BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38930.2
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490659 jgi|Araly1|490659|fgenesh2_kg.7__92__AT4G38930.2 1531 0.0
Ahg480987 jgi|Araly1|480987|fgenesh2_kg.4__47__AT2G21270.1 734 0.0
> Ahg490659 jgi|Araly1|490659|fgenesh2_kg.7__92__AT4G38930.2
Length=1022
Score = 1531 bits (829), Expect = 0.0
Identities = 965/1030 (94%), Gaps = 11/1030 (1%)
Strand=Plus/Plus
Query 16 GGAATCACGCGACCAATTGATTCTTCTTCTCACAAGCAGTTGGCGTT-AACTCTTGTTTA 74
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 1 GGAATCACGCGACCAATTGATTCTTCTTCTCACAAACAGTTGGCGTTAAACTC-AATTTA 59
Query 75 TCTACCAGTTG-AAAGATGTTTTACGATGGATACGCTTATCATGGAACTACCTTTGAGCA 133
||||||||||| ||| |||||||||||||||||||| |||||| ||||||||||||||||
Sbjct 60 TCTACCAGTTGAAAATATGTTTTACGATGGATACGCGTATCATAGAACTACCTTTGAGCA 119
Query 134 GACTTACCGGTGTTATCCCTCATCCTTTATTGATAAGCCTCAAATTGAAAGTGGTGACAA 193
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 120 GACTTACCGGTGTTATCCCTCAAGCTTTATTGATAAGCCTCAGATTGAAAGTGGTGGCAA 179
Query 194 GATTATAATGCCACCATCAGCCCTTGATCGTCTAGCTTCTTTGCAGATTGATTATCCAAT 253
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||
Sbjct 180 GATTATAATGCCACCATCAGCCCTTGATCGTCTAGCCTCTTTGCATATCGATTATCCGAT 239
Query 254 GCTCTTTGAACTTCGTAATGCTTCAACAGATAGTTTTTCTCACTGCGGAGTCCTTGAGTT 313
||| ||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 240 GCTGTTTGAGCTTCGTAATGCTTCAACGGATAGTGTTTCTCACTGCGGAGTCCTTGAGTT 299
Query 314 CATCGCAGAAGAAGGCGTGATTTACATTCCCTACTGGATGATGCAGAATTTGCTGTTGCA 373
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 300 CATCGCAGAAGAAGGCGTGATTTACATGCCCTACTGGATGATGCAGAACTTGCTGTTGCA 359
Query 374 AGAAGGAGACATGGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACT 433
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 360 AGAAGGAGACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTATGTGAAACT 419
Query 434 GCAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTGGAGACCGC 493
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 ACAACCCCACACAACAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTAGAGACCGC 479
Query 494 ATTGAGGAACTATTCATGTCTAACGGTCGGAGATAGCATTATGGTCCCATACAACAATAA 553
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 ATTGAGGAACTATTCATGTCTAACTGTCGGAGATAGCATTATGGTCCCATACAACAATAA 539
Query 554 GAAATACTTCATAGACATAGTGGAGGCAAAGCCTTCTAATGGTATTAGCATCATTGAAAC 613
||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 540 GAAATACTTCATAGATATACTGGAGGCAAAGCCTTCTAATGGTATCAGCATCATTGAAAC 599
Query 614 TGATTGCGAGGTTGATTTCGCACCTCCCCTTGATTACAAGGAACCCGAACGACCTGTAGC 673
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 600 TGATTGTGAGGTTGATTTCGCTCCTCCCCTTGATTACAAGGAACCCGAACGACCTGTAGT 659
Query 674 ACCTGCTCCAGCCAAAGGTGAAGCAAAAGCTAAGGAGGTTGATGTGGCTGAAGCAGAACC 733
||||||| |||| |||||| ||||||||||||| ||||||| ||||||||||||||||||
Sbjct 660 ACCTGCTTCAGCTAAAGGTCAAGCAAAAGCTAATGAGGTTGCTGTGGCTGAAGCAGAACC 719
Query 734 AAAGTTTAACCCTTTCACGGGTTCGGGAAGACGTTTGGATGGACGACCTTTATCCTATGA 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AAAGTTTAACCCTTTCACGGGTTCGGGAAGACGTTTGGATGGACGACCTTTATCCTATGA 779
Query 794 ACCGCAACCTGGTGCTGCTAACAGTAACGGCCAATCACATCCTGTTGCAAGTAGTAGTAG 853
||||||||||| ||||||||||||||||||||| ||||| | | | | || | |||||
Sbjct 780 ACCGCAACCTGTTGCTGCTAACAGTAACGGCCAGTCACA-C-TCT--CTAGCA--AGTAG 833
Query 854 TAGTGGGTCAGAGAAGGCTACGCAACAAAATCGAGGGAAACTTGTGTTCGGTTCAAATGT 913
