BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39110.1
Length=2637
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943881 jgi|Araly1|943881|scaffold_700110.1 4433 0.0
Ahg481013 jgi|Araly1|481013|fgenesh2_kg.4__73__AT2G21480.1 2108 0.0
> Ahg943881 jgi|Araly1|943881|scaffold_700110.1
Length=2696
Score = 4433 bits (2400), Expect = 0.0
Identities = 2569/2650 (97%), Gaps = 14/2650 (1%)
Strand=Plus/Plus
Query 1 ATGGAGATAAGAAAGAAACCAAACATATTCACGGTTCTCGTCATTGATTTTTCTTCAAAG 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 28 ATGGAGATAAGAAAGAAACCAAACATATTCACGGTTCTCGTCATTTATTTTTCTTCAATG 87
Query 61 CCTTCCATGGCTCTCCTTCTGGCTATTCTCCTTTTCCTCTCAGGCCCTTCTGCATCTGCG 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 88 CCTTCCATGGCTCTCCTTCTGGCTATTCTCCTCTTCCTCTCAGGCCCTTCTGCATCTGCG 147
Query 121 GTAGCTGCAGCTGCTGTGGGACCTGCTACTGGTTTTAAACCGGCAGATGATATTCTCATT 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 148 GTAGCTGCCGCTGCTGTGGGACCTGCTACTGGTTTTAAACCGGCAGATGATATTCTCATT 207
Query 181 GATTGTGGAAGCAAATCGTCATCAAAAACCCCTGATGGAAGAGTCTTTAAGAGTGACCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 208 GATTGTGGAAGCAAATCGTCATCAAAAACCCCTGATGGAAGAGTCTTTAAGAGTGACCAA 267
Query 241 GAAACAATCCAATACATAGAAGCCAAGGAAGATATTCAGGTCTCAGCCCCGCCTTCAGAC 300
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 268 GAAACAATCCAATACATAGAAGCCAAGGAAGACATTCAGGTCTCGGCCCCGCCTTCAGAC 327
Query 301 AAGGTCGCATCTCCTATCTACCTAACTGCAAGGATCTTCCGTGAGGAAGCCACCTACAAA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 AAGGTCGCTTCTCCTATCTACCTAACTGCAAGGATCTTCCGTGAGGAAGCCACCTACAAA 387
Query 361 TTCCATTTGACTCGACCTGGTTGGCATTGGGTTCGCCTGCATTTCTTGGCCTTCCCTAAT 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 388 TTCCATTTGACTCGACCTGGTTGGCATTGGGTTCGCCTTCATTTCTTGGCCTTCCCTAAT 447
Query 421 GACAAGTTCGATCTCCAACAAGCAACCTTTTCCGTTTTAACGGAGAAATATGTGCTGCTT 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 GACAAGTTCGATCTTCAACAAGCAACCTTTTCCGTTTTAACGGAGAAATATGTGCTGCTT 507
Query 481 CATAACTTCAAAATAAGTAACAACAACAATGATAGTCAAGCTGCTGTTCAGAAGGAGTAT 540
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 508 CATAACTTCAAAATAAGTAACAATAACAATGATAGTCAAGCTGTTGTTCAGAAGGAGTAT 567
Query 541 CTCGTCAACATGACAGATGCTCAATTCGCCCTCAGGTTCAGACCTATGAAAAGCTCTGCA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 CTCGTCAACATGACAGATGCTCAATTCGCCCTCAGGTTCAGACCTATGAAAAGCTCTGCA 627
Query 601 GCGTTCATCAACGCTATCGAAGTCGTGTCAGCTCCAGACGAACTGATCTCTGATTCTGGC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 GCGTTCATCAACGCTATCGAAGTCGTGTCAGCTCCAGACGAACTGATCTCTGATTCTGGC 687
