BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39010.1
Length=1835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943869 jgi|Araly1|943869|scaffold_700098.1 2401 0.0
> Ahg943869 jgi|Araly1|943869|scaffold_700098.1
Length=1534
Score = 2401 bits (1300), Expect = 0.0
Identities = 1460/1538 (95%), Gaps = 7/1538 (0%)
Strand=Plus/Plus
Query 64 CACCGACGCCGATACACCATGAAATTACATTTACACCCTCTCTCACTTGtcttcttcttt 123
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 3 CACCGACGCCGATACACCATGAAATTACATTTATACCCTCTCTCACTTGTCTTCAGCTTC 62
Query 124 ttcttcttcttcttcCGACCGACAATGTCGTCGAACCAGCACGATTACTCCGACGCACTC 183
||| || || || |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TTCCTCCTCCTCCTCCGTCCGACAATGTCGTCGAACCAGCACGATTACTCCGACGCACTC 122
Query 184 TCAAAATCAATTCTCTTCTTCGAAGGCCAGCGCTCCGGTTACCTCCCAAACGACCAGCGT 243
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 123 TCAAAATCAATCCTCTTCTTCGAAGGCCAACGCTCCGGTTACCTCCCAAACGACCAGCGT 182
Query 244 ATGACCTGGCGCCGTAACTCCGGTCTGAGCGACGGTTGGACACACAACATC-GATTTAAC 302
||||| ||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||
Sbjct 183 ATGACGTGGCGTCGTAATTCCGGTCTGAGCGACGGTTGGACACACAACA-CAGATTTAAC 241
Query 303 CGGCGGTTATTACGACGCCGGAGACAACGTCAAATTCAATTTCCCGATGGCTTTCACCAC 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 242 CGGCGGTTATTACGACGCCGGAGACAACGTCAAATTCAATTTCCCGATGGCTTTCACAAC 301
Query 363 CACAATGCTCGCCTGGAGCGTAATTGAGTTCGGCGAATTCATGCCTTCGTCGGAGCTACG 422
|||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 302 CACAATGCTCGCGTGGAGCGTAATTGAATTCGGCGAACTCATGCCTTCGTCGGAGCTACG 361
Query 423 TAACTCTCTCGTGGCTCTCCGGTGGAGCTCTAATTACCTCCTCAAATCCGTTTCACAGCT 482
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 362 AAACTCCCTCGTGGCTCTCCGGTGGAGCTCTAATTACCTCCTCAAATCCGTTTCTCAGCT 421
Query 483 ACCTAACCGGATCTTCGTCCAGGTAGGTGATCCGATAGCAGATCATAATTGCTGGGAAAG 542
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 422 ACCAAACCGGATCTTCGTCCAGGTAGGTGATCCAATAGCAGATCATAACTGCTGGGAAAG 481
Query 543 ACCAGAAGACATGGATACACCACGGACTGCTTACGCCGTTAATGCCCCGAATCCGGCTTC 602
||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 482 ACCAGAAGATATGGATACACCACGGACTGCTTACGTTGTTAATGCCCCAAATCCGGCTTC 541
Query 603 TGAAGTTGCCGGAGAAACTACGGCGGCCCTCTCAGCTGCTTCGATTGCTTTCCGATCATC 662
|||||| ||||||||||| ||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 542 TGAAGTGGCCGGAGAAACAACGGCAGCCCTCTCAGCTGCTTCAATTGCTTTTCGATCATC 601
Query 663 GGATCCAGGATACTCTCAAACATTGCTCCAAAATGCTGTCAAAACTTTTCAGTTCGCTGA 722
|||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||
Sbjct 602 GGATGCAGGATACTCTCAGACATTGCTCCAAAATGCCGTCAAAACTTTCCAGTTCGCTGA 661
Query 723 TATGTATCGCGGTGCTTATAGCAGCAATGACGATATCAAAAATGATGTGTGTCCTTTCTA 782
|||||||||||||||||||||||||||||| |||||||||||||| || || ||||||||
Sbjct 662 TATGTATCGCGGTGCTTATAGCAGCAATGATGATATCAAAAATGACGTTTGCCCTTTCTA 721
