BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38940.1
Length=1428
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490661 jgi|Araly1|490661|fgenesh2_kg.7__94__AT4G38940.1 1855 0.0
> Ahg490661 jgi|Araly1|490661|fgenesh2_kg.7__94__AT4G38940.1
Length=1360
Score = 1855 bits (1004), Expect = 0.0
Identities = 1241/1350 (92%), Gaps = 37/1350 (3%)
Strand=Plus/Plus
Query 95 TTCATTTCCTTGAAAACGGTTACAGAATTAGGGTTTTGTTTCTTCTCTCTCGCCGATTGA 154
||||||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||
Sbjct 30 TTCATTTCCTTCAAAACGGCTACAGAATTA-GGTTTTGTTTCTTCTCTCTCGTCGATTG- 87
Query 155 TC-TTGAAATGTCTTCCCCAATTATAATTAGGGCACCGAAGAAGCAACCGCCGGAGCCGC 213
| | |||||||||| ||||| || |||||||||| |||||||||||||||||||||||
Sbjct 88 -CGTGGAAATGTCTT-CCCAA--ATTATTAGGGCACAGAAGAAGCAACCGCCGGAGCCGC 143
Query 214 CATGTCTGATTTCGTTACTCCCCGAAGAAATCGTCGTCGATATCGTAGCCCGTGTCCCTA 273
| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 144 CGTGTCTGATTTCGTTACTCCCTGATGAAATCGTCGTCGATATCGTAGCCCGTGTCCCTA 203
Query 274 GATGCTATTACCCTACTCTCTCCCAAGTTTCAAGGCGTTTCCGATCACTCGTCGCTTCTC 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 204 GATGCTATTACCCTACTCTCTCCCAAGTTTCAAGGCGTTTCCGATCACTCGTCGCGTCTC 263
Query 334 CGGAGATTTACAAGAGACGATCCTTCTTCGGATGCACAGAACAATGTCTCTACATCGCAA 393
||||| ||||| |||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 264 CGGAGCTTTACGCCAGACGATCCTTCTTCGGATGCACAGAGCAATGTCTCTACGTCGCAA 323
Query 394 TCTCCAAAGATCAAACCTCTGATATCCATTGGTTTACTCTGTGCCGGAAACCTAACGGAC 453
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 324 TCTCCAAAGATCAAACCTCTGATATCCATTGGTTTACTCTTTGCCGGAAACCTAACGGCC 383
Query 454 AACAATTCTCCGGCACCACCGCCTCTGATCATCGCCTGGTACATATCCCCACTCTCCCTC 513
||||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||||
Sbjct 384 AACAATTCTCCGGCACC---GCCTCTGATCATCGCTTGGTCCATATCCCCTCTCTCCCTC 440
Query 514 CTATGCCTATGCATGGAAGCTATGTTGGCATTGGTTCGAACATCTTTGTGATGGGTGGAT 573
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 CTATGCCTATACAAGGAAGCTATGTTGGCATTGGTTCGAACATCTTTGTGATGGGTGGAT 500
Query 574 TTTGCAATTGGAAGATCACATCGAGTGTTTCGCTCATCGATTGTCGAACTCACACTGCTC 633
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||
Sbjct 501 TTTGCAATTGGAAGATCACACCGAGTGTTTCGCTCATCGATTGTCTAACTCACACGGCTC 560
Query 634 AGACTCTCCCTAACATGCCCAAGGCCGTTGCT-TTTCCCGTCACAGAGCTCATTGATCGG 692
||||||||||| ||||||| |||||||||||| |||| |||||||||||||||||||||
Sbjct 561 AGACTCTCCCTGACATGCCTAAGGCCGTTGCTATTTCG-GTCACAGAGCTCATTGATCGG 619
Query 693 AAGATTTATGTAATCGGAGGATCAGATACGCTCTCGCCGATGAAATCTCCGTCAAGAATT 752
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
Sbjct 620 AAGATTTATGTAATCGGAGGATCAGATACGCTCTCGCCGTTGAAATCGCCGTCAAGAAGT 679
Query 753 ATGATGGTGTATGATACAGATACCGAAATGTGGCAACTTCGGGCGAGGCCAGATTGGGAG 812
