BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38950.1
Length=3303
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490663 jgi|Araly1|490663|fgenesh2_kg.7__96__AT4G38950.2 4577 0.0
Ahg480993 jgi|Araly1|480993|fgenesh2_kg.4__53__AT2G21300.1 1487 0.0
> Ahg490663 jgi|Araly1|490663|fgenesh2_kg.7__96__AT4G38950.2
Length=2907
Score = 4577 bits (2478), Expect = 0.0
Identities = 2763/2897 (95%), Gaps = 34/2897 (1%)
Strand=Plus/Plus
Query 386 GTAGTGGATGTTTGCTTGCAGTTTAGAGCTTCGGAGTGCGAAGAGTGAGACACAAGAGGA 445
|||||||||| | ||||||||||||||||||||||||| |||||||||| | |||
Sbjct 32 GTAGTGGATG--T--TTGCAGTTTAGAGCTTCGGAGTGCGTAGAGTGAGAC-C---AGGC 83
Query 446 TTCTTTCTGGAACCGCATTATTCCCTTTAGAGGAGGAAGAAGAAGACAACT--CACTC-A 502
||||| |||| | | || ||| |||| || |||||| | ||||||||| | ||| |
Sbjct 84 TTCTTACTGG-AGC-CA-CATT-GCTTT-GA-AAGGAAG-A-AAGACAACTAACTCTCAA 135
Query 503 --C-A--AGGAAAACAAAGGTTCCTCTGGTTACTCTGAAATATTCAAACCAATGGTGAGC 557
| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 136 GGCAAGCAGGAAAACAAAGGTTCCTCTGGTTACTCTGAATTATTCAAACCAATGGTGAGC 195
Query 558 AATTGGTAGCACTTGCTAAAGAAGATGGAGAAGACACAGATGCCTGTAGCCCGAGAAGAG 617
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 196 AATTGGTAGCACTTGCTAAAGAAGATGGAGAAGACACATTTGCCTGTAGCCCGACAAGAG 255
Query 618 AAGATACTGGTTCTCGTGAGATTGAGGCCTCTAAACCAGAAAGAGATTGCCGCTAATGAA 677
|||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||| |||
Sbjct 256 AAGATACTGGTTCTGGTGAGATTGAGACCTCTAAATGAGAAAGAGATTGCGGCTAACGAA 315
Query 678 GCTGCGGATTGGGAATGTATCAATGATACCACCATATTGTACAGAAACACATTGCGCGAA 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 GCTGCGGATTGGGAATGTATCAATGATACCACCATATTGTACAGAAACACATTGCGCGAA 375
Query 738 GGCTCGAACTTTCCTTCTGCATATTCATTTGATAAAGTCTACCGAGGTGAATGTCCCACC 797
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 GGCTCAAACTTTCCTTCTGCATATTCATTTGATAAAGTCTACCGAGGTGAATGTCCCACC 435
Query 798 AGACAAGTTTACGAGGATGGAACCAAGGAAATCGCTCTGTCTGTTGTCAAAGGAATCAAT 857
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 436 AGACAAGTTTACGAGGATGGAACCAAGGAAATCGCTCTGTCGGTTGTCAAAGGAATCAAT 495
Query 858 TGTAGTATTTTCGCATATGGCCAGACGAGTAGTGGAAAGACATACACCATGACTGGTATT 917
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 496 TGTAGTATTTTCGCATATGGCCAGACGAGTAGCGGAAAGACATACACCATGACTGGTATT 555
Query 918 ACTGAGTTTGCTGTGGCTGATATATTTGACTATATATTTCAGCATGAAGAAAGGGCGTTT 977
