BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39050.1
Length=3698
Score E
Sequences producing significant alignments: (Bits) Value
Ahg327857 jgi|Araly1|327857|fgenesh1_pm.C_scaffold_7000084 5413 0.0
Ahg481003 jgi|Araly1|481003|fgenesh2_kg.4__63__AT2G21380.1 2311 0.0
Ahg952455 jgi|Araly1|952455|scaffold_7400001.1 300 6e-80
Ahg949340 jgi|Araly1|949340|scaffold_801227.1 174 4e-42
> Ahg327857 jgi|Araly1|327857|fgenesh1_pm.C_scaffold_7000084
Length=3168
Score = 5413 bits (2931), Expect = 0.0
Identities = 3090/3169 (98%), Gaps = 2/3169 (0%)
Strand=Plus/Plus
Query 328 ATGGCTTCATCCTCATCGAGAACTAGAAGCAGTAGACCTCCAAGTCCCGCTTCTTCCACT 387
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCATCCTCATCGAGAAATAGAAGCAGTAGACCTCCAAGTCCCGCTTCTTCCACT 60
Query 388 TCTTCTTCTCATCTCAGCAACCGTCTCATTCCTCGTTCTAACTCTACCTCTGCTTCCTCA 447
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TCTTCTTCTCATCTTAGCAACCGTCTCATTCCTCGTTCTTGCTCTACCTCTGCTTCCTCA 120
Query 448 TTGATTACCTCCGCCGCCGGAATCGCCTCCCGATCTATGACGCCTAGTCGCACCTTCTCC 507
||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TTGATCAACTCCGCCGCCGGAATCGGCTCCCGATCTATGACGCCTAGTCGCACCTTCTCC 180
Query 508 GACTCGGGCCTTATCGGCTCCGGCAGCTTTGGAATTGGATCGCCTGTTCCCTACCCGTCA 567
|||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 181 GACTCGGGGCTTATCGGCTCCGGGAGCTTTGGAATTGGATCGCCTGTACCTTACCCGTCA 240
Query 568 GAGGAGCTTCTCGGTGACCCTATGGACGATACTATTAGCTCTGAGCGGGATAGTATCTCC 627
|| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 241 GAAGAGCTTCTCGGTGACCCTATGGAGGAGACTATTAGCTCTGAGCGGGATAGTATTTCC 300
Query 628 GTCACCGTTCGTTTTCGTCCGTTGAGTGATAGAGAGTATCAAAGAGGAGATGAAGTTGCT 687
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTCACCGTTCGTTTTCGTCCATTGAGTGATAGAGAGTATCAAAGAGGAGATGAAGTTGCT 360
Query 688 TGGTACCCTGATGGTGATACATTGGTTAGGCACGAGTATAACCCACTCACAGCTTACGCA 747
|||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||
Sbjct 361 TGGTACCCTGATGGTGATACATTGGTCAGGCACGAGTATAATCCACTCACTGCTTACGCA 420
Query 748 TTTGATAAAGTTTTTGGACCACAGGCAACTACTATTGACGTTTATGATGTAGCTGCGAGA 807
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 421 TTCGATAAAGTTTTTGGACCACAAGCAACTACTATTGACGTTTATGATGTAGCTGCAAGA 480
Query 808 CCAGTAGTCAAGGCAGCAATGGAAGGTGTTAACGGAACCGTTTTTGCTTACGGTGTTACT 867
|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 481 CCAGTAGTCAAGGCTGCAATGGAAGGTGTTAACGGAACCGTTTTTGCTTATGGTGTGACA 540
Query 868 AGCAGTGGAAAGACACATACAATGCATGGTGATCAAGAATCTCCTGGGATCATACCGCTA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGCAGTGGAAAGACACATACAATGCATGGTGATCAAGAATCTCCTGGGATCATACCGCTA 600
Query 928 GCAATAAAAGACGTGTTCAGTATCATCCAGGATACTCCAGGAAGGGAGTTCCTGCTCCGT 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GCAATAAAAGACGTGTTCAGTATCATCCAGGATACTCCAGGAAGGGAGTTCCTGCTCCGT 660
Query 988 GTTTCATATCTTGAAATATACAATGAGGTGATAAATGATTTACTGGATCCAACAGGCCAA 1047