||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||
Sbjct 680 ATGATGGTGTATGATACTGATACCGAAATGTGGGAACTTCGGACGAGGCCAGATTGGGAG 739
Query 813 GCAGGGAAAAAATGGTTTAGCAGTGTGGTTATAGGAGGTAAGATTTACATGAGGACTTAT 872
|||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 740 GCAGGGAAGAGATGGTTTAGCAGTGTGGTAATAGGAGGTAAGATTTACATGAGGACTTAT 799
Query 873 CACAATAGCTTTGTTTGCGATCCGAATGATACA-AGTTGCGATAGAGATGAGGTTTTGCA 931
||||||||||||||| |||||||| ||| | | || |||| |||||| |||||| ||||
Sbjct 800 TACAATAGCTTTGTTTACGATCCGATTGA-AGATAGCTGCGTTAGAGACGAGGTTCTGCA 858
Query 932 TTCTAAGGAGTGGTGGAGTGCGTGTGTGATAGATGATGTCTTGTATTACTATGATGTTCG 991
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 859 TTCTAAGGAGTGGTGGAGTTCGTGTGTGATAGATGATGTGTTGTATTACTATGATGTTCG 918
Query 992 TGAGAATTGTTTGAGAGCTTATGATCCAAAGCAGAGAGCTTGGGGAGTCGTTAAAGGTTT 1051
|| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 919 TGGGAATTGTTTGAGAGCTTATGATCCAAAGCAGAGATCTTGGGGAGTGGTTAAAGGTTT 978
Query 1052 TGAAGGATTGTTGCCTGTGGCTTGTAAGTGGTCCAAAACTGTGAGTTACACCGGTGGGAA 1111
|||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 979 TGAAGGGTTGTTGCCTGAGGCTTGTAAGTGGTCGAAAACTGTGAGTTGCACCGGTGGGAA 1038
Query 1112 ATTGGTTCTGTTCTTGCAGAAAACAGAGAAAACAGAGATTTGGTGTGCGGAAATCGCAGT 1171
||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1039 TTTGGTTCTGTTCTTGCAGAAAACAGAGGAAACGGAGATTTGGTGTGCGGAAATCGCAGT 1098
Query 1172 GGAAAGACGCGAGGGTGGAGAGATTTGGGGTAAAGTGGAGTGGTGTAATGTTGTGCTTAG 1231
||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1099 GGAAAGACGTGAAGGTGGAGAGATTTGGGGTAAAGTGGAGTGGTGTAGTGTTGTGCTTGG 1158
Query 1232 TGGGAATTTTCACATAATGGATTGTGTAGCTGTTGTGCTCTGATCTTGTGTTGTAATAGA 1291
||||||||||||||| ||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 1159 TGGGAATTTTCACATTATGGATTGTGTAGCTGTTGAGCTCTGATCTTGTGATGAAATAGA 1218
Query 1292 CTT--GT-GTCCCCTGCTTGTTCTTGTGTGTTT--TA-CTAGCTTATGAATGT--T---- 1339
||| || |||||||| || ||||||||||| || ||||||||||||||| |
Sbjct 1219 CTTTTGTTGTCCCCTG-TT---CTTGTGTGTTTACTAGCTAGCTTATGAATGTGCTTTAA 1274
Query 1340 --CTTCCCTGGAATCTTCTTTTTATTAGCGTATGTTTGTATGGTAT-ACTGTTGTTGTGT 1396
|||||||| | |||||| |||||||||||| ||||||||||| | | ||||||| | |
Sbjct 1275 AACTTCCCTGTATTCTTCTGTTTATTAGCGTAAGTTTGTATGGTGTGA-TGTTGTT-T-T 1331
Query 1397 TTGGTGGGGGAAATCTTACTTACATTTGTT 1426
| |||||||| |||||||||||||||||||
Sbjct 1332 T-GGTGGGGGCAATCTTACTTACATTTGTT 1360
Score = 58.4 bits (31), Expect = 1e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 19 GAAGGATCTCAGGAGTTTCTGATTTCTCTTT 49
|||||||||||||||||||||||||||||||
Sbjct 1 GAAGGATCTCAGGAGTTTCTGATTTCTCTTT 31
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53402523490
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5