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 556 ACTGAGTTTGCTGTGGCTGACATATTTGACTATATATTTCAGCATGAAGAAAGGGCATTT 615
Query 978 TCCGTGAAGTTTTCAGCTATAGAGATCTACAATGAGGCCATACGAGATCTGCTTAGCTCG 1037
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 TCAGTGAAGTTTTCAGCTATAGAGATCTACAATGAGGCCATACGAGATCTGCTTAGCTCG 675
Query 1038 GATGGTACATCACTGAGGCTACGAGACGATCCTGAGAAAGGGACAGTTGTTGAAAAAGCC 1097
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 676 GATGGTACATCGCTGAGGCTACGAGATGATCCTGAGAAAGGGACAGTTGTTGAAAAAGCC 735
Query 1098 ACAGAGGAAACTCTGCGAGACTGGAACCATCTGAAGGAACTTCTATCTATTTGTGAAGCA 1157
|||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 736 ACAGAGGAAACTTTGCGAGACTGGAACCACCTGAAGGAGCTTCTATCTATTTGTGAAGCA 795
Query 1158 CAGCGTAAGATAGGTGAAACCTCATTGAATGAGAGAAGTTCCAGATCTCATCAAATGATC 1217
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CAGCGTAAGATTGGTGAAACCTCATTGAATGAGAGAAGTTCCAGATCTCATCAAATGATC 855
Query 1218 AGACTGACAGTTGAAAGCTCTGCTCGTGAGTTCTTAGGCAAAGAAAACTCCACCACCCTC 1277
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 856 AGACTGACAGTTGAAAGCTCTGCTCGTGAGTTCCTAGGCAAAGAAAACTCCACCACCCTC 915
Query 1278 ATGGCGAGTGTGAATTTCATCGATCTAGCAGGAAGCGAGCGTGCTTCACAAGCTATGTCA 1337
||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||
Sbjct 916 ATGGCGAGTGTGAATTTCATCGATCTAGCGGGAAGCGAGCGTGCATCACAGGCGATGTCA 975
Query 1338 GCTGGTACAAGACTCAAGGAAGGCTGCCATATCAATAGAAGTTTGCTGACTCTTGGAACA 1397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GCTGGTACAAGACTCAAGGAAGGCTGCCATATCAATAGAAGTTTGCTGACTCTTGGAACA 1035
Query 1398 GTGATCCGTAAACTTAGTAAGGGAAGACAAGGGCACATCAACTTTAGAGACTCGAAGCTC 1457
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1036 GTGATCCGTAAACTTAGTAAGGGAAGACAAGGGCACATCAACTTTAGAGACTCCAAGCTC 1095
Query 1458 ACACGAATTCTACAGCCATGCTTGGGGGGTAATGCAAGAACAGCTATCATCTGCACTCTG 1517
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 ACCCGAATTCTACAGCCATGCTTGGGGGGTAATGCAAGAACAGCTATCATCTGCACTCTG 1155
Query 1518 AGCCCAGCAAGGAGTCATGTAGAGCTAACGAAGAACACTCTCTTGTTTGCGTGTTGTGCA 1577
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1156 AGCCCAGCAAGGAGTCATGTAGAGCTAACGAAGAACACTCTCTTGTTTGCGTGCTGTGCA 1215
Query 1578 AAGGAAGTCACCACAAAGGCGCGGATCAATGTTGTTATGTCAGACAAGGCTCTGCTAAAG 1637
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1216 AAGGAAGTTACCACAAAGGCGCGGATCAATGTTGTTATGTCAGACAAGGCTCTGCTGAAG 1275