||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 661 GTTTCATATCTCGAAATATACAACGAGGTGATAAATGATTTACTGGATCCTACGGGCCAA 720
Query 1048 AACTTACGTGTTAGAGAGGATTCCCAGGGCACTTATGTTGAGGGTATCAAGGAAGAAGTT 1107
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AATTTACGTGTTAGAGAGGATTCCCAGGGCACTTATGTTGAGGGTATCAAGGAAGAAGTT 780
Query 1108 GTTTTGTCTCCTGGCCATGCACTATCATTCATTGCAGCTGGGGAAGAACATCGTCATGTT 1167
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTTTGTCTCCTGGCCATGCATTATCATTCATTGCAGCTGGGGAAGAACATCGTCATGTT 840
Query 1168 GGTTCAAATAATTTCAATTTGTTGAGCAGCAGAAGTCACACTATATTTACACTGATGGTT 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GGTTCAAATAATTTCAATTTGTTGAGCAGCAGAAGTCACACTATATTTACACTGATGGTT 900
Query 1228 GAAAGTAGTGCTACTGGAGATGAATATGATGGAGTTATCTTTTCTCAACTCAATTTGATT 1287
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 901 GAAAGTAGTGCTACTGGAGATGAATATGATGGAGTTATATTTTCTCAACTCAATTTGATT 960
Query 1288 GACTTAGCTGGATCTGAGAGTTCGAAAACTGAAACAACTGGATTGAGGAGGAAGGAGGGT 1347
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 961 GACTTAGCTGGATCTGAGAGTTCCAAAACTGAAACAACTGGATTGAGGAGGAAGGAGGGT 1020
Query 1348 TCATACATCAACAAGAGTCTTCTAACTCTTGGAACTGTGATTGGAAAACTTAGTGAGGGT 1407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCATACATCAACAAGAGTCTTCTAACTCTTGGAACTGTGATTGGAAAACTTAGTGAGGGT 1080
Query 1408 AAGGCAACTCACATTCCATATCGTGACTCTAAGCTAACTCGTCTTCTGCAATCTTCATTA 1467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AAGGCAACTCACATTCCATATCGTGACTCTAAGCTAACTCGTCTTCTGCAATCTTCATTA 1140
Query 1468 AGTGGTCATGGACATGTGTCGCTCATATGTACAATTACTCCTGCGTCCAGCAGTAGTGAG 1527
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1141 AGTGGTCATGGGCATGTCTCGCTCATATGTACAATTACTCCTGCGTCGAGCAGTAGTGAG 1200
Query 1528 GAAACTCATAACACATTGAAGTTTGCCAGCAGGGCAAAGAGTATAGAAATATATGCTTCA 1587
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GAAACTCATAATACATTGAAGTTTGCCAGCAGGGCAAAGAGTATAGAAATATATGCTTCA 1260
Query 1588 CGCAATCAGATTATAGATGAGAAGTCATTAATTAAGAAATATCAAAGAGAAATCTCAACC 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CGCAATCAGATTATAGATGAGAAGTCATTAATTAAGAAATATCAAAGAGAAATCTCAACC 1320
Query 1648 CTCAAACTAGAACTTGATCAGCTTAGAAGGGGTATGCTTGTTGGTGTCAGTCATGAAGAG 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 CTCAAACTAGAACTTGATCAGCTTAGAAGGGGTATGCTTGTTGGTGTCAGTCATGAAGAG 1380
Query 1708 TTAATGAGCTTAAAGCAACAGTTAGAAGAAGGGCAAGTGAAAATGCAATCAAGATTGGAG 1767
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1381 TTAATGAGCTTAAAGCAACAGTTAGAAGAAGGTCAAGTGAAAATGCAATCAAGATTGGAG 1440
Query 1768 GAAGAAGAAGAAGCCAAAGCAGCTCTAATGAGCAGAATCCAAAAGCTTACCAAGCTCATA 1827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GAAGAAGAAGAAGCCAAAGCAGCTCTAATGAGCAGAATCCAAAAGCTTACCAAGCTCATA 1500
Query 1828 CTAGTCTCTACCAAGAATTCTATTCCTGGATATTCGGGTGACATACCTACTCATCAGCGC 1887
|| ||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||
Sbjct 1501 CTCGTCTCTACCAAGAATTCTATTCCTGGATATTTGGGTGATATACCTACTCATCAACGC 1560