|||||||||||||||||||| ||||||| || ||||||||||||||| ||||| ||||
Sbjct 834 TAGTGGGTCAGAGAAGGCTAAACAACAAACTCAAGGGAAACTTGTGTTTGGTTCTCATGT 893
Query 914 AGAGCGGTCTACTAAAGAGACAACAAAGGTTGGAGCTGGGAAAGATAGAAAGCAAGAGGA 973
| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AAACCGGGCTACTAAAGAGACAACAAAGGTTGGAGCTGGGAAAGATAGAAAGCAAGAGGA 953
Query 974 AGAGGCTGAGAAGGAAGCCAAGTTCCAA-GCTTTTAGTGGTAAAAAATATTCATTGAGGG 1032
||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||
Sbjct 954 AGAGGCTGAGAAGAAAGACAAGTTC-AACGCTTTTAGTGGTAAAAAATATTCATTGAGGG 1012
Query 1033 GTTGAACCAA 1042
| ||||||||
Sbjct 1013 GCTGAACCAA 1022
> Ahg480987 jgi|Araly1|480987|fgenesh2_kg.4__47__AT2G21270.1
Length=1244
Score = 734 bits (397), Expect = 0.0
Identities = 611/714 (86%), Gaps = 15/714 (2%)
Strand=Plus/Plus
Query 90 ATGTTTTACGATGGATACGC-TTATCATGGAACTACCTTTGAGCAGACTTACCGGTGTTA 148
||||||| |||||||||| | |||||||||||| ||||||||||||| ||| ||||||||
Sbjct 99 ATGTTTTTCGATGGATAC-CATTATCATGGAACAACCTTTGAGCAGAGTTATCGGTGTTA 157
Query 149 TCCCTCATCCTTTATTGATAAGCCTCAAATTGAAAGTGGTGACAAGATTATAATGCCACC 208
||| |||| ||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 158 TCCGGCATCTTTTATCGACAAGCCACAAATTGAAAGTGGTGACAAGATTATAATGCCACC 217
Query 209 ATCAGCCCTTGATCGTCTAGCTTCTTTGCAGATTGATTATCCAATGCTCTTTGAACTTCG 268
||||||||||||||||||||| |||||||| ||||| ||||| ||||| ||||| ||||
Sbjct 218 ATCAGCCCTTGATCGTCTAGCCTCTTTGCATATTGACTATCCGATGCTGTTTGAGGTTCG 277
Query 269 TAATGCTTCAACAGATA-GTTTTTCTCACTGCGGAGTCCTTGAGTTCATCGCAGAAGAAG 327
||||||| || || | || || | ||||| ||||||||||||||||| ||||||||||
Sbjct 278 TAATGCTGGAATTGA-ACGTGTTACGCACTGTGGAGTCCTTGAGTTCATTGCAGAAGAAG 336
Query 328 GCGTGATTTACATTCCCTACTGGATGATGCAGAATTTGCTGTTGCAAGAAGGAGACATGG 387
|| |||||||||| || || ||||||||||| ||| |||||||||||||||||||||| |
Sbjct 337 GCATGATTTACATGCCATATTGGATGATGCAAAATCTGCTGTTGCAAGAAGGAGACATTG 396
Query 388 TGAGAGTTAGAAATGTCACTCTTCCAAAGGGAACCTACGTGAAACTGCAACCCCACACAA 447
||||||||||||||||||||||||| |||||||| ||||| ||| | || ||||||||||
Sbjct 397 TGAGAGTTAGAAATGTCACTCTTCCTAAGGGAACTTACGTTAAATTACAGCCCCACACAA 456
Query 448 CAGACTTTCTCGATATAGCTAACCCGAAAGCCATCTTGGAGACCGCATTGAGGAACTATT 507
||||||| || |||||| | ||||||||||||||||||||||| || ||||| || ||||
Sbjct 457 CAGACTTCCTGGATATATCCAACCCGAAAGCCATCTTGGAGACTGCTTTGAGAAATTATT 516
Query 508 CATGTCTAACGG-TCGGAGATAGCATTATGGTCCCATACAACAATAAGAAATACTTCATA 566
|||| || || | || |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 517 CATGCCTTACCACTGGG-GATAGCATTATGGTTCCATACAACAATAAGAAGTACTTCATA 575
Query 567 GACATAGTGGAGGCAAAGCCTTCTAATGGTATTAGCATCATTGAAACTGATTGCGAGGTT 626
|| ||||| || |||||||| |||| | || |||||||| ||||| || || || |||
Sbjct 576 GATATAGTTGAAACAAAGCCTGCTAACGCAATCAGCATCATCGAAACAGACTGTGAAGTT 635
Query 627 GATTTCGCACCTCCCCTTGATTACAAGGAACCCGAACGACCTG-TAGCACCTGCTCCAGC 685
||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||
Sbjct 636 GATTTCGCACCTCCCCTTGATTACAAGGAGCCTGAACGTCCCACT-GCACCTGCTGCAGC 694
Query 686 CAAAGGTGAAGCAAAAGCTAAGGAGGTTGATGTGGCTGAAGCAGAACCAAAGTTTAACCC 745
|| ||| |||||||||| ||||||||| || | ||||| | ||||||||||| |||||
Sbjct 695 TAAGGGTCCAGCAAAAGCTGAGGAGGTTG-TG-G-CTGAACCTGAACCAAAGTTCAACCC 751
Query 746 TTTCACGGGTTCGGGAAGACGTTTGGATGG-ACGACCT-TTATCCTATGAACCG 797
||||||||| || |||||||| || ||||| | ||||| || ||||||| |||
Sbjct 752 TTTCACGGGATCTGGAAGACGGTTAGATGGGA-GACCTCTTG-CCTATGAGCCG 803
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44680058724
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5