BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39100.1
Length=1194
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490678 jgi|Araly1|490678|fgenesh2_kg.7__111__AT4G39100.1 1360 0.0
> Ahg490678 jgi|Araly1|490678|fgenesh2_kg.7__111__AT4G39100.1
Length=1079
Score = 1360 bits (736), Expect = 0.0
Identities = 864/923 (94%), Gaps = 19/923 (2%)
Strand=Plus/Plus
Query 143 TTTCAGATGCCCAAGCAAAAAGCTCCAAGGAAGCAGCTCAAGTCCTATAAACTCAAACAC 202
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 90 TTTCAGATGCCCAAGCAAAAAGCTCCAAGGAAGCAACTCAAGTCTTATAAGCTCAAACAC 149
Query 203 ATCAACAAGA-GTATTCAAGAGGGAGATGCTGTGTTGATGCGGTCGTCGGAGCCTGGAAA 261
|||||||||| | |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 150 ATCAACAAGACG-ATTCAAGATGGAGATGCTGTGTTGATGCGGTCGTCGGAGCCTGGGAA 208
Query 262 ACCGTCGTACGTAGCGAGGGTAGAGGCGATCGAGACGGACGCGCGTGGATCGCACGCGAA 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 ACCGTCGTACGTAGCGAGGGTAGAGGCGATCGAGACGGACGCGCGTGGATCGCACGCGAA 268
Query 322 AGTTCGTGTGAGGTGGTATTATCGCCCTGAGGAATCTATCGGAGGGAGGAGACAATTCCA 381
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 269 AGTTCGTGTGAGGTGGTATTATCGCCCTGAGGAATCTATCGGAGGGAGGAGACAGTTTCA 328
Query 382 TGGAGCCAAGGAGGTTTTTCTCTCTGACCACTTCGATTTTCAAAGCGCCGATACGATTGA 441
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||
Sbjct 329 TGGAGCCAAGGAGGTTTTCCTCTCTGACCACTTCGATTTTCAAAGCGCCGATACCATCGA 388
Query 442 AGGAAAGTGTAAGGTTCACAGTTTCAGTAGCTACACCAAACTTGACTCTGTTGGAAACGA 501
||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 389 AGGAAAGTGCAAGGTCCACAGTTTCAGTAGCTACACCAAACTCGACTCCGTTGGAAACGA 448
Query 502 CGACTTCTTCTGTCGTTTCGAGTACAATTCCACTACCGGCGCGTTTGATCCTGACAGAGT 561
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 449 CGACTTCTTCTGTCGTTTCGAGTACAATTCCGCCACCGGCGCGTTTGATCCTGACAGAGT 508
Query 562 CACCGTGTTCTGCAAGTGTGAGATGCCGTATAACCCAGATGACTTGATGGTGCAATGCGA 621
| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 509 CGCCGTGTTCTGCAAGTGTGAGATGCCGTATAACCCTGATGACTTGATGGTACAATGTGA 568
Query 622 GGAGTGTTCTGAGTGGTTTCATCCTTCTTGTATAGGAACAACAATAGAGGAAGCTAAAAA 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 GGAGTGTTCTGAGTGGTTTCATCCTTCTTGTATAGGAACAACAATAGAGGAAGCTAAAAA 628
Query 682 GCCAGATAACTTCTACTGCGAAGAGTGTTCCCCACAACAGCAGAATTTGCACAACTCTAA 741
|| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 629 GCTAGATAACTTCTACTGCGAAGAGTGTTCCCCACAAGAGCAGAATTTGCATAACTCTAA 688
Query 742 TTCAACTTCCAATAACAGAGATGCTAAGGTGAATGGAAAGCGCAGCCTGGAGGTAACTAA 801
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 689 CTCAACTTCCAAAAACAGAGATGCTAAGGTGAATGGAAAGCGCAGCCTGGAGGTAACCAA 748
Query 802 ATCGAAGAACAAACACACTAAGCGACCAGGTTAACATAAA--CTTGTAAAGGCTATAGA- 858
||||||| |||||||||||||||||||||||||||||| | ||||||||||||| |
Sbjct 749 GCCGAAGAAAAAACACACTAAGCGACCAGGTTAACATAAAAACCTGTAAAGGCTATATAC 808
Query 859 -TA--TCTGGTTGG-TGAGTCTGAGTATCAATCGTGTAATCTACAAAGGTGGTTTTGTTT 914
|| ||||||||| ||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 809 ATAAATCTGGTTGGGTGAGT-TGAGTATCAATCGTGTAATCAACAAAGGTGGTTT-GTTT 866
Query 915 TCTTTCCCTCTCTAGTTTTTTC-TTTCTTAAAAAATGAGGGTTTAGGTTTGTTGGCTTGA 973
|||||| ||| ||||||||||| ||| ||||| |||||||||||||||| ||||||||||
Sbjct 867 TCTTTCTCTCACTAGTTTTTTCGTTT-TTAAAGAATGAGGGTTTAGGTT-GTTGGCTTGA 924
Query 974 TTGTTGTATAATTTATATGTATAGCGTATGGTGGTTTCTCATCTCCTTTAGTTGTCACAT 1033
|| |||||||||||||||||||||| |||||| || ||| |||||||||||||||||||
Sbjct 925 TTATTGTATAATTTATATGTATAGCCTATGGT--TT-CTCGTCTCCTTTAGTTGTCACAT 981
Query 1034 ATAAAATTTGGGTAAAATGGTTT 1056
||| ||||||| |||||||||
Sbjct 982 G-AAA-TTTGGGTTAAATGGTTT 1002
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44565689973
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5