Query 1638 CAACTACAGCGTGAGCTTGCGAGGCTCGAGACTGAGCTGAGAAACCCTGCCTCCTCACCT 1697
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1276 CAACTACAGCGTGAGCTTGCGAGGCTTGAGACCGAGCTGAGAAACCCTGCCTCCTCACCT 1335
Query 1698 GCCTCAAACTGTGATTGTGCAATGACGGTGAGGAAGAAAGATCTTCAGATACAAAAGATG 1757
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1336 GCCTCAAACTGTGATTGTGCAATGACGGTGAGGAAGAAAGATCTTCAAATACAAAAGATG 1395
Query 1758 GAAAAGGAGATCGCAGAGTTGAGAAAACAGAGGGATCTTGCTCAATCCCGGCTTGAAGAT 1817
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1396 GAAAAGGAGATCGCTGAGTTGAGAAAACAGAGGGATCTTGCTCAATCCCGGCTTGAAGAT 1455
Query 1818 TTCATGAGAATGATTGAACACAATGTGGCGTCAAAGCCTGGAACTCCACATTTCGGCAAC 1877
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1456 TTCATGAGAATGATTGAACACAATGTGGCGTCAAAGCCTGGAACTCCGCATTTCGGCAAC 1515
Query 1878 CACACAGACAAGTGGGAGGATGGTTCAGTATCGGAGACATCAGGCGTGGTCGATTCAGAC 1937
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1516 CACACAGACAAGTGGGATGATGGTTCAGTATCGGAGACATCTGGCGTGGTCGATTCAGAC 1575
Query 1938 AGAAGGAGTTTTATATCAGATGGAATGTCTACACCGCTGTCAATATCAAGAGCTTATGTT 1997
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1576 AGAAGGAGTTACATATCAGATGGAATGCCTACACCGCTGTCAATATCAAGAGCTTATGTT 1635
Query 1998 CATTCTCACTCTGACGATGATGATCTGGATGAAGACTTGCCTAGGCGTTCGGAAGATCTA 2057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1636 CATTCTCACTCTGACGATGATGATCTGGATGAAGACTTGCCTAGGCGTTCGGAAGATCTA 1695
Query 2058 TCAGAAGAATATTGCAGAGAAGTTCAATGCATTGAGACTGAGGAATCAGTCACAGTCTAT 2117
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 CCAGAAGAATATTGCAGAGAAGTTCAATGCATTGAGACTGAGGAATCAGTCACAGTCTAT 1755
Query 2118 AATAACAAGAAAGACAAGAGAGCAGAACCTGAAAACGTTTTAGGCTGTGGTGAGGATGCT 2177
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1756 AATAACAAGAAAGACAAGAGAGCAGAACCTGAAAACGTTTTAGGCCGTGGTGAGGATGCT 1815
Query 2178 AATGGTGAAACGAGTGTAAGCCAGAACGTCAGGGTGAGAAGTTGGAACCGCAGAGAGACT 2237
||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1816 AATGGTGAACCGAGTGTAGGCCAGAACGTCAGGGTGAGAAGCTGGAACCGCAGAGAGACT 1875
Query 2238 GTGTCAGGCCCGAGCACTCCGCCTGAAAACATAGGGACAGGTTTCCTCGGAAGACCAGAG 2297
||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1876 GTGTCAGGCACGAGCACTCCGCCTGAAAACCTAGGGACAGGCTTCCTCGGAAGACCAGAG 1935
Query 2298 AGTCACAAGATTGCGTTTCCTGATTTAGAGTTCGGTTCTACTGTATCGAGGAATGATTCT 2357
