BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39020.1 Length=510 Score E Sequences producing significant alignments: (Bits) Value Ahg327853 jgi|Araly1|327853|fgenesh1_pm.C_scaffold_7000080 409 1e-113 > Ahg327853 jgi|Araly1|327853|fgenesh1_pm.C_scaffold_7000080 Length=1122 Score = 409 bits (221), Expect = 1e-113 Identities = 252/267 (94%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 244 GAAGCCAATGATGGAGTCAATGCTTCTCAAATGCATAATGGAACATCAGACGCCATGGGA 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 856 GAAGCCAATGATGGAGTCAATGCTTCTCAAATGCATAATGGAACATCAGACGCCATGGGA 915 Query 304 TATTTCTTAGGAGAGGTCATGTTTCCATATCAAGCTGATTCAGATTTTGAGCTCAGCTTA 363 || ||||||||||||||||||||||| ||||||||||| || ||||||||||||| |||| Sbjct 916 TACTTCTTAGGAGAGGTCATGTTTCCGTATCAAGCTGAATCTGATTTTGAGCTCACCTTA 975 Query 364 TCAGTTGGAGACTATGTTGTTATCAGAGAGGTAGTGAGTAGCGTGTGGGCAGAAGGAGAA 423 ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 976 TCAGTTGGAGAGTATGTTGTTATCAGAGAGGTAGTGAGTAGCGGGTGGGCAGAAGGAGAA 1035 Query 424 TGTAAAGGCAACGCGGGTTGGTTTACTTAC-ATCTACATCGAAAGAAGGGATCGTGTCTT 482 ||||||||||| ||||| |||||| |||| || |||||||||||||||||||||||| | Sbjct 1036 TGTAAAGGCAAAGCGGGGTGGTTTCCTTATGAT-TACATCGAAAGAAGGGATCGTGTCCT 1094 Query 483 CGCAACTAAGGTCATCGAGGTCTTCTA 509 ||||||||||||||||||||| ||||| Sbjct 1095 CGCAACTAAGGTCATCGAGGTGTTCTA 1121 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18543616254 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5