BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39000.1
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
Ahg352898 jgi|Araly1|352898|fgenesh1_pg.C_scaffold_7000071 2239 0.0
> Ahg352898 jgi|Araly1|352898|fgenesh1_pg.C_scaffold_7000071
Length=1476
Score = 2239 bits (1212), Expect = 0.0
Identities = 1398/1487 (94%), Gaps = 16/1487 (1%)
Strand=Plus/Plus
Query 1 ATGAAAGCTTCGATTTACCTTGTAACCGTTTTCATACTTCTACTTCTGCTTCTACCAACG 60
|||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAAACCTTCGATTTACTTTGTAACCGTTTTCATACTTCTA------CTTCTACCAACG 54
Query 61 GCGATCCCTCACGACTATTCCGATGCTCTTAGAAAGTCAATCCTCTTTTTCGAAGGTCAA 120
||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 55 GCGATCCCTCACGACTACTCCGACGCTCTTAGAAAGTCAATACTCTTTTTCGAAGGTCAA 114
Query 121 CGCTCTGGTCGTCTTCCAAAACAACAAAGGATGGCGTGGCGTAGAAACTCTGCACTCAAC 180
||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||
Sbjct 115 CGCTCTGGTCGTCTTCCAAAACAACAAAGGATGACGTGGCGTAGTAATTCTGCACTCAAC 174
Query 181 GACGGAAAAAACCTCAAAACCGACCTCGTTGGTGGTTACTACGACGCCGGGGACAACGTT 240
||||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 175 GACGGCCGAAATCTCAAAACTGACCTCGTTGGTGGTTACTACGACGCCGGAGACAACGTT 234
Query 241 AAGTTTCATTTTCCGATGGCTTTTACGGCCACGATGCTTGCTTGGAGTTCTGTTGACTTC 300
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 235 AAGTTTCATTTTCCTATGGCTTTTACGGCCACGATGCTTGCTTGGAGTTCTATTGACTTC 294
Query 301 GGACGCTATATGTCTCAGCATGATTTCAGACATAATCTCGTAGCCGTCAAGTGGGCCACT 360
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 295 GGACGCTATATGTCTCAGAATGATTTCAGACATAATCTCGTAGCCCTCAAGTGGGCCACT 354
Query 361 GATTATCTCCTTAAGACCGTTTCACAACTCCCTAATCGCATTTTCGTCCACGTCGGTGAA 420
||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||
Sbjct 355 GATTATCTCCTTAAGACCGTTTCACAACTCCCTGATCGCATTTTCGTCCAAGTAGGTGAA 414
Query 421 GTACAACCGGACCACGATTGTTGGGAAAGACCGGAAGATATGGACACGCCACGAACCGCT 480
| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 415 GCACAAGCAGACCATGATTGTTGGGAAAGACCGGAAGATATGGACACGCCACGAACTGCT 474
Query 481 TTCGCCTTAGATGCACCATATCCAGCCTCCGATTTAGCGGGAGAAATCGCAGCAGCTTTA 540
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 475 TTCGCCTTAGATGCACCATATCCAGCCTCCGATTTAGCGGGAGAAATTGCAGCAGCTTTG 534
Query 541 GCAGCCGCTTCAATTGCATTCAAACAAGCAAATCCTAAGTATTCCGCAATATTACTCAAT 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 535 GCAGCCGCTTCAATTGCATTCAAACAAGCAAATCCTAAGTATTCCACAATATTACTCAAT 594
Query 601 AAAGCCGTACAAACGTTTCAGTACGCAGATTCACATCGAGGTTCTTACACCGATAATCCG 660
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct 595 AAAGCCGTACAAACGTTTCAGTATGCAGATTCACATCGAGGTTCTTATACCGAAAATCCG 654
Query 661 GGAATCAAGCAAGCCGTTTGCCCGTTTTACTGTAGTGTTAATGGATATAAGGACGAGTTG 720
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 GGAGTCAAACAAGCCGTTTGCCCGTTTTACTGTAGTGTTAATGGATATAAGGACGAGTTG 714
