BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38920.1
Length=1028
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943858 jgi|Araly1|943858|scaffold_700087.1 905 0.0
Ahg888595 jgi|Araly1|888595|Al_scaffold_0007_581 527 7e-149
> Ahg943858 jgi|Araly1|943858|scaffold_700087.1
Length=546
Score = 905 bits (490), Expect = 0.0
Identities = 529/548 (97%), Gaps = 2/548 (0%)
Strand=Plus/Plus
Query 98 AAGATCCAGAATCGCCTGAGAGATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTT 157
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGATCCAGAATCGCCT--GAGATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTT 58
Query 158 CGGCTTCCTTGGCGCTGCCGCTGCGCTCGTCTTCTCATGTATGGGAGCTGCGTACGGGAC 217
||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct 59 CGGCTTCCTTGGCGCTGCCGCAGCGCTTGTCTTCTCCTGTATGGGAGCTGCGTACGGGAC 118
Query 218 AGCAAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAA 277
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGCCAAGAGTGGTGTGGGAGTGGCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAA 178
Query 278 GTCTATTGTCCCAGTTGTTATGGCTGGTGTGTTGGGTATCTATGGTTTGATTATTGCTGT 337
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 179 GTCTATTGTCCCAGTTGTTATGGCTGGTGTCTTGGGTATCTATGGTTTGATTATTGCTGT 238
Query 338 TATCATCAGTACCGGGATTAACCCCAAGGCTAAATCCTACTACCTCTTCGACGGATATGC 397
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 239 TATCATCAGTACCGGGATTAACCCCAAGGCTAAATCTTACTACCTCTTCGATGGATATGC 298
Query 398 TCATCTCTCTTCTGGTCTTGCTTGTGGGCTAGCTGGTCTTTCAGCTGGAATGGCCATAGG 457
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 299 CCATCTCTCTTCTGGTCTTGCTTGTGGGCTTGCTGGTCTTTCAGCTGGAATGGCCATTGG 358
Query 458 TATCGTTGGCGATGCTGGTGTCAGGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTAT 517
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TATAGTTGGTGATGCTGGTGTCAGGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTAT 418
Query 518 GATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCAT 577
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 419 GATTCTTATCCTCATTTTCGCTGAAGCTCTGGCTCTATACGGTCTCATCGTTGGGATCAT 478
Query 578 TTTGTCCTCCCGAGCTGGTCAGTCCAGAGCCGAATGAGAAAAGAGTGCGGTTCTTGAAGT 637
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 479 TTTGTCCTCCCGAGCTGGTCAGTCCAGAGCCGAATGAGAAAAGAATGCGGTTCTTAAAGT 538
Query 638 CCGCATGA 645
| ||||||
Sbjct 539 CTGCATGA 546
> Ahg888595 jgi|Araly1|888595|Al_scaffold_0007_581
Length=495
Score = 527 bits (285), Expect = 7e-149
Identities = 429/499 (86%), Gaps = 8/499 (2%)
Strand=Plus/Plus
Query 120 ATGTCTACCTTCAGTGGCGATGAGACCGCTCCTTTCTTCGGCTTCCTTGGCGCTGCCGCT 179
|||||||| ||||| |||||||| || ||||| |||||||||||||| ||||| || ||
Sbjct 1 ATGTCTACGTTCAGCGGCGATGAAACAGCTCCCTTCTTCGGCTTCCTCGGCGCCGCAGCC 60
Query 180 GCGCTCGTCTTCTCATGTATGGGAGCTGCGTACGGGACAGCAAAGAGTGGTGTGGGAGTG 239
|| ||||||||||| |||||||||||||| || || || |||||||||||||| || |||
Sbjct 61 GCACTCGTCTTCTCCTGTATGGGAGCTGCTTATGGAACCGCAAAGAGTGGTGTTGGTGTG 120
Query 240 GCATCTATGGGTGTGATGAGGCCGGAGTTGGTGATGAAGTCTATTGTCCCAGTTGTTATG 299
|| |||||||| || |||||||| |||||||| ||||| ||||||||||| |||||||||
Sbjct 121 GCTTCTATGGGAGTTATGAGGCCTGAGTTGGTCATGAAATCTATTGTCCCTGTTGTTATG 180
Query 300 GCTGGTGTGTTGGGTATCTATGGTTTGATTATTGCTGTTATCATCAGTACCGGGATTAAC 359
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 181 GCTGGTGTTTTGGGTATCTATGGATTGATCATTGCTGTTATCATCAGTACCGGGATTAAC 240
Query 360 CCCAAGGCTAAATCCTACTACCTCTTCGACGGATATGCTCATCTCTCTTCTGGTCTTGCT 419
||||||||||| || ||||||||||| || ||||| || ||||| || ||||||||||||
Sbjct 241 CCCAAGGCTAAGTCTTACTACCTCTTTGATGGATACGCACATCTTTCGTCTGGTCTTGCT 300
Query 420 TGTGGGCTAGCTGGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTC 479
||||| || ||||||||||||||||| |||||||| || || || || ||||| ||||||
Sbjct 301 TGTGGTCTTGCTGGTCTTTCAGCTGGGATGGCCATTGGGATTGTGGGTGATGCCGGTGTC 360
Query 480 AGGGCCAATGCTCAACAGCCAAAGCT-TTTCGTTGGTATGATTCTTATCCTCAT-TTTCG 537
||||| |||||||| ||||| ||||| ||| || || |||||||||||||| || ||| |
Sbjct 361 AGGGCAAATGCTCAGCAGCCTAAGCTCTTT-GTCGGGATGATTCTTATCCTTATCTTT-G 418
Query 538 CTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGA-TCATT-TTGTCCTCCCGAGCTGG 595
| ||||| || ||||| ||||| || || || |||| |||| || ||||| ||||||||
Sbjct 419 CAGAAGCGCTCGCTCTCTACGGGCTTATTGT-GGGAATCATCCTT-TCCTCACGAGCTGG 476
Query 596 TCAGTCCAGAGCCGAATGA 614
||||| ||||| ||||||
Sbjct 477 CCAGTCTAGAGCGGAATGA 495
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38237285751
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5