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1936 AGTCATAAGATTGCGTTTCCTGATTTAGAGTTCGGTTCTACTATATCGAGGAATGATTCT 1995
Query 2358 ATGTCTTCTTGCGGGAGCGATTCCACAGGGACTCAGAGCATCAGAACGCCGTTGGGAGAA 2417
||||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||
Sbjct 1996 ATGTCTTCTTGCGGGAGTGATTCTACAGGGGCTCAGAGCATCAGAACGCCGTTAGGAGAA 2055
Query 2418 GAGGGTGGTATTACTAGTATCCGGACTTTCGTTGAAGGGCTTAAAGAGATGGCTAAGCGT 2477
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2056 GAGGGAGGTATTACTAGTATCCGGACTTTCGTTGAAGGGCTTAAAGAGATGGCCAAGCGT 2115
Query 2478 CAAGGCGAGGTCTCAAATGCTGAGGATTCTGGTAAAATGAGGAGGGACATTGGTCTGGA- 2536
|||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |
Sbjct 2116 CAAGGCGAGGTCTCGAATGCCGAGGATTCTGGTAAAATGGGGAGGGACATTGGTCT-AAT 2174
Query 2537 CTCCATGGACAGAGAATTTGAGAGACAGCGGCAAGAGATTCTGGAGCTATGGCAAACTTG 2596
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2175 ATCCATGGACGGAGAATTTGAGAGACAGCGGCAAGAGATTCTGGAGTTATGGCAAACTTG 2234
Query 2597 TAACATCTCTTTGGTGCATAGAACATACTT-TTACTTGCTCTTCAAAGGAGATGAGGCGG 2655
|||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||
Sbjct 2235 TAACATCTCTTTGGTGCATAGAACATACTTCTT-CTTGCTCTTCAAAGGAGATGAAGCGG 2293
Query 2656 ATTCAATCTACATCGGAGTAGAGCTAAGAAGACTTTTGTTTATGAAAGATAGCTTCTCTC 2715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2294 ATTCAATCTACATCGGAGTAGAGCTAAGAAGACTTTTGTTTATGAAAGATAGCTTCTCTC 2353
Query 2716 AGGGAAACCAAGCATTGGAAGGAGGAGAAACCTTAACATTGGCCTCAAGCCGGAAAGAGC 2775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2354 AGGGAAACCAAGCATTGGAAGGAGGAGAAACCTTAACATTGGCCTCAAGCCGGAAAGCGC 2413
Query 2776 TTCACAGGGAGAGAAAGATGCTGAGCAAGCTTGTGGGGAAAAGGTTTTCAGGAGAAGAGA 2835
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2414 TTCATAGGGAGAGAAAGATGCTGAGCAAGCTTGTGGGGAAAAGGTTTTCAGAAGAAGAGA 2473
Query 2836 GGAAAAGAATCTACCACAAGTTTGGGATTGCGATTAACTCCAAACGCAGGCGGTTACAAC 2895
||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 2474 GGAAAAGAATCTATCACAAGTTTGGGATTGCGGTTAACTCCAAACGCAGGCGATTACAAC 2533
Query 2896 TTGTGAATGAGCTCTGGAGCAATCCCAAGGACATGACTCAGGTTATGGAAAGCGCAGATG 2955
||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 2534 TTGTGAACGAGCTCTGGAGCAATCCCAAGGACACGACTCAGGTTGTGGAAAGCGCAGATG 2593
Query 2956 TTGTAGCGAAGCTTGTGAGGTTCGCTGAGCAAGGCAGAGCCATGAAGGAGATGTTTGGTC 3015
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2594 TTGTAGCGAAGCTCGTGAGGTTCGCTGAGCAAGGCAGAGCCATGAAGGAGATGTTTGGTC 2653