Query 1888 AGTCTCTCTGCGGGTAAAGATGATAAATTCGATTCTCTACTGTTGGAAAGTGATAATCTG 1947
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1561 AGTCTCTCTGCTGGTAAAGATGATAAATTCGATTCTCTACTGTTGGAAAGTGATCATCTG 1620
Query 1948 GGATCTCCATCTTCGACCTTAGCTCTTCTATCAGAAGGTTCTTTAGGTTTTAACCACAGG 2007
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1621 GGATCTCCATCTTCGACCTTGGCTCTTGTATCAGAAGGTTCTTTAGGTTTTAACCACAGG 1680
Query 2008 CGATCTTCTAGCAAGTTGAATGACGAAAACTCGCCGGGTGCAGAATTTACTCAAGGTGTC 2067
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1681 CGATCTTCTAGCAAGTTGAATGACGAAAACTCACCGGGTGCAGAATTTACTCAAGGTGTC 1740
Query 2068 ATGACGCCGGACGAAATCGACCTTCTGGTTGAACAAGTTAAGATGCTTGCTGGTGAGATA 2127
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 ATGACGCCAGATGAAATCGACCTTCTGGTTGAACAAGTTAAGATGCTTGCTGGTGAGATA 1800
Query 2128 GCTTTCAGTACGAGCACACTAAAGCGTTTGGTGGATCAGTCCGTAAATGATCCGGAAAAC 2187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 GCTTTCAGTACGAGCACACTAAAGCGTTTGGTGGATCAGTCCGTAAATGATCCGGAAAAC 1860
Query 2188 TCACAAACTCAGATACAGAATCTGGAACGCGAGATTCACGAAAAGCAAAGGCAAATGAGA 2247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 TCACAAACTCAGATACAGAATCTGGAACGCGAGATTCACGAAAAGCAAAGGCAAATGAGA 1920
Query 2248 GGCTTGGAACAGCTCATAATTGAGAGTGGTGAAGCTTCCATTGCCAACGCATCATTAGTT 2307
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1921 GCCTTGGAACAGCTCATAATTGAGAGTGGTGAAGCTTCAATTGCCAACGCATCATTAGTT 1980
Query 2308 GAGATGCAACAGAAAGTTATGAGTCTGATGACCCAGTGCAATGAGAAGAGCTTTGAGCTG 2367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1981 GAGATGCAACAGAAAGTTATGAGTCTGATGACCCAGTGCAATGAGAAGAGCTTTGAGCTG 2040
Query 2368 GAGATCAAATCAGCTGATAATTGCATTCTCCAAGAACAACTACAGGAAAAGTGTACCGAG 2427
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2041 GAGATCAAATCAGCTGATAATTGCATTCTCCAAGAACAACTACAGAAAAAGTGTACCGAG 2100
Query 2428 AACAAAGAACTACATGAAAAGGTGAATCTTCTAGAGCAACGCTTGAATGCAGTATCTAGT 2487
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2101 AACAAAGAACTACATGAAAAGGTGAATCTTCTAGAGCAACGCTTGAATGCAGTATCTAGT 2160
Query 2488 GAGAAATCCTCTCCATCTTGTTCCAATAAAGCGGTATCTGGAGAGTATGCAGACGAACTA 2547
||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2161 GAGAAATCCTCACCATCTTGTTCCGATAAAGCGGTATCTGGAGAGTATGCAGACGAACTA 2220
Query 2548 AAAAAGAAAATACAATCGCAGGAAATTGAGAACGAAGAGTTGAAGCTAGAACACGTGCAA 2607
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2221 AAAAAGAAAATACAATCACAGGAAATTGAGAACGAAGAGTTGAAGCTAGAACATGTGCAA 2280
Query 2608 AT-CGTGGAAGAGAACAGTGGGTTACGAGTACAAAATCAAAAACTAGCTGAAGAAGCTTC 2666
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2281 ATTC-TGGAAGAGAACAGTGGGTTACGAGTACAAAATCAAAAACTAGCTGAAGAAGCTTC 2339
Query 2667 ATATGCTAAGGAGTTAGCCTCTGCGGCTGCTGTTGAGCTGAAAAATCTTGCTAGCGAAGT 2726
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2340 ATATGCTAAGGAGTTAGCCTCTGCTGCTGCTGTTGAGCTGAAAAATCTTGCTAGCGAAGT 2399
