| || | | || |||| ||| |
Sbjct 417 CCTTCAGCAACGGGACAAAGCTCTTTCTGAAAGAGATAAAGC-ATTGATAGAGAGAGACA 475
Query 363 AGTGCGTTA-AATGCTCTTCGATACCGTGAAAACAATCTTAACTACATTTTGTCGT-GTG 420
| |||| || ||| |||| | ||| |||||| | ||| |||| |||||| | |||
Sbjct 476 A-TGCG-TATGCTGCGCTTCAACACCATGAAAATAGTCTCAACTTTGCTTTGTC-TGGTG 532
Query 421 CCAAGCGCGGTGGTTCCCA--AAGGTTT--ATAACTGAAGAAAGCCACTTACCT-AAT-C 474
||||| | || | | | |||| | | || |||| |||| | || ||
Sbjct 533 GGAAGCGTGTTGATGGAGATGATTGTTTCGGT-ATTGGAGAACCCCAC-AAACTCCATGT 590
Query 475 CTTCCCCTATATCAACTATTCCACCTGAAG-CAGCCAA---CACG-AGACCGACCAAAAG 529
| | |||| ||||||||||||| || || | | |||| ||| || ||| |||||
Sbjct 591 CGT-CCCTTTATCAACTATTCCGCCCGAGGTTA-CCAATGGTACGAAG-GTGACAAAAAG 647
Query 530 GAAGAAAGAGAGCAAGCAGGG------AAA---G-A-AAA-TGGGCGAGGATCTGAACCG 577
|||||| |||| ||||||||| ||| | | ||| |||| || ||||| |||||
Sbjct 648 GAAGAAGGAGAACAAGCAGGGACAATCAAAGGTGAAGAAAGTGGGTGAAGATCTCAACCG 707
Query 578 TCCAGTTGCTTCTCCCGGAAAGAAAAGC-AGAA-AGGATTGGGACAGT-AACGATGTC-- 632
|| ||||||| |||| |||||| ||| | |||| | |||||||||||| || ||||||
Sbjct 708 TCGAGTTGCTGCTCCTGGAAAG-AAATCTAGAACA-GATTGGGACAGTCAA-GATGTCGG 764
Query 633 ------C-TAGTCACGTTCGATGAGATGACAATGCCAGTGCCCATGTGCACTTGCACCGG 685
| ||||||| |||||||||| ||||||||| || |||||||| || ||||| ||
Sbjct 765 TTTGAACTTAGTCACCTTCGATGAGACGACAATGCCTGTACCCATGTGTACATGCACAGG 824
Query 686 GACTGCTCGTCAGTGTTATAAGTGGGGCAATGGCGGCTGGCAATCATCTTGCTGCACAAC 745
|||||| ||||||||| || ||||| ||||| ||||||||||||||||||||||||||
Sbjct 825 CTCTGCTCATCAGTGTTACAAATGGGGAAATGGAGGCTGGCAATCATCTTGCTGCACAAC 884
Query 746 CACTTTGTCTGAGTATCCGCTCCCGCAGATGCCAAACAAGCGGCATTCCCGAGTTGG-CG 804
||| || || ||||||| | |||||||||||||||||| ||||||| || | ||| ||
Sbjct 885 CACCTTATCCCAGTATCCATTACCGCAGATGCCAAACAAGAGGCATTCTCG-GATGGGCG 943
Query 805 GCAGGAAAATGAGTGGAAGTGTCTTCTCCAGGTTACTTAGTCGTTTAGCTGGTGAAGGGC 864
| |||||||||||||||| || ||||| || ||||| || |||||||| | |||||
Sbjct 944 GTAGGAAAATGAGTGGAAACGTTTTCTCGAGATTACTCAGCCGTTTAGCAGCAGAAGGAT 1003
Query 865 ATGAGCTTTCCTCTCCGGTTGATCTCAA-GAACTATTGGGCTAGGCACGGCACCAACCGC 923
|||| || || | ||| |||||||| || || |||||||||||||||||| || ||||||
Sbjct 1004 ATGATCTCTCGTGTCCTGTTGATCTTAAAGA-CTATTGGGCTAGGCACGGGACAAACCGC 1062
Query 924 TACATCACTATCAAGTA 940
|||||||||||||||||
Sbjct 1063 TACATCACTATCAAGTA 1079
> Ahg925143 jgi|Araly1|925143|scaffold_200704.1
Length=209
Score = 287 bits (155), Expect = 1e-76
Identities = 192/210 (91%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 753 TCTGAGTATCCGCTCCCGCAGATGCCAAACAAGCGGCATTCCCGAGTTG-GCGGCAGGAA 811
||| ||||||||||| ||||||||||||||||||||||||| |||| || |||| |||||
Sbjct 1 TCTCAGTATCCGCTCTCGCAGATGCCAAACAAGCGGCATTCTCGAG-TGTGCGGTAGGAA 59
Query 812 AATGAGTGGAAGTGTCTTCTCCAGGTTACTTAGTCGTTTAGCTGGTGAAGGGCATGAGCT 871
|||| |||||||||||||||||||||||||||||||||||||| |||||||| | |||
Sbjct 60 GGTGAGCGGAAGTGTCTTCTCCAGGTTACTTAGTCGTTTAGCTGGCGAAGGGCACGGGCT 119
Query 872 TTCCTCTCCGGTTGATCTCAAGAACTATTGGGCTAGGCACGGCACCAACCGCTACATCAC 931
||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 120 TTCTTCTCCACTTGATCTCAAGGACTATTGGGCTAGGCACGGCACAAACCGCTACATCAC 179
Query 932 TATCAAGTAACCAAGATTTATGAGCCAGTA 961
||||||||||||||||||||||| ||||||
Sbjct 180 TATCAAGTAACCAAGATTTATGACCCAGTA 209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5