BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38980.1
Length=1114
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490668 jgi|Araly1|490668|fgenesh2_kg.7__101__AT4G38980.1 1458 0.0
> Ahg490668 jgi|Araly1|490668|fgenesh2_kg.7__101__AT4G38980.1
Length=1116
Score = 1458 bits (789), Expect = 0.0
Identities = 1030/1138 (91%), Gaps = 49/1138 (4%)
Strand=Plus/Plus
Query 4 TCTCAGAGATTTCAAAATTAG-TTT-TTCTTC-----TTCTTCTGAAAATTAGGGTT-TT 55
|||| |||||||||||||||| ||| |||||| |||||| ||||||||||||| ||
Sbjct 1 TCTCGGAGATTTCAAAATTAGTTTTCTTCTTCTTTTGTTCTTCCGAAAATTAGGGTTATT 60
Query 56 TTGGGGGATTCTCGTGTGGATAAAGCCATGGCTGAACGAGAAGACGCAGCAGAGGTTTCT 115
|| ||||||| |||||| | ||||| ||| ||||||||||||||| |||||||||||||
Sbjct 61 TTTGGGGATTTTCGTGTCGCTAAAG--ATGACTGAACGAGAAGACGTAGCAGAGGTTTCT 118
Query 116 CTTTCAGTGAGAAACGAGGAAGATCTTTCTCCTGAATGTGTAGCTTGGGCTGATTCTTGC 175
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 119 CTTTTAGTGAGAAACGAGGAAGATCTTTCTCCTGAATGTTTAGCTTGGGCTGATTCCTGT 178
Query 176 ATCATCAGTTTTCTAGATGATTCAGACAACAATAATTGGGGAACTTTTAGAGATGCTTTA 235
||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 179 ATCATCAGTTTTCCAGATGATTCAGACAACAATAACTGGGGAACTTTCAGAGATGCTTTA 238
Query 236 ACAGAAATCATCGATATCCATCCCGAGATGTTTGTTTTTTCATCAACAACGGGAACAAGA 295
|||||||||||||||||||||||||||||||||||| |||||| || | |||||||||
Sbjct 239 ACAGAAATCATCGATATCCATCCCGAGATGTTTGTTCCTTCATCTAC-A--GGAACAAGA 295
Query 296 GGTGTCCTGTCTCCAGACGAGGTTATGACTGAATCCGAGACTATTGATCTACGGAGATCT 355
|||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| |
Sbjct 296 GGTGTCCTGTCTCCAGACGAGGATATGACTGAATCCGAGCCTATTCATCTACGGAGATTT 355
Query 356 GAACCAGCAGCTGGTTCAGCGAACAGTAGAACTAATTCATCGAATGAAGAAGTTAGCGAG 415
||||||| ||||| |||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 356 GAACCAGAAGCTGATTCAGCGAACTGTAAAACTAATTCATCGAATGAAGAAGTCAGCGAG 415
Query 416 ATTATCTCTATGCTAACTTTTGAATCAGACCCGTCAAAGAATTGC-TTAGAAGATTATTA 474
||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||
Sbjct 416 ATTATCTCTATGCTAACGTTTGAATCAGACCCGTCAAAGAATT-CTTTAGAAGATTATTA 474
Query 475 TTTTCCAGAGTCTATAGCAGAGAATGGAAACC-GTGAACCAGCGGACGG-T--T-CTAAG 529
|||| ||| ||| |||||||||||||| |||| |||||||||||| ||| | | |||
Sbjct 475 TTTTTCAGGGTCCATAGCAGAGAATGG-AACCTGTGAACCAGCGG-CGGATCGTCCTACT 532
Query 530 ACAGATCTTGGAGGTGTTGAAAGTATAGAAGAAGATGGGTCAGTGAGCAATGGAGAGGCT 589
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 533 ACAGATCTTGGAGGTGTTGAAAGTATAGAAGAAGATGGGTCAGTGAGCAATGCAGAGGCT 592
Query 590 --A-AAGAAGAAAAACCAGCGTCAGTATCGTCTCAAGTATTCAAGGATGATTTCATGAGC 646
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 593 GAAGAAGAAGAAGAACCAGCGTCATTATCGTCTCAAGTATTCAAGGATGATTTCATGAGC 652
Query 647 ACATACGTTGAAGACAATGCTGAGGATTGTAATGTTACAGAGGATCCTGTCAAAGTAACT 706
||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||
Sbjct 653 ACATACGTTGAAGACAATGTTGACGATTGTAATGTTACAGAGGTTCCTGTCAAAGTAACT 712
Query 707 TCACAAGAGATTTTCAAAGTGTGGGATCTAG-AGGTTGTGGGGGACAATGATGAGGAAGA 765
|||||||||||||||| ||||||||||| | || |||||||||| |||| ||||||||
Sbjct 713 CCACAAGAGATTTTCAAGGTGTGGGATCT-GCAGATTGTGGGGGATGATGACGAGGAAGA 771
Query 766 TGGGTTGGTGCTGCAGCTGAAGAAGGCCCTCGATGAGTCTTCCACTGTCCAGCCCCTTCC 825
||||||||||||||||||||||||||||||||||||||||||||| | | | ||
Sbjct 772 TGGGTTGGTGCTGCAGCTGAAGAAGGCCCTCGATGAGTCTTCCAC-G----G----T-CC 821
Query 826 ACAGCCACTGAATGATGATCAAGTTGTATCAGAGAAGAGCAATATCGATGATCTGATATC 885
| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
Sbjct 822 A--GCCACTGAATGATGATCACGTTGTAGCAGAGAAGAGCAATATCGATGATCTGATAGC 879
Query 886 TGGAATATCGGATCTGTCTCTTGCAGAAACTTTTAAGTGAACTATG---T----GTATGT 938
||| |||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 880 TGGGATATCGGATCTGTCTCTTGCAGAAACTTTTAAGTGAACGATGAAGTTTAAGTATGT 939
Query 939 GTTTTATTTTGACATCACAAACTCTCT-TTTGCTTTACTACTCCTTAACCGACACAAACC 997
|||| |||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 940 GTTT-ATTTTGACATCAGAAACTCTCTCTTTACTTTACTACTCCTTAACCGACACAAACC 998
Query 998 GGGTTTGAGATTTCAAAATCTGCTACTAGACCAGACCGAAAGGTTTACTGGGTCAATTTG 1057
|| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 999 GGTTTTGAGATTTCAAAATCTGCTACTAGACCAGACCAAAAGGTTTAAAGGGTCAATTTG 1058
Query 1058 GTGCCTACAC-ATCCACTTGGCCACCTGTTGTGCAATGATGACGATGAGATTGCAGTG 1114
||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1059 GTGGCTACACGACCCACTTGGCCACCTGTTGTGCAATGGTGACGATGAGATTGCAGTG 1116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41515856613
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5