Query 721 CTATGGGGAGCTGCGTGGTTGAGACGAGCAACCGGCGAAGATTCTTATCTGAGATACTTA 780
|||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||
Sbjct 715 CTATGGGGAGCTGCGTGGCTGAGACGAGCAACCGGCGAAGATTATTATCTGACATACTTA 774
Query 781 GTGGA-CAATGGTCAAGCTTTCGGTG-AAAGTTCCAATTACTTTGAGTTTGGCTGGGACA 838
|| || ||||||||||| |||||||| ||| || ||||||||| ||||||||||||||||
Sbjct 775 GT-GACCAATGGTCAAGTTTTCGGTGCAAA-TTTCAATTACTTCGAGTTTGGCTGGGACA 832
Query 839 ACAAAGTTGGGGGTGTTAATGTTCTCGTTGCCAAGGAAGTACTTCAGAATAATGTGACCG 898
|||| ||||||||||||||||||||| |||||||||||||| || |||| |||||||| |
Sbjct 833 ACAAGGTTGGGGGTGTTAATGTTCTCATTGCCAAGGAAGTATTTGAGAAGAATGTGACTG 892
Query 899 CGATAGCCGCATATAAAGATACCGCGGAGAAAATGATGTGTTCATTTTTGCCGGAAACCA 958
|| |||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 893 CGTTAGCAGCATATAAAGATACCGCAGAGAAAATGATGTGTGCATTTTTGCCGGAAACCA 952
Query 959 ATGGTCCACATATGTCTTACACTCCCGGCGGTCTCATTTACAAAC-CTGGAAGCACTCAG 1017
|||||||||||||| |||||||||||||||||||| ||||||||| | ||||||| ||||
Sbjct 953 ATGGTCCACATATGACTTACACTCCCGGCGGTCTCCTTTACAAACAC-GGAAGCAGTCAG 1011
Query 1018 CTCCAGAACACGGCCGCACTATCTTTCCTTCTCCTTACCTACGCAGATTACCTCTCTACA 1077
|| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1012 CTACAGAACACGGCCGCACTATCTTTCCTTCTCCTTACCTATGCAGATTACCTCACTACA 1071
Query 1078 TCTTCTCAA-CAGCTCAATTGCGGTAACCTCAAGTTTCAACCGGATTCTCTTCGCCGCAT 1136
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TCCTCTCAACCA-CTCAATTGCGGTAACCTCAAGTTTCAACCGGATTCTCTTCGCCGCAT 1130
Query 1137 AGTCAAACGACAGGTAGACTACGTTTTGGGAGATAATCCAATGAAGTTGTCATACATGAT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 AGTCAAACGACAGGTAGACTACGTTTTGGGAGATAATCCAATGAAGTTGTCATACATGAT 1190
Query 1197 TGGGTACGGCGAGCGGTACCCGGGACTGATCCACCACCGTGGCTCGTCTATACCGTCTGT 1256
|||||| || |||| ||||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 1191 TGGGTATGGTGAGCAGTACCCGCGACTGATCCACCACCGTGGCTCGTCTATTCCGTCTTT 1250
Query 1257 TACCGTTCATCCGGCTGCCTTTGGGTGCAT-AGCAGGATGGAATATTTTCTCATCACCCA 1315
||||||||||||| |||| ||||||||| | ||||||||||||||||||| |||||||||
Sbjct 1251 TACCGTTCATCCGACTGCATTTGGGTGC-TCAGCAGGATGGAATATTTTCGCATCACCCA 1309
Query 1316 ATCCAAACCCCAACATTCTTATAGGTGCGGTGATTGGCGGGCCTGACGTAGATGATAGAT 1375
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1310 ATCCAAACCCCAACATTCTTATTGGTGCGGTGATTGGCGGGCCTGACGCAGATGATAAAT 1369
Query 1376 TTATTGGAGGTCGGACAAATGCTAGTGAGACTGAGCCCACAACCTACATCAATGCACCTT 1435
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1370 TTATTGGAGGTCGGACAAATGCTAGTGAGACTGAGCCCACAACGTACATCAATGCACCTT 1429
Query 1436 TTGTTGGTGTCTTTGCGTACTTCAAAAGCAACCCCAACTTCTCTTGA 1482
|||||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 1430 TTGTTGGTGTATTTGCGTACTTTAAAAGCAACCCCAAGTTCTCTTGA 1476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55459396720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5