BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39030.1
Length=2031
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490671 jgi|Araly1|490671|fgenesh2_kg.7__104__AT4G39030.1 2907 0.0
> Ahg490671 jgi|Araly1|490671|fgenesh2_kg.7__104__AT4G39030.1
Length=2002
Score = 2907 bits (1574), Expect = 0.0
Identities = 1898/2045 (93%), Gaps = 59/2045 (3%)
Strand=Plus/Plus
Query 3 ATCTCGAGGCGCcaaaaacaacaacaaaaaaaaCTTCAGAGCGGTGATCAGATTCACCGA 62
|||||||||||||||||||||| | |||||||||| ||||||||||||||||||| |
Sbjct 1 ATCTCGAGGCGCCAAAAACAAC--C---AAAAACTTCATAGCGGTGATCAGATTCACCAA 55
Query 63 TTTT-TCTCAAAATGCTAATCAAATCCCAAAGATTGACTCTTTTCTCTCCTCTCTTGT-C 120
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
Sbjct 56 TTTTCTCTCAAAATGCTAATCAAATCCCAAAGATTGACCCTTTTCTCTCCTCTCTT-TCC 114
Query 121 CAAAACAAGACGGATCCCGGTTAACTCCCACCAAACACTGGTCGCAGAATCGGTGATAAC 180
|||| |||||| ||| |||||||||| |||||| ||||||||||||||||||||| ||||
Sbjct 115 CAAACCAAGACCGATTCCGGTTAACTACCACCAGACACTGGTCGCAGAATCGGTGCTAAC 174
Query 181 TCGGAGAACACTCGGTGCGATCACCGCAACTCCGAGTTTTCATA-AAAATCCGGTGGTGA 239
|||||||| |||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 175 TCGGAGAAAACTCGGTGCGATCACCGCAACTCCGAGTTTCCA-AGGAAATCCGGTGGTGA 233
Query 240 -TTCGACGGAGGATCAAATTAGAG-AGAGTTACGAGGAACTGCGTCAG-AATTGATCGGG 296
| || ||||| |||||||||||| | |||||||||||||||| || | |||||||||||
Sbjct 234 CTCCG-CGGAGAATCAAATTAGAGCA-AGTTACGAGGAACTGCATC-GAAATTGATCGGG 290
Query 297 AAATCGACgaagaagaagaagaagaggagaaggagagagGGGATCTGGTGAAACAGAGCA 356
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 291 AAATCGAC------GAAGAAGAAGAGGAGAAGAAGAGAGGGGATCTGGTGAAACAGAGCA 344
Query 357 TATGGGAACAGATGAAAGAGATAGTGAAGTTCACAGGTCCGGCGATGGGGATGTGGATTT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TATGGGAACAGATGAAAGAGATAGTGAAGTTCACAGGTCCGGCGATGGGGATGTGGATTT 404
Query 417 GTGGACCGTTGATGAGTCTCATCGACACGGTCGTCATCGGCCAAGGAAGCTCCATCGAAC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GTGGACCGTTGATGAGTCTCATCGACACGGTCGTCATCGGCCAAGGAAGCTCCATCGAAC 464
Query 477 TCGCTGCTCTTGGACCGGGAACAGTACTATGCGACCACATGAGTTATGTCTTCATGTTCC 536
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 465 TCGCTGCTCTTGGACCCGGAACAGTACTATGCGACCACATGAGTTACGTCTTCATGTTCC 524
Query 537 TCTCCGTGGCTACATCCAATATGGTTGCTACTTCTCTTGCCAAACAGGACAAGAAAGAAG 596
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 525 TCTCCGTGGCTACATCCAACATGGTCGCAACTTCTCTTGCCAAACAGGACAAGAAAGAAG 584
Query 597 CGCAACATCAAATCTCTGTTTTACTCTTTATTGGATTGGTTTGTGGACTAATGATGCTTC 656
| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 585 CACAACATCAAATCTCTGTCTTGCTCTTCGTTGGATTGGTTTGTGGACTAATGATGCTTC 644
Query 657 TGCTCACAAGATTATTCGGTCCTTGGGCTGTTACTGCTTTTACAAGGGGGAAGAACATTG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TGCTCACAAGATTATTCGGTCCTTGGGCTGTTACTGCTTTTACAAGGGGGAAGAACATTG 704
Query 717 AGATTGTCCCTGCAGCTAATA-AGTATATTCAGATTCGAGGCTTAGCGTGGCCGTTTATC 775
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 705 AGATTGTCCCTGCAGCTAATACA-TATATTCAGATTCGAGGCTTAGCGTGGCCGTTTATC 763
Query 776 CTTGTTGGATTGGTTGCTCAAAGTGCAAGTCTTGGAATGAAGAACTCATGGGGACCTCTT 835
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 764 CTTGTTGGATTGGTTGCTCAAAGCGCAAGTCTTGGAATGAAGAACTCATGGGGACCTCTT 823
Query 836 AAAGCATTAGCTGCAGCAACGATCATTAACGGTCTTGGCGATACAATCCTATGCTTGTTT 895
|| || |||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 824 AAGGCTTTAGCTGCAGCAACGATCATTAACGGTCTTGGTGATACAATCTTATGCTTGTTT 883
Query 896 CTTGGACAAGGTATCGCTGGAGCTGCTTGGGCAACAACTGCTTCACAGATTGTTTCGGCT 955
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 884 CTTGGGCAAGGTATCGCTGGAGCTGCTTGGGCAACAACTGCTTCTCAGATTGTTTCGGCT 943
Query 956 TATATGATGATGGATTCTCTGAACAAAGAAGGCTACAATGCTTACTCTTTTGCGATCCCT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TATATGATGATGGATTCTCTGAACAAAGAAGGCTACAATGCTTACTCTTTTGCGATCCCT 1003
Query 1016 TCACCGCAAGAACTATGGAAGATCTCTGCACTCGCTGCACCTGTTTTTATCTCCATTTTC 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1004 TCACCGCAAGAACTATGGAAGATCTCTGCACTCGCTGCACCTGTTTTTATCTCCATCTTC 1063
Query 1076 TCCAAGATTGCTTTCTACTCTTTCATAATTTACTGTGCTACTTCCATGGGAACTCACGTT 1135
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1064 TCCAAGATTGCTTTCTACTCTTTCATCATCTACTGTGCTACTTCCATGGGAACTCACGTT 1123
Query 1136 TTAGCCGCTCATCAGGTGATGGCTCAGACGTATAGGATGTGCAATGTATGGGGTGAGCCA 1195
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1124 TTAGCCGCTCATCAGGTGATGGCTCAGACGTACAGGATGTGCAACGTATGGGGTGAGCCA 1183
Query 1196 CTCTCTCAAACGGCTCAGTCATTTATGCCAGAGATGTTATATGGTGCGAACCGTAATCTT 1255
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1184 CTCTCTCAAACGGCTCAGTCCTTTATGCCAGAGATGTTATATGGTGCGAACCGTAACCTT 1243
Query 1256 CCCAAGGCTAGAACGTTGCTTAAGTCCCT-GATGATTATTGGAGCCACGCTTGGATTAGT 1314
|| |||||||||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct 1244 CCAAAGGCTAGAACGTTGCTTAAGTCCCTAG-TGATTATTGGAGCCACCCTTGGATTAGT 1302
Query 1315 CTTGGGAGTTATCGGAACAGCGGTTCCAGGCCTGTTTCCTGGTGTCTACACACATGATAA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 CTTGGGAGTTATCGGAACAGCGGTTCCAGGCCTGTTTCCTGGTGTCTACACACATGATAA 1362