Query 661 ACTGCCCTTTTCCCTGTCATTGGGTTCTCGGGTCTGTCTGACTACGCTTACCAGTCTGTT 720
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 688 ACTGCCCTTTTCCCTGTCAATGGGTTCTCGGGTCTGTCTGATTACGCTTACCAGTCTGTT 747
Query 721 TATAGAGTCAATGTCGGCGGTCCCTTGATCATGCCTCAGAATGATACATTAGGAAGAACC 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TATAGAGTCAATGTCGGTGGTCCCTTGATCATGCCTCAGAATGATACATTAGGAAGAACC 807
Query 781 TGGATACCCGATAAGGAATTCTTGAAAGATGAGAACTTGGCAAAGGACGTTAAAACAACC 840
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 808 TGGATACCGGATAAGGAATTCTTGAAAGATGAGAACTTGGCAAAGGACGTCAAAACAACC 867
Query 841 CCTTCGGCAATCAAGTACCCACCGGAAGTTACACCTTTGATTGCTCCACAGACGGTTTAT 900
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 868 CCTTCAGCAATCAAGTACCCACCGGAAGTTACACCTTTGATTGCTCCACAGACGGTCTAT 927
Query 901 GCAACAGCTGTAGAAATGGCTAATTCTCTCACCATAGACCCTAATTTTAACGTCTCCTGG 960
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GCAACAGCTGTGGAAATGGCTAATTCTCTCACCATAGACCCTAATTTTAACGTCTCCTGG 987
Query 961 AATTTCCCCTCCAACCCATCGTTTAACTACCTTATCCGGCTTCATTTCTGTGATATCGTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 988 AATTTCCCCTCCAACCCATCGTTTAACTACCTTATCCGGCTTCATTTCTGTGATATCGTT 1047
Query 1021 AGCAAGTCTCTCAATGACCTGTACTTTAATGTGTACATTAACGGGAAAACTGCCATTTCT 1080
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1048 AGCAAGTCTCTCAATGACCTCTACTTTAATGTGTACATTAACGGGAAAACTGCCATTTCT 1107
Query 1081 GGACTGGATTTGTCCACTGTCGCTGGGAATCTAGCTGCTCCTTACTACAAAGACATCGTT 1140
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1108 GGGCTGGATTTGTCCACTGTCGCTGGGAATCTAGCAGCTCCTTACTACAAAGACATTGTT 1167
Query 1141 GTGAACGCAACACTTATGGGCCCTGAGCTCCAAGTCCAGATTGGTCCCATGGGAGAAGAT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1168 GTGAACGCAACACTTATGGGCCCTGAGCTCCAAGTCCAGATTGGTCCCATGGGAGAAGAT 1227
Query 1201 ACAGGGACCAAAAACGCGATCTTGAACGGTGTTGAGGTTCTGAAGATGAGCAATTCCGTG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 ACAGGGACCAAAAACGCGATCTTGAACGGTGTTGAGGTTCTGAAGATGAGCAATTCCGTG 1287
Query 1261 AACAGCCTTGATGGAGAGTTTGGAGTGGATGGTAGAACCACTGGCATGGGGAAGCATGGT 1320
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1288 AACAGCCTTGATGGAGAGTTTGGAGTTGATGGTAGAACCACTGGCATGGGGAAGCATGGT 1347
Query 1321 ATGGTAGCAACCGCGGGGTTTGTGATGATGTTTGGAGCTTTCATTGGTCTGGGAGCCATG 1380
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1348 ATGGTTGCAACCGCAGGGTTTGTGATGATGTTTGGAGCTTTCATTGGTCTGGGAGCCATG 1407