Query 2727 AACAAAACTCTCACTACAAAACACAAAGCTAGAAAAAGAATTAGCAGCTGCAAGAGACTT 2786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 AACAAAACTCTCACTACAAAACACAAAGCTAGAAAAAGAATTAGCAGCTGCAAGAGACTT 2459
Query 2787 GGCTCAAACGCGTAACCCCATGAACGGAGTTAATCGCAAGTATAACGATGGGGCAAGGTC 2846
||||||||||||||| | |||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 2460 GGCTCAAACGCGTAATCTCATGAATGGAGTAAATCGCAAGTATAATGATGGGGCAAGGTC 2519
Query 2847 AGGAAGAAAGGGAAGGATTTCCTCAAGTAGGTCAAGTGGAGATGAGTTTGACGCATGGAA 2906
||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 2520 AGGAAGAAAGGCAAGGATTTCTTCAAGTAGGTCAAGTGGAGATGAGTTTGACGCCTGGAA 2579
Query 2907 TCTAGACCCAGAAGATCTTAAAATGGAGTTGCAAGTAAGGAAACAACGAGAAGTGGCTCT 2966
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 2580 TCTAGACCCAGAAGATCTTAAAATGGAGTTGCAGGTAAGGAAACAGCGAGAGGTGGCTCT 2639
Query 2967 TGAGTCTGCATTGGCAGAGAAAGAGTTTATAGAAGATGAATACAGGAAAAAAGCAGAAGA 3026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2640 TGAGTCTGCATTGGCAGAGAAAGAGTTTATAGAAGATGAATACAGGAAAAAAGCAGAAGA 2699
Query 3027 GGCAAAGCGAAGAGAGGAAGCTTTAGAAAACGATTTGGCAAACATGTGGGTACTTGTTGC 3086
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2700 GGCAAAGAGAAGAGAGGAAGCTTTAGAAAACGATCTGGCAAACATGTGGGTACTTGTTGC 2759
Query 3087 CAAGTTGAAGAAAGACAATGGTGCATTGCCTGAACCCAATGGCACTGACCCTGGAAGAGA 3146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2760 CAAGTTGAAGAAAGACAATGGTGCATTGCCTGAACCCAATGGCACTGACCCTGGAAGAGA 2819
Query 3147 ATTAGAGAAGAGTCAAAGCCATGCGGTTCTGAAAGAGAGACAAGTCTCGAGTGCACCGAG 3206
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2820 ATTAGAGAAGAGTCAAACCCATGCGGTTCTGAAAGAGAGACAAGTCTCGAGTGCACCGAG 2879
Query 3207 ACAACCTGAAGTAGTAGTAGTAGCTAAAACCGAAGAGACACCAAAAGAGGAACCACTCGT 3266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2880 ACAACCTGAAGTAGTAGTAGTAGCTAAAACCGAAGAGACACCAAAAGAGGAACCACTCGT 2939
Query 3267 TGCTCGTCTCAAGGCACGAATGCAAGAAATGAAAGAGAAAGAGATGAAATCGCAAGCGAA 3326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2940 TGCTCGTCTCAAGGCACGAATGCAAGAAATGAAAGAGAAAGAGATGAAATCGCAAGCAAA 2999
Query 3327 TGGAGACGCAAACTCTCACATTTGTAAAGTATGTTTCGAATCTCCCACTGCGGCAATTCT 3386
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 3000 TGGAGACGCAAACTCTCACATTTGTAAAGTATGTTTTGAATCTCCCACTGCAGCAATTCT 3059
Query 3387 ACTCCCTTGCCGTCATTTCTGCTTATGTAAATCCTGTTCCCTTGCTTGCTCTGAATGCCC 3446
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 3060 ACTCCCTTGCCGTCATTTCTGCTTATGTAAATCATGTTCCCTTGCTTGCTCTGAATGCCC 3119
Query 3447 AATTTGCCGCACAAAGATCTCTGATCGGCTCTTTGCGTTTCCGTCTTAA 3495
|||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3120 AATTTGCCGCACAAAGATCTCTGATCGGCTCTTTGCATTTCCGTCTTAA 3168
> Ahg481003 jgi|Araly1|481003|fgenesh2_kg.4__63__AT2G21380.1
Length=3578
Score = 2311 bits (1251), Expect = 0.0
Identities = 1914/2224 (86%), Gaps = 85/2224 (4%)
Strand=Plus/Plus
Query 598 ACTATTAGCTCTGAGCGGGATAGTATCTCCGTCACCGTTCGTTTTCGTCCGTTGAGTGAT 657