Query 3016 TGACCTTCACACCTCCTTCGTTCTTGACAACTCGGAGATCGCATAGTTGGAGAAAAAGCA 3075
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2654 TGACCTTCACACCTCCTTCATTCTTGACTACTCGGAGATCGCATAGTTGGAGAAAAAGCA 2713
Query 3076 TGCCTGCACTTTTCTAACTTCTGTTTGGTCCAATGACATTTTACTTTTGGGTTTCTTGTA 3135
||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 2714 TGCCTACACTTTTCTAACTTCTGTTTGGGCCAATGACATTTTCCTTTTGGGTTTCTTGTA 2773
Query 3136 GCAGAAGCCATGTCTTGTATATCTTCTTGGTGTCATTTCATTTCCT---CTGTCTTTTGA 3192
||||||||||||| ||||||||| |||| |||| |||||| |||| || |||||||
Sbjct 2774 GCAGAAGCCATGTTTTGTATATCGTCTTTATGTCTTTTCATATCCTTTTCTTTCTTTTG- 2832
Query 3193 TTTTTCAAAACAGACAATGTTGTAATTGAAtttttcttttccatcaaattcttttctttt 3252
|||| ||| |||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2833 TTTTG-AAA-CAGACAATGTTGTAATTGAAATTTGCTTTTCCATCAAATTCTTTTCTTTT 2890
Query 3253 tACCCGTAAAAATTGTT 3269
||||| |||||||||||
Sbjct 2891 TACCCATAAAAATTGTT 2907
Score = 63.9 bits (34), Expect = 7e-09
Identities = 34/34 (100%), Gaps = 0/34 (0%)
Strand=Plus/Plus
Query 1 AAGAACAAACAACTACCAAACTTGTAGGCAGTAG 34
||||||||||||||||||||||||||||||||||
Sbjct 2 AAGAACAAACAACTACCAAACTTGTAGGCAGTAG 35
> Ahg480993 jgi|Araly1|480993|fgenesh2_kg.4__53__AT2G21300.1
Length=2889
Score = 1487 bits (805), Expect = 0.0
Identities = 1316/1558 (84%), Gaps = 53/1558 (3%)
Strand=Plus/Plus
Query 572 GCTAAAGAAGATGGAGAAGACACAGATGCCTGTAGCCCGAGAAGAGAAGATACTGGTTCT 631
||| ||||| ||||||||||||||| ||| ||| ||||| |||||||||||| |||||||
Sbjct 263 GCTGAAGAAAATGGAGAAGACACAGGTGCATGTTGCCCGGGAAGAGAAGATATTGGTTCT 322
Query 632 CGTGAGATTGAGGCCTCTAAACCAGAAAGAGA--TTGCCGCTAATGAAGCTGCGGATTGG 689
|||||| |||| ||||| || | ||||||| ||| |||||||||||||||||||||
Sbjct 323 GGTGAGACTGAGACCTCTGAATGACAAAGAGATCTTG--GCTAATGAAGCTGCGGATTGG 380
Query 690 GAATGTATCAATGATACCACCATATTGTACAGAAACACATTGCGCGAAGGCTCGAAC-TT 748
||||| ||||| || |||||| |||||||||||||||| ||||| || ||||| ||| ||
Sbjct 381 GAATGCATCAACGACACCACCGTATTGTACAGAAACACGTTGCGTGAGGGCTC-AACTTT 439
Query 749 TCCTTCTGCATATTCATTTGATAAAGTCTACCGAGGTGAATGTCCC-ACCAGACAAGTTT 807
|||||||||||| |||||||||| ||| |||||||||||||| ||| |||||||||||||
Sbjct 440 TCCTTCTGCATACTCATTTGATAGAGTGTACCGAGGTGAATG-CCCAACCAGACAAGTTT 498
Query 808 ACGAGGATGGAACC-AAGGAAATCGCTCTGTCTGTTGTCAAAGGAATCAATTGTAGTATT 866
|||| ||||| || |||||| | ||||| ||||||||||||||||| |||| |||||||
