BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39010.1 Length=1835 Score E Sequences producing significant alignments: (Bits) Value Ahg943869 jgi|Araly1|943869|scaffold_700098.1 2401 0.0 > Ahg943869 jgi|Araly1|943869|scaffold_700098.1 Length=1534 Score = 2401 bits (1300), Expect = 0.0 Identities = 1460/1538 (95%), Gaps = 7/1538 (0%) Strand=Plus/Plus Query 64 CACCGACGCCGATACACCATGAAATTACATTTACACCCTCTCTCACTTGtcttcttcttt 123 ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 3 CACCGACGCCGATACACCATGAAATTACATTTATACCCTCTCTCACTTGTCTTCAGCTTC 62 Query 124 ttcttcttcttcttcCGACCGACAATGTCGTCGAACCAGCACGATTACTCCGACGCACTC 183 ||| || || || |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 63 TTCCTCCTCCTCCTCCGTCCGACAATGTCGTCGAACCAGCACGATTACTCCGACGCACTC 122 Query 184 TCAAAATCAATTCTCTTCTTCGAAGGCCAGCGCTCCGGTTACCTCCCAAACGACCAGCGT 243 ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 123 TCAAAATCAATCCTCTTCTTCGAAGGCCAACGCTCCGGTTACCTCCCAAACGACCAGCGT 182 Query 244 ATGACCTGGCGCCGTAACTCCGGTCTGAGCGACGGTTGGACACACAACATC-GATTTAAC 302 ||||| ||||| ||||| ||||||||||||||||||||||||||||||| | |||||||| Sbjct 183 ATGACGTGGCGTCGTAATTCCGGTCTGAGCGACGGTTGGACACACAACA-CAGATTTAAC 241 Query 303 CGGCGGTTATTACGACGCCGGAGACAACGTCAAATTCAATTTCCCGATGGCTTTCACCAC 362 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 242 CGGCGGTTATTACGACGCCGGAGACAACGTCAAATTCAATTTCCCGATGGCTTTCACAAC 301 Query 363 CACAATGCTCGCCTGGAGCGTAATTGAGTTCGGCGAATTCATGCCTTCGTCGGAGCTACG 422 |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| Sbjct 302 CACAATGCTCGCGTGGAGCGTAATTGAATTCGGCGAACTCATGCCTTCGTCGGAGCTACG 361 Query 423 TAACTCTCTCGTGGCTCTCCGGTGGAGCTCTAATTACCTCCTCAAATCCGTTTCACAGCT 482 ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 362 AAACTCCCTCGTGGCTCTCCGGTGGAGCTCTAATTACCTCCTCAAATCCGTTTCTCAGCT 421 Query 483 ACCTAACCGGATCTTCGTCCAGGTAGGTGATCCGATAGCAGATCATAATTGCTGGGAAAG 542 ||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 422 ACCAAACCGGATCTTCGTCCAGGTAGGTGATCCAATAGCAGATCATAACTGCTGGGAAAG 481 Query 543 ACCAGAAGACATGGATACACCACGGACTGCTTACGCCGTTAATGCCCCGAATCCGGCTTC 602 ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 482 ACCAGAAGATATGGATACACCACGGACTGCTTACGTTGTTAATGCCCCAAATCCGGCTTC 541 Query 603 TGAAGTTGCCGGAGAAACTACGGCGGCCCTCTCAGCTGCTTCGATTGCTTTCCGATCATC 662 |||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| Sbjct 542 TGAAGTGGCCGGAGAAACAACGGCAGCCCTCTCAGCTGCTTCAATTGCTTTTCGATCATC 601 Query 663 GGATCCAGGATACTCTCAAACATTGCTCCAAAATGCTGTCAAAACTTTTCAGTTCGCTGA 722 |||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| Sbjct 602 GGATGCAGGATACTCTCAGACATTGCTCCAAAATGCCGTCAAAACTTTCCAGTTCGCTGA 661 Query 723 TATGTATCGCGGTGCTTATAGCAGCAATGACGATATCAAAAATGATGTGTGTCCTTTCTA 782 |||||||||||||||||||||||||||||| |||||||||||||| || || |||||||| Sbjct 662 TATGTATCGCGGTGCTTATAGCAGCAATGATGATATCAAAAATGACGTTTGCCCTTTCTA 721 Query 783 CTGCGATTTCAACGGATTTCAGGATGAGTTATTGTGGGGAGCAGCTTGGCTAAGAAAAGC 