||||| | ||||||||| ||||| ||||||||||||||||| ||||||||| |||||||
Sbjct 399 ACTATCACCTCTGAGCGAGATAGCATCTCCGTCACCGTTCGATTTCGTCCGATGAGTGAG 458
Query 658 AGAGAGTATCAAAGAGGAGATGAAG-TTGCTTGGTACCCTGATG-GTGAT-ACATTGGTT 714
|||||||||||||| ||||| | || ||| |||||| ||||| | | ||| | | ||||
Sbjct 459 AGAGAGTATCAAAGGGGAGACG-AGATTGTTTGGTATCCTGACGCG-GATAAGA-TGGTC 515
Query 715 AGGCACGAGTATAA-CCCACTCACAGCTTACGCATTTGATAAAGTTTTTGGACCACAGGC 773
||| | || || || ||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 516 AGGAATGAATACAATCCC-CTCACAGCTTACGCATTTGATAAAGTTTTTGGACCACAATC 574
Query 774 AACTACTATTGACGTTTATGATGTAGCTGCGAGACCAGTAGTCAAGGCAGCAATGGAAGG 833
||| ||| || || ||||| |||||||| | ||| ||||||||||| || ||||||||
Sbjct 575 AACAACTCCAGAAGTATATGACGTAGCTGCTAAACCTGTAGTCAAGGCTGCTATGGAAGG 634
Query 834 TGTTAACGGAACCGTTTTTGCTTACGGTGTTACTAGCAGTGGAAAGACACATACAATGCA 893
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 635 TGTTAACGGAACCGTTTTTGCTTATGGTGTTACAAGCAGTGGAAAGACACATACAATGCA 694
Query 894 TGGTGATCAAGAA-TCTCCTGGGATCATACCGCTAGCAATAAAAGACGTGTTCAGTATCA 952
|||||||| | || | |||||| |||||||| |||||||||||||||||||||||||||
Sbjct 695 TGGTGATC-ACAATTTTCCTGGAATCATACCATTAGCAATAAAAGACGTGTTCAGTATCA 753
Query 953 TCCAGGATACTC-CAGGAAGGGAGTTCCTGCTCCGTGTTTCATATCTTGAAATATACAAT 1011
||||||| || | | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 754 TCCAGGAAAC-CACTGGAAGAGAGTTCCTGCTCCGTGTTTCATATCTTGAAATATACAAT 812
Query 1012 GAGGTGATAAATGATTTACTGGATCCAACAGGCCAAAACTTACGTGTTAGAGAGGATTCC 1071
|||||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct 813 GAGGTGATAAATGACTTACTGGATCCAACAGGGCAAAATTTACGAATTAGAGAGGATTCC 872
Query 1072 CAGGGCACTTATGTTGAGGGTATCAAGGAAGAAGTTGTTTTGTCTCCTGGCCATGCACTA 1131
||||||||||| ||||||||||||||||||||||| || |||||||| |||||||| |||
Sbjct 873 CAGGGCACTTACGTTGAGGGTATCAAGGAAGAAGTCGTATTGTCTCCAGGCCATGCGCTA 932
Query 1132 TCATTCATTGCAGCTGGGGAAGAACATCGTCATGTTGGTTCAAATAATTTCAATTTGTTG 1191
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 933 TCTTTCATTGCAGCTGGGGAAGAACATCGTCATGTTGGTTCAAATAATTTCAACCTGATG 992
Query 1192 AGCAGCAGAAGTCACACTATATTTACACTGATGGTTGAAAGTAGTGCT-ACTGGAGATGA 1250
||||||||||||||||| ||||||||||||||| |||||||||||||| | |||||| |
Sbjct 993 AGCAGCAGAAGTCACACAATATTTACACTGATGATTGAAAGTAGTGCTCA-TGGAGACCA 1051
Query 1251 ATATGATGGAGTTATCTTTTCTCAACTCAATTTGATTGACTTAGCTGGATCTGAGAGTTC 1310
||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1052 ATATGATGGAGTTATTTTTTCTCAGCTAAATTTGATTGACTTAGCTGGATCCGAGAGTTC 1111
Query 1311 GAAAACTGAAACAACTGGATTGAGGAGGAAGGAGGGTTCATACATCAACAAGAGTCTTCT 1370
|||||||| ||||| ||| |||||||||| |||||| ||||||||||||||||||||||
Sbjct 1112 CAAAACTGAGACAACGGGACTGAGGAGGAAAGAGGGTGCATACATCAACAAGAGTCTTCT 1171
Query 1371 AACTCTTGGAACTGTGATTGGAAAACTTAGTGAGGGTAAGGCAACTCACATTCCATATCG 1430
|||||||||||||| ||||||||||| | |||||| ||| ||||||| | |||| |||
Sbjct 1172 GACTCTTGGAACTGTAATTGGAAAACTGACTGAGGGCAAGACAACTCATGTCCCATTTCG 1231