Query 1381 GTTTACAAGTGGAAGAAGAGGCCACAAGATTGGCAGAAGAGAAATAGTTTCTCCTCTTGG 1440
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1408 GTTTACAGGTGGAAGAAGAGGCCACAAGATTGGCAGAAGAGAAACAGTTTCTCCTCTTGG 1467
Query 1441 TTGCTACCAATACATGCTGGTGATAGCACTTTCATGACAAGCAAAGGTGGTTCTCAGAAA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468 TTGCTACCAATACATGCTGGTGATAGCACTTTCATGACAAGCAAAGGTGGTTCTCAGAAA 1527
Query 1501 TCCAACTTCTACAACTCAACACTTGGTCTCGGCCGCTATTTCTCCCTTTCAGAGCTTCAA 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1528 TCCAACTTCTACAACTCAACACTTGGTCTCGGCCGCTATTTCTCCCTTTCAGAGCTTCAA 1587
Query 1561 GAAGCCACAAAGAACTTTGAAGCATCCCAGATTATCGGTGTTGGAGGATTCGGTAACGTC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 GAAGCCACAAAGAACTTTGAAGCATCCCAGATTATCGGTGTTGGAGGATTCGGTAACGTC 1647
Query 1621 TACATTGGAACCCTCGACGATGGAACCAAAGTCGCTGTCAAAAGAGGTAATCCACAGTCT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 TACATTGGAACCCTCGACGATGGAACCAAAGTCGCTGTCAAAAGAGGTAATCCACAGTCT 1707
Query 1681 GAACAAGGAATCACTGAGTTTCAGACAGAGATCCAGATGCTTTCTAAGCTCAGACACAGA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1708 GAACAAGGAATCACTGAGTTTCAGACAGAGATCCAGATGCTTTCTAAGCTCAGACACAGA 1767
Query 1741 CACTTGGTCTCCTTGATTGGTTACTGTGACGAGAACTCTGAGATGATCTTAGTCTATGAG 1800
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1768 CACTTGGTCTCCTTGATTGGTTACTGTGATGAGAACTCTGAGATGATCTTAGTCTATGAG 1827
Query 1801 TTCATGTCCAATGGTCCATTCAGGGACCACTTGTATGGAAAGAACCTTGCTCCTCTAACC 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1828 TTCATGTCCAATGGTCCATTCAGGGACCACTTGTATGGAAAGAACCTTGCTCCTCTAACC 1887
Query 1861 TGGAAACAAAGACTCGAGATATGTATCGGATCTGCACGTGGGCTTCACTACTTACACACA 1920
||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1888 TGGAAACAACGACTTGAGATATGTATTGGATCTGCACGTGGGCTTCACTACTTACACACA 1947
Query 1921 GGAACAGCTCAGGGGATTATCCACCGTGATGTCAAATCCACCAACATTCTTCTCGATGAA 1980
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1948 GGAACAGCTCAGGGGATTATCCACCGTGATGTCAAATCCACCAACATTCTTCTCGATGAC 2007
Query 1981 GCTTTAGTTGCAAAAGTCGCTGACTTTGGTCTTTCTAAAGATGTAGCTTTTGGACAAAAC 2040
||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2008 GCTTTAGTTGCTAAACTCGCTGACTTTGGTCTTTCTAAAGATGTTGCTTTTGGACAAAAC 2067
Query 2041 CATGTCAGCACGGCCGTGAAAGGAAGTTTCGGGTACTTAGACCCGGAGTACTTTAGAAGA 2100
|||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2068 CATGTCAGCACGGCTGTAAAAGGAAGTTTCGGATACTTAGACCCGGAATACTTTAGAAGA 2127
Query 2101 CAACAACTTACCGACAAATCCGATGTTTATTCCTTTGGTGTCGTTCTTCTAGAAGCTCTG 2160