Query 783 CTGCGATTTCAACGGATTTCAGGATGAGTTATTGTGGGGAGCAGCTTGGCTAAGAAAAGC 842
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 722 CTGCGATTTCAACGGATTTCAGGATGAGTTATTGTGGGGAGCAGCTTGGTTGAGAAAAGC 781
Query 843 GACTGGTGATGAAAGCTACCTTAATTACATAGAGAGTAACCGTGAACCGTTTGGTGCTAA 902
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GACTGGTGATGAAAGCTACCTTAATTACATAGAGAGTAACCGTGAACCGTTTGGTGCTAG 841
Query 903 CGATAACGTAGACGAATTTGGCTGGGACAACAAAGTTGGTGGACTTAATGTTCTCGTTTC 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 CGATAACGTAGACGAATTTGGCTGGGACAACAAAGTTGGTGGACTTAATGTTCTCGTTTC 901
Query 963 GAAGGAAGTTATTGAAGGAAATATGTACAACTTAGAGGCGTACAAGGCATCAGCAGAGAG 1022
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 902 AAAGGAAGTTATACAAGGAAATATGTACAACTTAGAGGCGTACAAGGCATCGGCGGAGAG 961
Query 1023 CTTCATGTGTAGTCTGGTCCCGGAATCTTCGGGACCGCATGTTGAGTATACTTCCGCTGG 1082
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 962 CTTCATGTGTAGTCTGGTCCCGGAATCTTCAGGACCGCATGTTGAGTATACTCCCGCCGG 1021
Query 1083 TCTACTTTACAAGCCCGGCGGTAGCCAGCTCCAACATGCGACCACCATATCTTTCCTCCT 1142
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TCTACTTTACAAACCCGGCGGTAGCCAGCTCCAACATGCGACCACCATATCTTTCCTCCT 1081
Query 1143 CCTCGTATACGCTCAATATCTTTCAAGAAGCTCTCTCTCCCTCAATTGCGGCACCCTTAC 1202
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 CCTTGTATACGCGCAATATCTTTCAAGAAGCTCTCTCTCCCTCAATTGCGGCACCCTTAC 1141
Query 1203 CGTCCCTCCTGATTATCTCCGCCGTCTTGCCAAGAAACAGGTGGACTATATATTGGGGAA 1262
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1142 CATCCCTCCTGATCATCTCCGCCGTCTTGCCAAGAAACAGGTGGACTATATATTGGGGGA 1201
Query 1263 TAATCCGATGGGATTATCGTACATGGTCGGATACGGAGAGAGATATCCAAAGAGGATCCA 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 TAATCCGATGGGATTATCGTACATGGTCGGATACGGAGAGAGATATCCAAAGAGGATCCA 1261
Query 1323 TCACCGTGGCTCATCATTGCCATCGATTGTGGACCATCCAGAAGCCATCAGATGCAAAGA 1382
|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 1262 CCACCGTGGCTCATCATTGCCATCGATCAAGGATCATCCAGAAGCCATCAGATGCAAAGA 1321
Query 1383 CGGGTCGGTTTATTTCAATTCTACCGAACCGAACCCGAACGTTTTGATTGGAGCGGTGGT 1442
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1322 TGGGTCGGTTTATTTCAATTCCACCGAACCAAACCCGAACGTTTTGATTGGAGCGGTGGT 1381
Query 1443 GGGTGGGCCCGGAGAGGACGATATGTACGATGATGATCGGTCCGATTTCCGCAAGTCCGA 1502
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1382 GGGTGGGCCTGGAGAGGACGATAAGTACGATGATGATCGGTCCGATTTCCGCAAGTCCGA 1441
Query 1503 GCCCACTACTTACATCAATGCTCCTTTCGTTGGCGTTTTGGCGTACTTTGCAGCCAATCC 1562
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1442 GCCCACTACTTACATCAATGCTCCTTTCGTTGGCGTATTGGCGTACTTTGCAGCCAATCC 1501
Query 1563 TGGTTCTAGCTAAGCTGACGACATGGGAGTAAAATTGG 1600
||||||||||||| | | | | |||||||| ||||||
Sbjct 1502 TGGTTCTAGCTAA-C-GTC-A--TGGGAGTAGAATTGG 1534
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68905253205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5