BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39040.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490673 jgi|Araly1|490673|fgenesh2_kg.7__106__AT4G39040.1 1317 0.0
Ahg899400 jgi|Araly1|899400|Al_scaffold_0004_50 243 3e-63
Ahg490671 jgi|Araly1|490671|fgenesh2_kg.7__104__AT4G39030.1 84.2 2e-15
> Ahg490673 jgi|Araly1|490673|fgenesh2_kg.7__106__AT4G39040.1
Length=963
Score = 1317 bits (713), Expect = 0.0
Identities = 909/997 (91%), Gaps = 39/997 (4%)
Strand=Plus/Plus
Query 10 GTGTTTGGTGCAATGGAGAGAGTGACAGCGTCAGCGTCTTGTTCATCGACTCACCTTATC 69
||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct 1 GTGTTTGGTGCAATGGAGAGAGTGACAGCAACATCGTCTTCTTCATCGACTCACCTTATC 60
Query 70 CACAA---TCTTCTCCGACATCCCAAACCACCGTC-TCCGGTCTGTCTCTTCCTCAGACC 125
||||| ||||||||||||||||||| | ||||| | |||||||||||||||| |||||
Sbjct 61 CACAATCTTCTTCTCCGACATCCCAAAGCGCCGTCGT-CGGTCTGTCTCTTCCTTAGACC 119
Query 126 CTTTTGCTTCTCCGCTTCAGTCTCTCAATCCAATCACCGTAACAAGCCTCGATTTCAATC 185
||||||||||||||||||| ||||||||||||||| |||||||| ||| || | |
Sbjct 120 CTTTTGCTTCTCCGCTTCAATCTCTCAATCCAATCTCCGTAACACGCCCCG----C---C 172
Query 186 ATTCTCCTCAAAGCCGCTTCCTTGTCATTCTGCTTCACTCGTAGTGAAATCCTTCTCTTC 245
||| |||||||||||||| | || |||| ||||||||||||||||||||||||||||
Sbjct 173 -TTC-AATCAAAGCCGCTTCCATCTCGTTCTACTTCACTCGTAGTGAAATCCTTCTCTTC 230
Query 246 CATCGATGAACCAGATCTCGAAGAAGAcgaagagagcgaggatgaagatttcagcgcaga 305
|||||||||||||||||||||||| ||||||||||||||||||||||| | | |
Sbjct 231 CATCGATGAACCAGATCTCGAAGAGGACGAAGAGAGCGAGGATGAAGA-AT-A---C--- 282
Query 306 agaatacgaatacgaagacgaagaagaagaagaTGAGCAGGACAGTGGAGTGGTGGTTTC 365
||||||| | | |||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 283 -GAATACG-A-A-GAAGGCGAAGAAGAAGAAGATGAGCTGGACAGTGGAGTGGTGGTTGC 338
Query 366 CGAGAGAGGAATTGAAGATTCGGAAGCATCTGAGGAGGTTTCGGAAATAGGAGATAAAGA 425
|| |||||||||||||||||||||||||||||| || | || |||||||||||||
Sbjct 339 CGTGAGAGGAATTGAAGATTCGGAAGCATCTGA-GA----T-GGGTTTAGGAGATAAAGA 392
Query 426 GGAGAAAACAGAGAATACGAAGAAGAAGAAGAGTCGAGGCTCTGCTTTGAAACTGTCGAT 485
||||||||||||| | | | |||||||||||||||||||||||||||||| ||||||||
Sbjct 393 GGAGAAAACAGAG-A-A-GGCGAAGAAGAAGAGTCGAGGCTCTGCTTTGAAGCTGTCGAT 449
Query 486 AAAGGAGAAAAAGGAATTGGCTTCTTACGCGCATAGTTTGGGTGATAAATTGAAATGTCA 545
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 450 AAAGGAGAAGAAGGAATTGGCTTCTTACGCACATAGTTTGGGTGATAAATTGAAATGTCA 509
Query 546 ACTCGTCGGCAAATCTGGTGTTACTGATTCTGTCGTTTTCTCATTCCTCGAGACTCTCGA 605
|||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 510 ACTCGTCGGCAAATCTGGCGTTACTGATTCAGTCGTTTTCTCCTTCCTCGAGACCCTCGA 569
Query 606 GAAGAACGAGCTCTTAAAGGTGAAAATACGCAAGACATCGCCCGATGAGCTAGAGGATGC 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GAAGAACGAGCTCTTAAAGGTGAAAATACGCAAGACATCGCCCGATGAGCTAGAGGATGC 629