842 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 722 CTGCGATTTCAACGGATTTCAGGATGAGTTATTGTGGGGAGCAGCTTGGTTGAGAAAAGC 781 Query 843 GACTGGTGATGAAAGCTACCTTAATTACATAGAGAGTAACCGTGAACCGTTTGGTGCTAA 902 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 GACTGGTGATGAAAGCTACCTTAATTACATAGAGAGTAACCGTGAACCGTTTGGTGCTAG 841 Query 903 CGATAACGTAGACGAATTTGGCTGGGACAACAAAGTTGGTGGACTTAATGTTCTCGTTTC 962 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 CGATAACGTAGACGAATTTGGCTGGGACAACAAAGTTGGTGGACTTAATGTTCTCGTTTC 901 Query 963 GAAGGAAGTTATTGAAGGAAATATGTACAACTTAGAGGCGTACAAGGCATCAGCAGAGAG 1022 ||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 902 AAAGGAAGTTATACAAGGAAATATGTACAACTTAGAGGCGTACAAGGCATCGGCGGAGAG 961 Query 1023 CTTCATGTGTAGTCTGGTCCCGGAATCTTCGGGACCGCATGTTGAGTATACTTCCGCTGG 1082 |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || Sbjct 962 CTTCATGTGTAGTCTGGTCCCGGAATCTTCAGGACCGCATGTTGAGTATACTCCCGCCGG 1021 Query 1083 TCTACTTTACAAGCCCGGCGGTAGCCAGCTCCAACATGCGACCACCATATCTTTCCTCCT 1142 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1022 TCTACTTTACAAACCCGGCGGTAGCCAGCTCCAACATGCGACCACCATATCTTTCCTCCT 1081 Query 1143 CCTCGTATACGCTCAATATCTTTCAAGAAGCTCTCTCTCCCTCAATTGCGGCACCCTTAC 1202 ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1082 CCTTGTATACGCGCAATATCTTTCAAGAAGCTCTCTCTCCCTCAATTGCGGCACCCTTAC 1141 Query 1203 CGTCCCTCCTGATTATCTCCGCCGTCTTGCCAAGAAACAGGTGGACTATATATTGGGGAA 1262 | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1142 CATCCCTCCTGATCATCTCCGCCGTCTTGCCAAGAAACAGGTGGACTATATATTGGGGGA 1201 Query 1263 TAATCCGATGGGATTATCGTACATGGTCGGATACGGAGAGAGATATCCAAAGAGGATCCA 1322 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1202 TAATCCGATGGGATTATCGTACATGGTCGGATACGGAGAGAGATATCCAAAGAGGATCCA 1261 Query 1323 TCACCGTGGCTCATCATTGCCATCGATTGTGGACCATCCAGAAGCCATCAGATGCAAAGA 1382 |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| Sbjct 1262 CCACCGTGGCTCATCATTGCCATCGATCAAGGATCATCCAGAAGCCATCAGATGCAAAGA 1321 Query 1383 CGGGTCGGTTTATTTCAATTCTACCGAACCGAACCCGAACGTTTTGATTGGAGCGGTGGT 1442 |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 1322 TGGGTCGGTTTATTTCAATTCCACCGAACCAAACCCGAACGTTTTGATTGGAGCGGTGGT 1381 Query 1443 GGGTGGGCCCGGAGAGGACGATATGTACGATGATGATCGGTCCGATTTCCGCAAGTCCGA 1502 ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1382 GGGTGGGCCTGGAGAGGACGATAAGTACGATGATGATCGGTCCGATTTCCGCAAGTCCGA 1441 Query 1503 GCCCACTACTTACATCAATGCTCCTTTCGTTGGCGTTTTGGCGTACTTTGCAGCCAATCC 1562 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1442 GCCCACTACTTACATCAATGCTCCTTTCGTTGGCGTATTGGCGTACTTTGCAGCCAATCC 1501 Query 1563 TGGTTCTAGCTAAGCTGACGACATGGGAGTAAAATTGG 1600 ||||||||||||| | | | | |||||||| |||||| Sbjct 1502 TGGTTCTAGCTAA-C-GTC-A--TGGGAGTAGAATTGG 1534 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 68905253205 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5