Sbjct 499 ACGAAGATGG-CCCTAAGGAAGTTGCTCTCTCTGTTGTCAAAGGAATTAATTCTAGTATT 557
Query 867 TTCGCATATGGCCAGACGAGTAGTGGAAAGACATACACCATGACTGGTATTACTGAGTTT 926
||||||||||| |||||||| ||||||||||| || |||||| ||||||| |||||||||
Sbjct 558 TTCGCATATGGTCAGACGAGCAGTGGAAAGACGTATACCATGTCTGGTATAACTGAGTTT 617
Query 927 GCTGTGGCTGATATATTTGACTATATATTTCAGCATGAAGAAAGGGCGTTT-TCCGTGAA 985
||||||||||| |||||||| ||||| ||| |||||||||| ||||| ||| | |||||
Sbjct 618 GCTGTGGCTGACATATTTGATTATATTTTTAAGCATGAAGATAGGGCATTTGT-TGTGAA 676
Query 986 GTTTTCAGCTATAGAGATCTACAATGAGGCCATACGAGATCTGCTTAGCTCGGATGGTAC 1045
||||||||||||||||||||||||||||||||| |||||||| || ||| | ||| ||||
Sbjct 677 GTTTTCAGCTATAGAGATCTACAATGAGGCCATCCGAGATCTTCTCAGCCCAGATAGTAC 736
Query 1046 ATCACTGAGGCTACGAGACGATCCTGAGAAAGGGACAGTTGTTGAAAAAGCCACAGAGGA 1105
| |||||||||||||||| || |||||||||||| | || |||||||||||||||||| |
Sbjct 737 ACCACTGAGGCTACGAGATGACCCTGAGAAAGGGGCCGTCGTTGAAAAAGCCACAGAGAA 796
Query 1106 AACTCTGCGAGACTGGAACCATCTGAAGGAACTTCTATCT-A-TTTGTGAAGCACAGCGT 1163
||| ||| |||||||||||||| ||||||| | | ||||| | ||||||||||||||||
Sbjct 797 AACCCTGAGAGACTGGAACCATTTGAAGGATC-T-TATCTCAGTTTGTGAAGCACAGCGG 854
Query 1164 AAGATAGGTGAAACCTCATTGAATGAGAGAAGTTCCAGATCTCATCAAATGATCAGACTG 1223
||||| |||||||| ||| | |||||||||||||| |||||||||||||| |||| |||
Sbjct 855 AAGATTGGTGAAACTTCACTAAATGAGAGAAGTTCAAGATCTCATCAAATTATCAAACTA 914
Query 1224 ACAGTTGAAAGCTCTGCTCGTGAGTTCTTAGGCAAAGAAAACTCCACCACCCTCATGGCG 1283
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 915 ACAGTTGAAAGCTCTGCTCGTGAGTTCTTAGGCAAAGAAAACTCAACCACTCTCATGGCG 974
Query 1284 AGTGTGAATTTCATCGATCTAGCAGGAAGCGAGCGTGCTTCACAAGC-TATGTCAGCTGG 1342
||||||||||| || ||| | || || ||||||||||| || || || | | ||||||||
Sbjct 975 AGTGTGAATTTTATTGATTTGGCGGGGAGCGAGCGTGCATCGCAGGCCT-TATCAGCTGG 1033
Query 1343 TACAAGACTCAAGGAAGGCTGCCATATCAATAGAAGTTTGCTGACTCTTGGAACAGTGAT 1402
| ||||||| ||||| || || ||||||||| |||| ||| ||||||| ||||| |||||
Sbjct 1034 TGCAAGACTTAAGGAGGGTTGTCATATCAATCGAAGCTTGTTGACTCTAGGAACCGTGAT 1093
Query 1403 CCGTAAACTTAGTAAGGGAAGACAAGGG-CACATCAACTTTAGAGACTCGAAGCTCACAC 1461
|| ||||| || || |||||||| ||| |||||||||| ||||||||| ||||||||||
Sbjct 1094 ACGCAAACTCAGCAACGGAAGACA-GGGACACATCAACTATAGAGACTCCAAGCTCACAC 1152
Query 1462 GAATTCTACAGCCATGCTTGGGGGGTAATGCAAGAACAGCTATCA-TCTGCACTCTGAGC 1520
| ||||| ||||| |||||||| || ||||| ||||| || || | | ||||| |||||
