BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G38990.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490669 jgi|Araly1|490669|fgenesh2_kg.7__102__AT4G38990.1 917 0.0
Ahg352898 jgi|Araly1|352898|fgenesh1_pg.C_scaffold_7000071 431 5e-120
> Ahg490669 jgi|Araly1|490669|fgenesh2_kg.7__102__AT4G38990.1
Length=1404
Score = 917 bits (496), Expect = 0.0
Identities = 583/624 (93%), Gaps = 10/624 (2%)
Strand=Plus/Plus
Query 1 ATGAAGCCATTGGTTTGCTCGTT-TATAG---TTATCCTCCTCATCCTCCTACCAACGAC 56
|||||||||| | ||||||| || |||| |||| ||||||||| |||||||||||||
Sbjct 1 ATGAAGCCATCGATTTGCTC-TTCCATAGTTCTTATTCTCCTCATCATCCTACCAACGAC 59
Query 57 GATTTCTCACGACTACTCCGATGCTCTCACAAAGTCAATCCTCTTCTTCGAAGGTCAACG 116
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 60 GATTTCTCACGACTACTCCGATGCTCTCACAAAGTCAATCCTCTTCTTTGAAGGTCAACG 119
Query 117 ATCTGGATATCT-CCCAAGAGAACAGAGGATGACGTGGCGCCACAACTCCGCACTCAACG 175
||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CTCTGGATATCTTCCCA-GAGAACAGAGGATGACGTGGCGCCGCAACTCCGCACTCAACG 178
Query 176 ATGGCAAGAACCTCAATGTCGACCTCGTTGGTGGTTACTACGACGCCGGAGACAACATTA 235
| |||||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||
Sbjct 179 ACGGCAAGAACCTCAATGCCAACCTCGTTGGTGGCTACTACGACGCCGGAGATAACATTA 238
Query 236 AATTCCATTTTCCGATGGCTTTTACGACTACGATGCTTGCGTGGAGCGCTATCGACTTCG 295
| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
Sbjct 239 AGTTCCATTTTCCGATGGCTTTTACGGCTACCATGCTTGCGTGGAGCGCTATCGACTTTG 298
Query 296 GAAGTTACATGTCTCCGGCTGATCTCCGGGACAATCTCGTCGCTCTCCGGTGGGGCAGCA 355
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 299 GAAGTTACATGTCTCCGGCTGATCTCAGGGACAATCTCGTCGCTCTCCGGTGGGGCACCA 358
Query 356 ATTATCTCCTCAAGACCGTTTCCCAACTCCCTAATCGCATCTTCGTCCAAGTAGGTGAAC 415
|||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 359 ATTATCTCCTTAAGACCGTTTCGCAACTTCCTAATCGCATCTTCGTCCAAGTAGGTGAAC 418
Query 416 CAACACCGGATCATCAGTGTTGGGAGAGACCAGAGGACATGGACACACCACGGACCGCTT 475
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 419 CAACACCGGATTATCAGTGTTGGGAGAGACCAGAGGATATGGACACACCACGGACAGCTT 478
Query 476 ACGCAC-TGGAAGCACCGAAACCAGCCTCTGATTTAGCTGGAGAAATCGCAGCTGCGTTG 534
|||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACGC-CGTGGAAGCACCGAATCCAGCCTCTGATTTAGCTGGAGAAATCGCAGCTGCGTTG 537
Query 535 GCAGCCGCCTCAATCGCATTCAAACGATTTGATCCTAGATATTCTAAACTATTGCTCGAT 594
|||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 538 GCAGCCGCTTCAATTGCATTCAAACGATTTGATCCTAGATATTCTAAATTGTTGCTCGAT 597
Query 595 AATGCTTTAAGAACTTTTGATGTA 618
|||||||||| ||||||||| |||
Sbjct 598 AATGCTTTAACAACTTTTGA-GTA 620
Score = 652 bits (353), Expect = 0.0
