BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39020.1
Length=510
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327853 jgi|Araly1|327853|fgenesh1_pm.C_scaffold_7000080 409 1e-113
> Ahg327853 jgi|Araly1|327853|fgenesh1_pm.C_scaffold_7000080
Length=1122
Score = 409 bits (221), Expect = 1e-113
Identities = 252/267 (94%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 244 GAAGCCAATGATGGAGTCAATGCTTCTCAAATGCATAATGGAACATCAGACGCCATGGGA 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 GAAGCCAATGATGGAGTCAATGCTTCTCAAATGCATAATGGAACATCAGACGCCATGGGA 915
Query 304 TATTTCTTAGGAGAGGTCATGTTTCCATATCAAGCTGATTCAGATTTTGAGCTCAGCTTA 363
|| ||||||||||||||||||||||| ||||||||||| || ||||||||||||| ||||
Sbjct 916 TACTTCTTAGGAGAGGTCATGTTTCCGTATCAAGCTGAATCTGATTTTGAGCTCACCTTA 975
Query 364 TCAGTTGGAGACTATGTTGTTATCAGAGAGGTAGTGAGTAGCGTGTGGGCAGAAGGAGAA 423
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 976 TCAGTTGGAGAGTATGTTGTTATCAGAGAGGTAGTGAGTAGCGGGTGGGCAGAAGGAGAA 1035
Query 424 TGTAAAGGCAACGCGGGTTGGTTTACTTAC-ATCTACATCGAAAGAAGGGATCGTGTCTT 482
||||||||||| ||||| |||||| |||| || |||||||||||||||||||||||| |
Sbjct 1036 TGTAAAGGCAAAGCGGGGTGGTTTCCTTATGAT-TACATCGAAAGAAGGGATCGTGTCCT 1094
Query 483 CGCAACTAAGGTCATCGAGGTCTTCTA 509
||||||||||||||||||||| |||||
Sbjct 1095 CGCAACTAAGGTCATCGAGGTGTTCTA 1121
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18543616254
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5