Query 1431 TGACTCTAAGCTAACTCGTCTTCTGCAATCTTCATTAAGTGGTCATGGACATGTGTCGCT 1490
||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| |||||
Sbjct 1232 GGACTCTAAGCTAACTCGTCTTCTGCAATCTTCACTGAGTGGGCATGGGCATGTATCGCT 1291
Query 1491 CATATGTACAATTACTCCTGCGTCCAGCAGTAGTGAGGAAACTCATAACACATTGAAGTT 1550
|||||||||| ||||||||||||| ||||||| |||||||||||||| || ||||||||
Sbjct 1292 CATATGTACAGTTACTCCTGCGTCAAGCAGTACAGAGGAAACTCATAATACTTTGAAGTT 1351
Query 1551 TGCCAGCAGGGCAAAGAGTATAGAAATATA-TGCTTCACGCAATCAGATTATAGATGAGA 1609
|||||||||||||||||| || ||||| || ||| || |||||| |||| ||||||||||
Sbjct 1352 TGCCAGCAGGGCAAAGAGAATTGAAAT-TAATGCCTCGCGCAATAAGATCATAGATGAGA 1410
Query 1610 AGTCATTAATTAAGAAATATCA-AAGAGAAATCTCAACCCTCA-A-ACTAGAACTTGATC 1666
||||||| |||||||||||||| || ||||||||| ||||||| | || ||||||||||
Sbjct 1411 AGTCATTGATTAAGAAATATCAGAA-AGAAATCTCGACCCTCAGAGAC--GAACTTGATC 1467
Query 1667 AGCTTAGAAGGGGTATGCTTGTTGGTGTCAGTCATGAAGAGTTAATGAGCTTAAAGCAAC 1726
|||| ||||||||| ||||||||||||||||||| ||||||||| ||||| |||||||||
Sbjct 1468 AGCTAAGAAGGGGTGTGCTTGTTGGTGTCAGTCACGAAGAGTTATTGAGCCTAAAGCAAC 1527
Query 1727 AGTTAGAAGAAGGGCAAGTGAAAATGCAATCAAGATTGGAGGAAGAAGAAGAAGCCAAAG 1786
|| || ||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1528 AGCTACAAGAAGGTCAAGTGAAGATGCAATCAAGATTGGAGGAAGAAGAAGAAGCTAAAG 1587
Query 1787 CAGCTCTAATGAGCAGAATCCAAAAGCTTACCAAGCTCATACTAGTCTCTACCAAGAATT 1846
||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1588 CAGCTCTAATGAGTAGAATCCAAAAGCTTACAAAGCTCATACTCGTCTCTACCAAGAATT 1647
Query 1847 CTATTCCTGGATATTCGGGTGACATACCTA-CTCATCAGCGCAGTC-TCTCTGCGGGTAA 1904
||||||||||||||| ||||| | ||| | ||||||||||||| | | ||||| |||||
Sbjct 1648 CTATTCCTGGATATTTAGGTGATACACC-AGCTCATCAGCGCAG-CATTTCTGCTGGTAA 1705
Query 1905 AGATGATAAATTCGATTCTCTACTGTTGGAAAGTGATAATCTGGGATCTCCATCTTCGAC 1964
||||||||| || || ||||| || ||||| ||||||||||||| |||||||||||| ||
Sbjct 1706 AGATGATAAGTTAGACTCTCTGCTCTTGGATAGTGATAATCTGGCATCTCCATCTTCAAC 1765
Query 1965 -CTTAGCTCTTCTATCAGAAGGTTCTTTAGGTTTTAACCACAGGCGATCTTCTAGCAAGT 2023
|| | ||| ||| || || | | || | | || ||||| |||||||
Sbjct 1766 TCT--G-TCT-CTAGCATCAGATGCG--AG-----A-C----GG---TCTTCCAGCAAGT 1806
Query 2024 TGAATGACGAAAACTCGCCGG--G-T---G---CAGAATTTACTCAAGGTGTCATGACGC 2074
| || || |||||||| |||| | | | ||||||| |||||||| || |||| |
Sbjct 1807 TTAAGGATGAAAACTCTCCGGTTGGTTCTGGGGCAGAATTAACTCAAGGCGTTATGAATC 1866
Query 2075 CGGACGAAATCGACCTTCTGGTTGAACAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCA 2134
| || ||||| || || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 CAGATGAAATGGATCTCCTCGTTGAACAAGTTAAGATGCTTGCTGGTGAGATAGCTTTCA 1926
Query 2135 GTACGAGCACACTAAAGCGTTTGGTGGATCAGTCCGTAAATGATCCGGAAAACTC-ACAA 2193
| || ||||| || ||||||||||||||||||||| |||||||||| |||||||| | ||
Sbjct 1927 GCACAAGCACTCTTAAGCGTTTGGTGGATCAGTCCATAAATGATCCTGAAAACTCGA-AA 1985