Sbjct 1153 GCATTCTTCAGCCGTGCTTGGGAGGCAATGCTAGAACCGCCAT-AGTTTGCACGCTGAGT 1211
Query 1521 CCAGCAAGGAGTCATGTAGAGCTA-ACGAAGAA-CACTCTCTTGTTTGCGTGTTGTGCAA 1578
||||| ||||||||||| |||| | || | ||| ||||||||||||||| || ||||| |
Sbjct 1212 CCAGCGAGGAGTCATGTGGAGC-AGACTA-GAAACACTCTCTTGTTTGCTTGCTGTGCCA 1269
Query 1579 AGGAAGTCACCAC-AAAGGCGCGGATCAATGTTGTTATGTCAGACAAGGCTCTGCTAAAG 1637
|||||||||| || |||| | | |||||||||||||||||||||||||||| || | |||
Sbjct 1270 AGGAAGTCACAACGAAAG-CACAGATCAATGTTGTTATGTCAGACAAGGCTTTGGTGAAG 1328
Query 1638 CAACTACAGCGTGAGCTTGCGAGGCTCGAGA-CTGAGCTGAGAAACCCTGCCTCCT-CAC 1695
||||||||||||||||| || |||||||||| | |||||||||||||| ||| ||| ||
Sbjct 1329 CAACTACAGCGTGAGCTAGCCAGGCTCGAGAGC-GAGCTGAGAAACCCAGCC-CCTGCAA 1386
Query 1696 CTGCCTCAAACTGTGATTGTGCAATGACGGTGAGGAAGAAAGATCTTCAGATACAAAAGA 1755
| | |||| ||| ||||||| | ||| |||| |||||||||||||||||||||||||
Sbjct 1387 C--C-TCAAGCTGCGATTGTGGGGTTACGCTGAGAAAGAAAGATCTTCAGATACAAAAGA 1443
Query 1756 TGGAAAAGGAGATCGCAGAGTTGAGAAAACAGAGGGATCTTGCTCAATCCCGGCTTGAAG 1815
|||| ||| || | ||||| ||| ||||||| ||||| |||||||||| ||||||||||
Sbjct 1444 TGGAGAAGCAGCTTGCAGAAATGACAAAACAGCGGGATATTGCTCAATCTCGGCTTGAAG 1503
Query 1816 ATTTCATGA-GAATGATTGAACACAATGTGGCGTCAAAGCCTGGAACTCCACATTTCGGC 1874
|||| |||| || || |||||||| ||| | | || ||| ||||||||| |||||| |
Sbjct 1504 ATTTTATGAAGA-TGGTTGAACACGATGAGTCTTCGAAGGTTGGAACTCCGCATTTCCGT 1562
Query 1875 AACCACACAGAC-AAGTGGGAGGATGGTTCAGTATCGGAGACATCAGGCGTGGTCGATTC 1933
|||| || || |||||||||||||||||| | || |||| |||||||||||| ||| |
Sbjct 1563 AACCGTACC-ACCAAGTGGGAGGATGGTTCACTGTCAGAGATATCAGGCGTGGTTGATCC 1621
Query 1934 AGACAGAAGGAGTTTTATATCAGATGGAATGTCTACACCGCTGTCAA-TATCAAGAGCTT 1992
|||||| | ||||| ||||||||||| | || || || ||||| | | ||||||||
Sbjct 1622 AGACAGGACCAGTTTCATATCAGATGGGACCTCAACGCCTCTGTCGACTG-CAAGAGCTC 1680
Query 1993 ATGTTCAT-TCTCACTCTGACGATGATGATCTGGATGAAGAC-T-T-GCCTAGGCGTTC- 2047
||||| | ||||||||||| |||||||||||| || || | | |||||||| |||
Sbjct 1681 ATGTT-AGGTCTCACTCTGA---TGATGATCTGGAGGAGGAAATGTCGCCTAGGCATTCA 1736
Query 2048 GGAAGATCTATCAGAAGAATATTGCAGAGAAGTTCAATGCATTGAGACTG-AGGAATC 2104
||| |||| |||||||||||| |||| ||| || ||||||||||||| || | |||||
Sbjct 1737 GGA-GATCAATCAGAAGAATACTGCAAAGAGGTACAATGCATTGAGA-TGGAAGAATC 1792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124676609148
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5