BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G38940.1 Length=1428 Score E Sequences producing significant alignments: (Bits) Value Ahg490661 jgi|Araly1|490661|fgenesh2_kg.7__94__AT4G38940.1 1855 0.0 > Ahg490661 jgi|Araly1|490661|fgenesh2_kg.7__94__AT4G38940.1 Length=1360 Score = 1855 bits (1004), Expect = 0.0 Identities = 1241/1350 (92%), Gaps = 37/1350 (3%) Strand=Plus/Plus Query 95 TTCATTTCCTTGAAAACGGTTACAGAATTAGGGTTTTGTTTCTTCTCTCTCGCCGATTGA 154 ||||||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||| Sbjct 30 TTCATTTCCTTCAAAACGGCTACAGAATTA-GGTTTTGTTTCTTCTCTCTCGTCGATTG- 87 Query 155 TC-TTGAAATGTCTTCCCCAATTATAATTAGGGCACCGAAGAAGCAACCGCCGGAGCCGC 213 | | |||||||||| ||||| || |||||||||| ||||||||||||||||||||||| Sbjct 88 -CGTGGAAATGTCTT-CCCAA--ATTATTAGGGCACAGAAGAAGCAACCGCCGGAGCCGC 143 Query 214 CATGTCTGATTTCGTTACTCCCCGAAGAAATCGTCGTCGATATCGTAGCCCGTGTCCCTA 273 | |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 144 CGTGTCTGATTTCGTTACTCCCTGATGAAATCGTCGTCGATATCGTAGCCCGTGTCCCTA 203 Query 274 GATGCTATTACCCTACTCTCTCCCAAGTTTCAAGGCGTTTCCGATCACTCGTCGCTTCTC 333 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 204 GATGCTATTACCCTACTCTCTCCCAAGTTTCAAGGCGTTTCCGATCACTCGTCGCGTCTC 263 Query 334 CGGAGATTTACAAGAGACGATCCTTCTTCGGATGCACAGAACAATGTCTCTACATCGCAA 393 ||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 264 CGGAGCTTTACGCCAGACGATCCTTCTTCGGATGCACAGAGCAATGTCTCTACGTCGCAA 323 Query 394 TCTCCAAAGATCAAACCTCTGATATCCATTGGTTTACTCTGTGCCGGAAACCTAACGGAC 453 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 324 TCTCCAAAGATCAAACCTCTGATATCCATTGGTTTACTCTTTGCCGGAAACCTAACGGCC 383 Query 454 AACAATTCTCCGGCACCACCGCCTCTGATCATCGCCTGGTACATATCCCCACTCTCCCTC 513 ||||||||||||||||| ||||||||||||||| |||| ||||||||| ||||||||| Sbjct 384 AACAATTCTCCGGCACC---GCCTCTGATCATCGCTTGGTCCATATCCCCTCTCTCCCTC 440 Query 514 CTATGCCTATGCATGGAAGCTATGTTGGCATTGGTTCGAACATCTTTGTGATGGGTGGAT 573 |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 441 CTATGCCTATACAAGGAAGCTATGTTGGCATTGGTTCGAACATCTTTGTGATGGGTGGAT 500 Query 574 TTTGCAATTGGAAGATCACATCGAGTGTTTCGCTCATCGATTGTCGAACTCACACTGCTC 633 |||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| Sbjct 501 TTTGCAATTGGAAGATCACACCGAGTGTTTCGCTCATCGATTGTCTAACTCACACGGCTC 560 Query 634 AGACTCTCCCTAACATGCCCAAGGCCGTTGCT-TTTCCCGTCACAGAGCTCATTGATCGG 692 ||||||||||| ||||||| |||||||||||| |||| ||||||||||||||||||||| Sbjct 561 AGACTCTCCCTGACATGCCTAAGGCCGTTGCTATTTCG-GTCACAGAGCTCATTGATCGG 619 Query 693 AAGATTTATGTAATCGGAGGATCAGATACGCTCTCGCCGATGAAATCTCCGTCAAGAATT 752 ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| | Sbjct 620 AAGATTTATGTAATCGGAGGATCAGATACGCTCTCGCCGTTGAAATCGCCGTCAAGAAGT 679 Query 753 ATGATGGTGTATGATACAGATACCGAAATGTGGCAACTTCGGGCGAGGCCAGATTGGGAG 