Query 2194 ACTC-AGATACAGAATCTGGAACGCGAGATTCACGAAAAGCAAAGGCAAATGAGAGGCTT 2252
| || | || |||||||| ||||| |||||||| ||||||||||| ||||||||| |||
Sbjct 1986 A-TCCAAATCCAGAATCTAGAACGAGAGATTCAAGAAAAGCAAAGACAAATGAGATCCTT 2044
Query 2253 GGAACAGCTCATAATTGAGAGTGGTGAAGCTTCCATTGCCAACGCATCATT-AGTTGAGA 2311
|||||||| |||| |||||||||||||||||| ||||| || ||||||| | ||||||
Sbjct 2045 GGAACAGCGAATAACTGAGAGTGGTGAAGCTTCAATTGCTAATGCATCATCGA-TTGAGA 2103
Query 2312 TGCAACAGAAAGTTATGAG-TCTGATGACCCAGTGCAATGAGAAGAGCTTTGAGCTGGAG 2370
||||||||||||||||||| | ||||||| || |||||||||||||||||||||||||||
Sbjct 2104 TGCAACAGAAAGTTATGAGAT-TGATGACACAATGCAATGAGAAGAGCTTTGAGCTGGAG 2162
Query 2371 ATCAAATCAGCTGATAATTGCATTCTCCAAGAACAACTACAGGA-AAAGTGTACCGAGAA 2429
|||| |||||| |||||| | ||||||||||||||||||||| | |||||||||||||||
Sbjct 2163 ATCATATCAGCAGATAATCGTATTCTCCAAGAACAACTACAG-ACAAAGTGTACCGAGAA 2221
Query 2430 CAAAGAACTACATGAAAAGGTGAATCTTCTAGAGCAACGCTTGAATGCAGTATCTAGTGA 2489
||| ||| | || ||||||||| ||||||||||| |||| || | | | | ||| || |
Sbjct 2222 CAATGAATTGCACGAAAAGGTGCATCTTCTAGAGGAACGATT-A-T-C-GAATC-AGAG- 2275
Query 2490 GAAATCCTCTCCATCTTGTTCCAATAAAGCGGT-ATCTGGAGAGTATGCAGACGAACTAA 2548
| ||| | | |||||||| || || || | ||| |||||||| |||||| || |
Sbjct 2276 G---TCCACACTGTCTTGTTCTGAT---GCTGTGA-CTGAAGAGTATGTAGACGAGCTGA 2328
Query 2549 AAAAGAAAATACAATCGCAGGAAATTGAGAACGAAGA-GTTGAAGCTAGAACACGTGCA- 2606
|||||||| |||| || ||||| ||||||||| || | |||||||||||| || |||||
Sbjct 2329 AAAAGAAAGTACAGTCTCAGGAGATTGAGAAC-AATAAGTTGAAGCTAGAGCATGTGCAG 2387
Query 2607 AATCGTGGAAGAGAACAGTGGGTTACGAGTACAAAATCAAAAACTAGCTGAAGAAGCTTC 2666
||| ||||| ||||| ||||| |||||||| |||||||| ||| ||||||||||||||||
Sbjct 2388 AAT-GTGGAGGAGAAGAGTGGATTACGAGTGCAAAATCAGAAATTAGCTGAAGAAGCTTC 2446
Query 2667 ATATGCTAAGGAGTTAGCCTCTGCGGCTGCTGTTGAGCTGAAAAATCTTGCT-AGCGAAG 2725
||| || ||||| || ||||| || |||||| |||||||||| ||||| ||| | ||||
Sbjct 2447 ATACGCAAAGGAATTGGCCTCGGCAGCTGCTATTGAGCTGAAGAATCTAGCTGAT-GAAG 2505
Query 2726 TAACAAAACTCTCACTACAAAACACAAAGCTAGAAAAAGAATTAGCAGCTGCAAGAGACT 2785
| ||||| ||||| || |||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 2506 TTACAAAGCTCTCGCTTCAAAACGCAAAGCTAGAAAAAGAATTAGTAGCTGCAAGAGACT 2565
Query 2786 TGGC 2789
||||
Sbjct 2566 TGGC 2569
Score = 163 bits (88), Expect = 8e-39
Identities = 175/217 (81%), Gaps = 6/217 (3%)
Strand=Plus/Plus
Query 2896 GACGCATGGAATCT-AGACCCAGAAGATCTTAAAATGGAGTTGCAAGTAAGGAAACAACG 2954
||| ||||||| || | ||| |||| |||| | |||||| ||||| | ||| ||||| ||
Sbjct 2658 GACTCATGGAACCTCA-ACCAAGAAAATCTCACAATGGAATTGCAGGCAAGAAAACAGCG 2716
Query 2955 AGAAGTGGCT-CTTGAGTCTGCATTGGCAGAGAAAGAGTTTATAGAAGATGAATACAGGA 3013
||||| | | || ||| || |||| || |||||| | | |||||||| || || | ||
Sbjct 2717 AGAAGCAG-TACTGGAGGCTACATTAGCTGAGAAACAATACATAGAAGAAGAGTATAAGA 2775
Query 3014 AAAAAGCAGAAGAGGCAAAGCGAAGAGAGGAAG-CTTTAGAAAACGATTTGGCAAACATG 3072
||||||| ||||| |||||| ||||||| || | | || ||||||||||| || ||||||