Query 666 GGTGCAGCATTTGGAGGAAGCGACTGGTTCCGTAGCAGTAGGGCAAATAGGGCGGACTGT 725
||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 630 GGTTCAGCATTTGGAGGAAGCGACTGGTTCGGTAGCAGTAGGGCAAATCGGGCGGACTGT 689
Query 726 GATATTGTATAGGCCCAGTCCCACCAAAATGAAAGCAGAGGCGAAGAAGAAGGAAGTTGA 785
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 GATATTGTATCGGCCTAGTCCCACCAAAATGAAAGCAGAGGCGAAGAAGAAGGAAGTTGA 749
Query 786 GAGAATGTCAATTACTAGAAGGCAGAAATACGCAAACACTAGACCCACTAAACCCTTTAG 845
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 750 GAGAATGTCAATTACTAGAAGGCACAAATACACAAACACTAGACCCACTAAACCCTTTAG 809
Query 846 AAGAGAGTATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGTAGAGTTCCAAC 905
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 810 AAGAGAATATTCAGAGAGACCTGATGGACGTGGACGCAGAGGCGGAAGTAGAGTTCCAAC 869
Query 906 GGCTTAAATTTTTACCCG-TTTGTTTGTTTTCATCTCAAGAGTAGTGATGCATTTTCATT 964
||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |
Sbjct 870 GGCTTAAATCTTTACCCGGTTTGTTTGTTATCATCTCAAGAGTAGTGATGCATTTTCAGT 929
Query 965 TCTCCAATAATAATACAATTAGAAATACAATCACATT 1001
||| ||| |||| |||||||||| |||||||||||
Sbjct 930 TCTTCAAGAATA---CAATTAGAAAAACAATCACATT 963
> Ahg899400 jgi|Araly1|899400|Al_scaffold_0004_50
Length=351
Score = 243 bits (131), Expect = 3e-63
Identities = 225/271 (83%), Gaps = 4/271 (1%)
Strand=Plus/Plus
Query 505 GCTTCTTACGCGCATAGTTTGGGTGATAAATTGAAATGTCAACTCGTCGGCAAATCTGGT 564
||||||||||| |||||||||||||| ||| |||||| ||| ||||| ||||| |||||
Sbjct 64 GCTTCTTACGCACATAGTTTGGGTGACAAACTGAAATCTCAGCTCGTAGGCAAGTCTGGC 123
Query 565 GTTACTGATTCTGTCGTTTTCTCATTCCTCGAGACTCTCGAGAAGAACGAGCTCTTAAAG 624
||||| ||||| || || || || ||| | ||||| || |||||||||||||||||||||
Sbjct 124 GTTACGGATTCAGTAGTCTTGTCCTTCATAGAGACGCTGGAGAAGAACGAGCTCTTAAAG 183
Query 625 GTGAAAATACGCAAGACATCGCCC-G-ATGAGCTAGAGGATGCGGTGCAGCATTTGGAGG 682
|||||||||| || ||||| |||| | | ||| ||||||| | | | |||||||||||
Sbjct 184 GTGAAAATACACAGGACAT-GCCCTGGA-GAGTTAGAGGACATGATTCTGCATTTGGAGG 241
Query 683 AAGCGACTGGTTCCGTAGCAGTAGGGCAAATAGGGCGGACTGTGATATTGTATAGGCCCA 742
|||| |||||||| ||| |||| |||||||| | ||||||||||||| | ||| | || |
Sbjct 242 AAGCCACTGGTTCAGTATCAGTCGGGCAAATTGCGCGGACTGTGATACTCTATCGTCCTA 301
Query 743 GTCCCACCAAAATGAAAGCAGAGGCGAAGAA 773
||||||||||| ||||||| || | ||||||
Sbjct 302 GTCCCACCAAATTGAAAGCCGACGAGAAGAA 332
> Ahg490671 jgi|Araly1|490671|fgenesh2_kg.7__104__AT4G39030.1
Length=2002
Score = 84.2 bits (45), Expect = 2e-15
Identities = 59/65 (91%), Gaps = 3/65 (5%)
Strand=Plus/Minus
Query 937 ATCTCAAGAGTAGTGATGCATTTTCATTTCTCCAATAATAATACAATTAGAAATACAATC 996
||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||||
Sbjct 2002 ATCTCAAGAGTAGTGATGCATTTTCATTTCTTCAAGAATA---CAATTAGAAAAACAATC 1946
Query 997 ACATT 1001
|||||
Sbjct 1945 ACATT 1941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5