812 ||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| Sbjct 680 ATGATGGTGTATGATACTGATACCGAAATGTGGGAACTTCGGACGAGGCCAGATTGGGAG 739 Query 813 GCAGGGAAAAAATGGTTTAGCAGTGTGGTTATAGGAGGTAAGATTTACATGAGGACTTAT 872 |||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 740 GCAGGGAAGAGATGGTTTAGCAGTGTGGTAATAGGAGGTAAGATTTACATGAGGACTTAT 799 Query 873 CACAATAGCTTTGTTTGCGATCCGAATGATACA-AGTTGCGATAGAGATGAGGTTTTGCA 931 ||||||||||||||| |||||||| ||| | | || |||| |||||| |||||| |||| Sbjct 800 TACAATAGCTTTGTTTACGATCCGATTGA-AGATAGCTGCGTTAGAGACGAGGTTCTGCA 858 Query 932 TTCTAAGGAGTGGTGGAGTGCGTGTGTGATAGATGATGTCTTGTATTACTATGATGTTCG 991 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| Sbjct 859 TTCTAAGGAGTGGTGGAGTTCGTGTGTGATAGATGATGTGTTGTATTACTATGATGTTCG 918 Query 992 TGAGAATTGTTTGAGAGCTTATGATCCAAAGCAGAGAGCTTGGGGAGTCGTTAAAGGTTT 1051 || |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 919 TGGGAATTGTTTGAGAGCTTATGATCCAAAGCAGAGATCTTGGGGAGTGGTTAAAGGTTT 978 Query 1052 TGAAGGATTGTTGCCTGTGGCTTGTAAGTGGTCCAAAACTGTGAGTTACACCGGTGGGAA 1111 |||||| |||||||||| ||||||||||||||| ||||||||||||| |||||||||||| Sbjct 979 TGAAGGGTTGTTGCCTGAGGCTTGTAAGTGGTCGAAAACTGTGAGTTGCACCGGTGGGAA 1038 Query 1112 ATTGGTTCTGTTCTTGCAGAAAACAGAGAAAACAGAGATTTGGTGTGCGGAAATCGCAGT 1171 ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| Sbjct 1039 TTTGGTTCTGTTCTTGCAGAAAACAGAGGAAACGGAGATTTGGTGTGCGGAAATCGCAGT 1098 Query 1172 GGAAAGACGCGAGGGTGGAGAGATTTGGGGTAAAGTGGAGTGGTGTAATGTTGTGCTTAG 1231 ||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 1099 GGAAAGACGTGAAGGTGGAGAGATTTGGGGTAAAGTGGAGTGGTGTAGTGTTGTGCTTGG 1158 Query 1232 TGGGAATTTTCACATAATGGATTGTGTAGCTGTTGTGCTCTGATCTTGTGTTGTAATAGA 1291 ||||||||||||||| ||||||||||||||||||| |||||||||||||| || |||||| Sbjct 1159 TGGGAATTTTCACATTATGGATTGTGTAGCTGTTGAGCTCTGATCTTGTGATGAAATAGA 1218 Query 1292 CTT--GT-GTCCCCTGCTTGTTCTTGTGTGTTT--TA-CTAGCTTATGAATGT--T---- 1339 ||| || |||||||| || ||||||||||| || ||||||||||||||| | Sbjct 1219 CTTTTGTTGTCCCCTG-TT---CTTGTGTGTTTACTAGCTAGCTTATGAATGTGCTTTAA 1274 Query 1340 --CTTCCCTGGAATCTTCTTTTTATTAGCGTATGTTTGTATGGTAT-ACTGTTGTTGTGT 1396 |||||||| | |||||| |||||||||||| ||||||||||| | | ||||||| | | Sbjct 1275 AACTTCCCTGTATTCTTCTGTTTATTAGCGTAAGTTTGTATGGTGTGA-TGTTGTT-T-T 1331 Query 1397 TTGGTGGGGGAAATCTTACTTACATTTGTT 1426 | |||||||| ||||||||||||||||||| Sbjct 1332 T-GGTGGGGGCAATCTTACTTACATTTGTT 1360 Score = 58.4 bits (31), Expect = 1e-07 Identities = 31/31 (100%), Gaps = 0/31 (0%) Strand=Plus/Plus Query 19 GAAGGATCTCAGGAGTTTCTGATTTCTCTTT 49 ||||||||||||||||||||||||||||||| Sbjct 1 GAAGGATCTCAGGAGTTTCTGATTTCTCTTT 31 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53402523490 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5