Query 1375 AGTCATCATATCCGAGATGCATAGACTGCTTATACCTTTCTTCATGGCGTTGTCTGCATT 1434
||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1363 AGTCATCATATCCCAGATGCATAAATTGCTTATACCTTTCTTCATGGCGTTGTCTGCATT 1422
Query 1435 GCCCATGACAGTATCCCTCGAGGGTACATTGCTGGCGGGACGTGATCTCAAATTCGTCAG 1494
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1423 GCCTATGACAGTATCCCTCGAGGGTACATTGCTGGCGGGACGTGATCTCAAATTCGTCAG 1482
Query 1495 CTCAGTGATGAGTTCAAGCTTCATAATTGGTTGTCTCACACTAATGTTCGTGACAAGAAG 1554
||| |||||||||||||||||| | |||| |||||||||||||||||||||||| | ||
Sbjct 1483 CTCGGTGATGAGTTCAAGCTTCGTTCTTGGCTGTCTCACACTAATGTTCGTGACACGGAG 1542
Query 1555 TGGCTATGGTTTACTCGGCTGCTGGTTCGTTCTCGTCGGATTTCAATGGGGCCGGTTTGG 1614
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1543 TGGCTATGGTTTACTCGGCTGCTGGTTCGTTCTCGTTGGATTTCAATGGGGTCGGTTTGG 1602
Query 1615 TCTATATCTACGACGGCTTCTTTCGCCTGGAGGCATACTTAATTCAGATGGGCCGAGTCC 1674
||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 1603 TCTGTATCTACGACGGCTTCTTTCGCCTGGAGGCATACTTAATTCGGATGGGATGAGTCC 1662
Query 1675 ATACACGGTGGAGAAGATTAAATCCATTTAAGTCTCAGTTTGATGATCTCATTGATTATC 1734
||| |||| ||||||||| ||||||||||| |||||||| ||||||| ||||||||||||
Sbjct 1663 ATATACGGCGGAGAAGATCAAATCCATTTA-GTCTCAGTATGATGATTTCATTGATTATC 1721
Query 1735 TAA-GAGTTTGCCAACAAATGGCTAATTATGATATATCAGGCACCAATGTCAAGAAACGG 1793
||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |
Sbjct 1722 TAAAGAGTTTGCCAACAAATGGCTAATTATGATATATCAGGCACCAAAAA-AAGCAA-GT 1779
Query 1794 CTA-AT-T-ATTGTCAACTT-TTTTCTTTGGTCAGAGGCTCAATGTAAATTTAAAGCATA 1849
| | || | ||||||||||| |||| ||||||||||||||||||| |||| |||||||||
Sbjct 1780 C-ACATCTTATTGTCAACTTCTTTT-TTTGGTCAGAGGCTCAATGCAAATCTAAAGCATA 1837
Query 1850 ATAGACAAATAATATATACAAGTGTGGTTAGTTCAATCAGTTAG-AAAAGATCAAATTCA 1908
||||||||||||||| || | ||||||||||||||||||||||| |||| ||||||||||
Sbjct 1838 ATAGACAAATAATATTTA-A-GTGTGGTTAGTTCAATCAGTTAGGAAAA-ATCAAATTCA 1894
Query 1909 CTGATAGAT-CGACTCTT-CACAAAGCTTCCCAGCAAAGGAGAATTTGGCATAAAAGATC 1966
||||||| | | | | | | |||| | || ||||||||||| | | |
Sbjct 1895 CTGATAGGTTCTTTTGTGACTCGTCTCTTC--ATCAGAGGAGAATTTG--A-A-----T- 1943
Query 1967 AATGTGATTGTATTTCTAATTGTATTATTATTGGAGAAATGAAAATGCATCACTACTCTT 2026
|||||||| |||||||||||||| || | ||||||||||||||||||||||||||
Sbjct 1944 ---GTGATTGTTTTTCTAATTGTATTCTT---GAAGAAATGAAAATGCATCACTACTCTT 1997
Query 2027 GAGAT 2031
|||||
Sbjct 1998 GAGAT 2002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76370941225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5