Identities = 381/395 (96%), Gaps = 0/395 (0%)
Strand=Plus/Plus
Query 615 TGTAAACGGATATGAGGATGAATTATTATGGGGAGCTGCATGGCTGAGAAGAGCGACCGG 674
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 693 TGTAAACGGATATGAGGATGAGTTATTATGGGGAGCTGCATGGTTGAGAAGAGCGACCGG 752
Query 675 TAAAGATTCTTACATTAAATACTTAGTGGAGAATCGTCAATCTTTTGGGTCAGATTCCAA 734
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 753 TAAAGATTCTTACATTAAATACTTAGTGGACAATCGTCAATCTTTTGGGTCAGATTCCAA 812
Query 735 TTACTTCGAGTTTGGATGGGATAACAAAGTTGGGGGCGTCAATGTCCTCGTTGCCAAGGA 794
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 813 TTACTTCGAGTTTGGATGGGATAACAAAGTTGGGGGCGTCAATGTTCTCGTTGCAAAGGA 872
Query 795 AGTATTTGAGAAGAATGTTGCTGCGATTGCACCGTATAAGGATACAGCGGAAAAATTGAT 854
||||||||| |||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct 873 AGTATTTGAAAAGAATGTAGCTGGGATTGCACCGTATAAGGACACAGCGGAAAAATTGAT 932
Query 855 GTGTTCGTTTTTTCTGGAAACTCCTGGTGCACATATGAGTTACTCTCCCGGTGGTCTTCT 914
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 933 GTGTTCGTTTTTTCTGGAAACTCCGGGTGCACATATGAGTTACTCTCCCGGTGGCCTTCT 992
Query 915 TTACAAACCCGGAAGCAGCCAGCTCCAAAACACCGTCGCATTGTCTTTTCTCCTTCTCAC 974
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 993 TTACAAACCCGGAAGCAGTCAGCTCCAAAACACCGTCGCATTGTCTTTTCTCCTTCTCAC 1052
Query 975 TTACGCCAATTACCTCTCCAAATCCTCTCAACAAC 1009
||||||||||||||| || ||||||||||||||||
Sbjct 1053 TTACGCCAATTACCTTTCTAAATCCTCTCAACAAC 1087
> Ahg352898 jgi|Araly1|352898|fgenesh1_pg.C_scaffold_7000071
Length=1476
Score = 431 bits (233), Expect = 5e-120
Identities = 455/561 (81%), Gaps = 20/561 (4%)
Strand=Plus/Plus
Query 46 CTACCAACGACGATTTCTCACGACTACTCCGATGCTCTCACAAAGTCAATCCTCTTCTTC 105
||||||||| |||| |||||||||||||||| ||||| | ||||||||| ||||| |||
Sbjct 46 CTACCAACGGCGATCCCTCACGACTACTCCGACGCTCTTAGAAAGTCAATACTCTTTTTC 105
Query 106 GAAGGTCAACGATCTGGAT-ATCTCCCAAGAGAACAGAGGATGACGTGGCGCCA-CAACT 163
||||||||||| ||||| | ||| |||| | |||| |||||||||||||| | || |
Sbjct 106 GAAGGTCAACGCTCTGG-TCGTCTTCCAAAACAACAAAGGATGACGTGGCG-TAGTAATT 163
Query 164 CCGCACTCAACGATGG-CAAGAACCTC-AATGTCGACCTCGTTGGTGGTTACTACGACGC 221
| ||||||||||| || | | || ||| || | ||||||||||||||||||||||||||
Sbjct 164 CTGCACTCAACGACGGCCGA-AATCTCAAAACT-GACCTCGTTGGTGGTTACTACGACGC 221
Query 222 CGGAGACAACATTAAATTCCATTTTCCGATGGCTTTTACGACTACGATGCTTGCGTGGAG 281
|||||||||| |||| || |||||||| |||||||||||| | ||||||||||| |||||
Sbjct 222 CGGAGACAACGTTAAGTTTCATTTTCCTATGGCTTTTACGGCCACGATGCTTGCTTGGAG 281
Query 282 CGCTATCGACTTCGGAAGTTACATGTCTCCGGCTGATCTCCGGGACAATCTCGTCGCTCT 341
|||| ||||||||| | || ||||||| | |||| || | | |||||||| || ||
