BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38960.3
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943862 jgi|Araly1|943862|scaffold_700091.1 784 0.0
Ahg932059 jgi|Araly1|932059|scaffold_400047.1 294 1e-78
> Ahg943862 jgi|Araly1|943862|scaffold_700091.1
Length=595
Score = 784 bits (424), Expect = 0.0
Identities = 460/478 (96%), Gaps = 0/478 (0%)
Strand=Plus/Plus
Query 710 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTACGTGTTGGTTTAGCTGAACCAAG 769
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 115 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTTCGTGTTGGTTTAGCCGAACCAAG 174
Query 770 CAATGCCCCATGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTACTGTGAGATAGA 829
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 175 CAATGCCCCGTGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTATTGTGAGATAGA 234
Query 830 CGGTAGTTCTCTTTGTCTGCAATGTGACATGGTAGTACATGTTGGTGGCAAGAGAACACA 889
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 235 CGGTAGCTCTCTTTGTCTGCAATGTGACATGGTCGTACATGTTGGTGGCAAGAGAACACA 294
Query 890 CGGTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGGGATAAGCCTAAAGAAAA 949
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 295 TGGTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGTGATAAGCCTAAAGCAAA 354
Query 950 CAATACGAGGGACAATTTGCAGAACCAAAGAGTCTCTACAAATGGAAATGGTGAAGCCAA 1009
||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 355 CAATATGAGGGACAATTTGCAGAACCAAAGAGTGTCTACAAACGGAAATGGTGAAGCTAA 414
Query 1010 TGGGAAGATTGATGACGAAATGATTGATCTAAATGCTAATCCACAAAGAGTACATGAGCC 1069
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 TGGCAAGATTGATGACGAAATGATTGATCTAAATGCTAATCCACAAAGAGTACATGAGCC 474
Query 1070 ATCATCAAATAACAACGGGATTGATGTAAATAACGAGAACAATCACGAGCCTGCAGGCCT 1129
| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 475 AGCATCAAATAACAACGGGATTGATGTAAATAACGAGAACAATCACGAGGCTCCAGGCAT 534
Query 1130 TGTACCAGTTGGACCCTTTAAACGAGAGTCTGAGAAGTGATAAGGTgagagagagaga 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TGTACCAGTTGGACCCTTTAAACGAGAGTCTGAGAAGTGATAAGGTGAGAGAGAGAGA 592
Score = 187 bits (101), Expect = 2e-46
Identities = 111/116 (96%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 467 CTTATAAGATTGAAAAAGCAAGATGCGGATTTTGTGCGATGCTTGCGAGAACGCAGCCGC 526
||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTTTTAAGATTGAAGAAGAAAGATGCGGATTTTGTGCGATGCTTGCGAGAACGCAGCCGC 60
Query 527 AATCATCTTTTGCGCCGCCGATGAAGCTGCCCTTTGTCGCCCCTGCGATGAAAAAG 582
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 AATCGTCTTTTGCGCCGCCGATGAAGCTGCCCTTTGTCGCTCCTGCGATGAAAAAG 116
> Ahg932059 jgi|Araly1|932059|scaffold_400047.1
Length=551
Score = 294 bits (159), Expect = 1e-78
Identities = 210/235 (89%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 710 AGTTCATATGTGCAACAAGCTAGCTAGTCGGCATGTACGTGTTGGTTTAGCTGAACCAAG 769
|||||| | |||||||||||| |||||||||||| | ||||| || |||||||| || ||
Sbjct 113 AGTTCACAAGTGCAACAAGCTGGCTAGTCGGCATCTTCGTGTAGGCTTAGCTGATCCGAG 172
Query 770 CAATGCCCCATGCTGTGATATATGCGAAAATGCACCTGCCTTCTTTTACTGTGAGATAGA 829
||||| ||| ||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 173 TAATGCGCCAAGCTGTGACATATGCGAAAATGCACCCGCATTCTTTTACTGTGAGATAGA 232
Query 830 CGGTAGTTCTCTTTGTCTGCAATGTGACATGGTAGTACATGTTGGTGGCAAGAGAACACA 889
|||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 233 TGGTAGTTCCCTTTGTCTTCAATGTGACATGGTAGTACATGTTGGTGGGAAGAGAACACA 292
Query 890 CG-GTCGGTTTCTTTTGCTGAGACAGAGAATCGAGTTTCCAGGGGATAAGCCTAA 943
| | |||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 293 CAAG-CGGTTTCTGTTGCTGAGACAGAGAATTGAGTTTCCAGGCGATAAGCCTAA 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5