Sbjct 2776 AAAAAGCGGAAGAAGCAAAGAGAAGAGAAGAGGCCCTT-GAAAACGATTTAGCCAACATG 2834
Query 3073 TGGGTACTTGTTGCCAAGTTGAAGAAAGACAATGGTG 3109
|||||||||||||||||||||||||||| |||| |||
Sbjct 2835 TGGGTACTTGTTGCCAAGTTGAAGAAAGCCAATAGTG 2871
> Ahg952455 jgi|Araly1|952455|scaffold_7400001.1
Length=556
Score = 300 bits (162), Expect = 6e-80
Identities = 332/408 (81%), Gaps = 35/408 (9%)
Strand=Plus/Plus
Query 1075 GGCACTTATGTTGAGGGTATCAAGGAAGAAGTTGTTTTGTCTCCTGGCCATGCACTATCA 1134
|||||||| ||||| |||| ||||||||||||||||| ||| | || ||||| |||| |
Sbjct 133 GGCACTTACGTTGAATGTATTAAGGAAGAAGTTGTTTTATCTACAGGACATGCGCTAT-A 191
Query 1135 -TTCATTGCAGCTGGGGAAGAACATCGTCATGTTGGTTCAAATAATTTCAATTTGTTGAG 1193
|||| ||| |||||| ||||||||||||||||||||||||||| | |||| |||||| |
Sbjct 192 TTTCACTGCTGCTGGGAAAGAACATCGTCATGTTGGTTCAAATAGTATCAACTTGTTGGG 251
Query 1194 CAGCAGAAGTCACACTATATTTACACTGATGGTTGAAAGTAGTGCTACTGGAGATGAATA 1253
||||| ||||||||| |||||||| | | | | || | | | |||| | ||||
Sbjct 252 CAGCACAAGTCACACAATATTTAC-C-CA-AG--G--AG--CT-C-A-TGGACACCAATA 299
Query 1254 TGATGGAGTTATCTTTTCTCAACTCAA-TTTGATTGACTTAGCTGGATCTGAGAGTTC-- 1310
|||||||||||| |||||| | || || ||||||||||||||||||||||||||||||
Sbjct 300 TGATGGAGTTATTTTTTCTGAGCT-AAGTTTGATTGACTTAGCTGGATCTGAGAGTTCCA 358
Query 1311 -GA------AAACTGAA-ACAACTGGATTGAGGAGGAAGGAGGGTTCATACATCAACAAG 1362
|| ||||| || | ||| |||||||||||||| |||||| |||||||||||||
Sbjct 359 CGAGTTCCGAAACT-AAGATAACGGGATTGAGGAGGAAAGAGGGTGCATACATCAACAAT 417
Query 1363 AGTCTTCTAACTCTTGGAACTGTGATTGGAAAACT-TAGTGAGGGTAAGG-CAACTCACA 1420
|||||||| |||||||||||||||||||||||||| | ||| || | || |||||| |
Sbjct 418 AGTCTTCTGACTCTTGGAACTGTGATTGGAAAACTGTC-TGACGGCA-GGACAACTC-C- 473
Query 1421 T-TCC-ATATCGTGACTCTAAGCTAACTCGTCTTCTGCAATCTTCATT 1466
| ||| || ||| ||||||| ||||||| ||||||| |||||||||||
Sbjct 474 TGTCCCATTTCGAGACTCTACGCTAACTTGTCTTCTCCAATCTTCATT 521
> Ahg949340 jgi|Araly1|949340|scaffold_801227.1
Length=511
Score = 174 bits (94), Expect = 4e-42
Identities = 166/198 (84%), Gaps = 15/198 (8%)
Strand=Plus/Plus
Query 1281 TTTGATTGACTTAGCTGGATCTGAGAGTTC---GA------AAACTGAA-ACAACTGGAT 1330
|||||||||||||||||||||||||||||| || ||||| || | ||| ||||
Sbjct 282 TTTGATTGACTTAGCTGGATCTGAGAGTTCCACGAGTTCCGAAACT-AAGATAACGGGAT 340
Query 1331 TGAGGAGGAAGGAGGGTTCATACATCAACAAGAGTCTTCTAACTCTTGGAACTGTGATTG 1390
|||||||||| |||||| ||||||||||||| |||||||| |||||||||||||||||||
Sbjct 341 TGAGGAGGAAAGAGGGTGCATACATCAACAATAGTCTTCTGACTCTTGGAACTGTGATTG 400
Query 1391 GAAAACT-TAGTGAGGGTAAGG-CAACTCACATTCCATATCGTGACTCTAAGCTAACTCG 1448
||||||| | ||| || | || ||||||| | |||| ||| ||||||| ||||||| |
Sbjct 401 GAAAACTGTC-TGACGGCA-GGACAACTCATGTCCCATTTCGAGACTCTACGCTAACTTG 458
Query 1449 TCTTCTGCAATCTTCATT 1466
|||||| |||||||||||
Sbjct 459 TCTTCTCCAATCTTCATT 476
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 139709350483
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5