Sbjct 282 TTCTATTGACTTCGGACGCTATATGTCTCAGAATGATTTCAGACATAATCTCGTAGCCCT 341
Query 342 CCGGTGGGGCAGCA-ATTATCTCCTCAAGACCGTTTCCCAACTCCCTAATCGCATCTTCG 400
| ||||| || | |||||||||| ||||||||||| ||||||||| ||||||| ||||
Sbjct 342 CAAGTGGGCCA-CTGATTATCTCCTTAAGACCGTTTCACAACTCCCTGATCGCATTTTCG 400
Query 401 TCCAAGTAGGTGAACCAACAC-CGGATCATCAGTGTTGGGAGAGACCAGAGGACATGGAC 459
|||||||||||||| || || | || ||| | |||||||| ||||| || || ||||||
Sbjct 401 TCCAAGTAGGTGAAGCA-CAAGCAGACCATGATTGTTGGGAAAGACCGGAAGATATGGAC 459
Query 460 ACACCACGGACCGCTTACGCACTG-GAAGCACCGAAA-CCAGCCTCTGATTTAGCTGGAG 517
|| ||||| || |||| ||| || || ||||| | | |||||||| |||||||| ||||
Sbjct 460 ACGCCACGAACTGCTTTCGC-CTTAGATGCACC-ATATCCAGCCTCCGATTTAGCGGGAG 517
Query 518 AAATCGCAGCTGCGTTGGCAGCCGCCTCAATCGCATTCAAACGATTTGATCCTA-GATAT 576
|||| ||||| || ||||||||||| ||||| |||||||||| | |||||| | |||
Sbjct 518 AAATTGCAGCAGCTTTGGCAGCCGCTTCAATTGCATTCAAACAAGCAAATCCTAAG-TAT 576
Query 577 TCTA-AACTATTGCTCGATAA 596
|| | || |||| ||| ||||
Sbjct 577 TCCACAA-TATTACTCAATAA 596
Score = 303 bits (164), Expect = 1e-81
Identities = 324/400 (81%), Gaps = 16/400 (4%)
Strand=Plus/Plus
Query 615 TGTAAACGGATATGAGGATGAATTATTATGGGGAGCTGCATGGCTGAGAAGAGCGACCGG 674
||| || |||||| |||| || || ||||||||||||| ||||||||| |||| |||||
Sbjct 690 TGTTAATGGATATAAGGACGAGTTGCTATGGGGAGCTGCGTGGCTGAGACGAGCAACCGG 749
Query 675 TAAAGATTCTTA-CATTAAATACTTAGTGGA-GAATCGTCAATCTTTTGGGT-CAGATTC 731
|||||| ||| | | | ||||||||| || ||| ||||| |||| ||| || |||
Sbjct 750 CGAAGATTATTATC-TGACATACTTAGT-GACCAATGGTCAA-GTTTTCGGTGCAAATTT 806
Query 732 CAATTACTTCGAGTTTGGATGGGATAACAAAGTTGGGGGCGTCAATGTCCTCGTTGCCAA 791
|||||||||||||||||| ||||| ||||| |||||||| || ||||| ||| |||||||
Sbjct 807 CAATTACTTCGAGTTTGGCTGGGACAACAAGGTTGGGGGTGTTAATGTTCTCATTGCCAA 866
Query 792 GGAAGTATTTGAGAAGAATGTTG-CTGCGATT-GCACCGTATAAGGATACAGCGGA-AAA 848
||||||||||||||||||||| | ||||| || ||| | ||||| ||||| || || |||
Sbjct 867 GGAAGTATTTGAGAAGAATGT-GACTGCG-TTAGCAGCATATAAAGATACCGCAGAGAAA 924
Query 849 ATTGATGTGTTCGTTTTTTCTGGAAACTCC-TGGTGCACATATGAGTTACTCTCCCGGTG 907
|| ||||||| | ||||| | |||||| | |||| ||||||||| |||| ||||||| |
Sbjct 925 AT-GATGTGTGCATTTTTGCCGGAAAC-CAATGGTCCACATATGACTTACACTCCCGGCG 982
Query 908 GTCTTCTTTACAAACCCGGAAGCAGCCAGCTCCAAAACACCGTCGCATTGTCTTTTCTCC 967
|||| |||||||||| ||||||||| ||||| || ||||| | |||| | ||||| || |
Sbjct 983 GTCTCCTTTACAAACACGGAAGCAGTCAGCTACAGAACACGGCCGCACTATCTTTCCTTC 1042
Query 968 TTCTCACTTACGCCA-ATTACCTCTCCAAATCCTCTCAAC 1006
| || || || || | |||||||| | | |||||||||||
Sbjct 1043 TCCTTACCTATGC-AGATTACCTCACTACATCCTCTCAAC 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5