BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39070.1
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490675 jgi|Araly1|490675|fgenesh2_kg.7__108__AT4G39070.1 1210 0.0
> Ahg490675 jgi|Araly1|490675|fgenesh2_kg.7__108__AT4G39070.1
Length=849
Score = 1210 bits (655), Expect = 0.0
Identities = 774/829 (93%), Gaps = 17/829 (2%)
Strand=Plus/Plus
Query 76 AGAAAATAGAAAGATGAAGATTTGGTGTGCTGTTTGTGATAAAGAAGAAGCTTCGGTGTT 135
||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 36 AGAAAATAGAAAGATGAAGATTTGGTGTGATGTGTGTGATAAAGAAGAAGCATCGGTGTT 95
Query 136 TTGTTGTGCGGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATTTCGCCAA 195
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 TTGTTGTGCAGATGAAGCAGCTCTTTGTAATGGTTGCGATCGCCATGTTCATTTCGCCAA 155
Query 196 TAAACTAGCCGGGAAACATCTCCGGTTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCC 255
||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 156 TAAGCTCGCCGGAAAACATCTCCGATTCTCTCTCACTTCTCCTACTTTCAAAGATGCTCC 215
Query 256 TCTTTGTGATATTTGCGGGGAGAGGCGTGCATTATTATTTTGCCAAGAAGACAGAGCAAT 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 TCTTTGTGATATTTGCGGGGAGAGGCGTGCATTATTATTTTGCCAAGAAGACAGAGCAAT 275
Query 316 ACTATGCAGAGAATGTGACATTCCAATACATCAAGCTAATGAGCACACTAAGAAACACAA 375
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 276 ACTATGCAGAGAATGTGACATTCCTATACATCAAGCTAATGAGCACACTAAGAAACACAA 335
Query 376 TAGATTCCTCCTTACCGGCGTTAAGATCTCTGCCTCCCCGTCAGCCTACCCAAGAGCCTC 435
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 336 TAGATTCCTCCTTACGGGCGTCAAGATCTCTGCCTCCCCGTCAGCATACCCAAGAGCCTC 395
Query 436 CAATTCCAACTCTGCTGCTGCATTTGGTCGAGCCAAAACCCGACCAAAATCAGTATCGAG 495
|||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 396 CAATTCCAACTCCGCTGCTGCATTGGGTCGAGCCAAACCCCGACCAAAATCAGTATCGAG 455
Query 496 CGAGGTCCCGAGCTCGGCCTCCAATGAGGTATTTACGAGCTCTTCTTCGACGACCACGAG 555
||||||||| ||||| || |||||||||||||||||||||||| |||| |||||||||||
Sbjct 456 CGAGGTCCCTAGCTCTGCTTCCAATGAGGTATTTACGAGCTCTCCTTCAACGACCACGAG 515
Query 556 CAATTGCTATTATGGGATAGAAGAAAACTACCATCACGTGAGCGATTCGGGGTCGGGATC 615
||||||||||||||||||||| |||||||||||||| |||||||| || ||||| |||||
Sbjct 516 CAATTGCTATTATGGGATAGAGGAAAACTACCATCAAGTGAGCGACTCAGGGTCTGGATC 575
Query 616 GGGTTGTACAGGTAGTATATCCGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGA 675
|||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 576 AGGTTGTACGGGTAGCATATCGGAGTATTTGATGGAGACATTACCGGGTTGGAGAGTGGA 635
Query 676 GGATTTGCTTGAACACCCTTCTTGTGTCTCCTATGAGGATAACATTATTACTAATAACAA 735
|||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 636 AGATTTGCTTGAACATCCTTCTTGTGTTTCCTATGAGGATAACATTATTACGAATAACAA 695
Query 736 TAACAGTGAGTCTTATAGGGTTTATGATGGTTCTTCACAATTCCATCATCAAGGGTTTTG 795
|||||||||||||||||||||||||||||||| | | | |||| | ||||||||
Sbjct 696 TAACAGTGAGTCTTATAGGGTTTATGATGGTT----A---T-C-ATCA--A-GGGTTTTG 743
Query 796 GGATCACAAACCCTTCTCTTGAACTTATTTCTGTCGAATTATAGTCtttttt-ttAT-AA 853
||| || |||||||||||||||| | |||| ||| ||||||||||||||||| || | ||
Sbjct 744 GGAACAAAAACCCTTCTCTTGAA-T-ATTTTTGTTGAATTATAGTCTTTTTTCTT-TGAA 800
Query 854 GTTGGGGTTTGTAATCATGAATCCAAACCAACTTGTTgttttcgttttt 902
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 801 GTTGGGGTTTGTAATCATGAATCCAAACCAACTTATTGTTTTCGTTTTT 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38046671166
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5