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2128 CAGCAACTTACCGACAAATCCGATGTTTATTCCTTTGGTGTTGTTCTTCTAGAAGCTCTG 2187
Query 2161 TGCGCAAGACCAGCCATCAATCCTCAGCTACCAAGAGAGCAGGTTAACTTAGCTGAATGG 2220
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2188 TGCGCAAGACCAGCAATCAATCCTCAGCTACCAAGAGAGCAGGTTAACCTAGCTGAATGG 2247
Query 2221 GCGATGCAATGGAAACGAAAAGGACTTCTTGAAAAGATCATTGATCCTCATTTGGCTGGA 2280
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2248 GCAATGCAATGGAAACGAAAAGGACTTCTCGAAAAGATCATTGATCCTCATTTGGCTGGA 2307
Query 2281 ACGATTAATCCTGAATCGATGAAGAAGTTTGCTGAAGCTGCAGAGAAGTGTTTAGAAGAC 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2308 ACGATTAATCCTGAATCGATGAAGAAGTTTGCTGAAGCTGCAGAGAAGTGTTTGGAAGAC 2367
Query 2341 TACGGTGTCGATAGGCCAACAATGGGAGATGTTCTGTGGAACTTGGAGTATGCTCTTCAG 2400
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2368 TATGGTGTTGATAGGCCAACAATGGGAGATGTTCTATGGAACTTGGAGTATGCTCTTCAG 2427
Query 2401 CTTCAAGAGGCATTCACTCAGGGCAAAGCAGAAGAGACCGAGAACGCTAAGCCTGATGT- 2459
||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||| |||
Sbjct 2428 CTTCAAGAGGCATTCACCCAGGGAAAAGCCGAAGAGACTGAGAACGCTAAGCCTGGTGTA 2487
Query 2460 GGTGACACCTGGCTCGGTGCCTGTGTCTGATCCATCTCCGATCACTCCCTCAGTCACCAC 2519
|| ||||||||||||||| || ||||||| ||||||||||||| ||||||||| ||||||
Sbjct 2488 GG-GACACCTGGCTCGGTACCGGTGTCTGCTCCATCTCCGATCGCTCCCTCAGCCACCAC 2546
Query 2520 CAACGAAGCGGCTACTGTTCCGGTTCCTGCTAAGGTGGAAGAGAACAGTGGCAC-G--G- 2575
||| | ||||||||||||||| ||| || |||||||||||||||||| |||||| | |
Sbjct 2547 CAATGCAGCGGCTACTGTTCCCGTTTCTTCTAAGGTGGAAGAGAACAATGGCACAGCCGA 2606
Query 2576 ----C---C-GTGGATGAACACTCTGGAACAGCCATGTTTACTCAGTTTGCTAACCTTAA 2627
| | ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2607 GGGTCAGGCCGTGGACGAACACTCTGGAACAGCCATGTTTACTCAGTTTGCTAACCTTAA 2666
Query 2628 CGGAAGATAA 2637
||||||||||
Sbjct 2667 CGGAAGATAA 2676
> Ahg481013 jgi|Araly1|481013|fgenesh2_kg.4__73__AT2G21480.1
Length=2514
Score = 2108 bits (1141), Expect = 0.0
Identities = 1782/2093 (85%), Gaps = 37/2093 (2%)
Strand=Plus/Plus
Query 355 TACAAATTCCATTTGACTCGACCTGGTTGGCATTGGGTTCGCCTGCATTTCTTGGCCTTC 414
||||| | ||| || || || || ||||||||||||||||| || |||||||| ||||||
Sbjct 251 TACAAGTGCCA-TTAACCCGTCCCGGTTGGCATTGGGTTCGTCTCCATTTCTTTGCCTTC 309
Query 415 CCTAATGACAAGTTCGATCTCCAACAAGCAACCTTT-TCCGTTTTAACGGAGAAATATGT 473
|| ||||||||||| |||||||| ||||||| |||| || |||||||| ||||| || ||
Sbjct 310 CCAAATGACAAGTTTGATCTCCAGCAAGCAA-CTTTCTCTGTTTTAACAGAGAAGTACGT 368
Query 474 GC-TGCTTCATAACTTCAAAATAAGTAACAACAACAATGATAGTCAAGCTGCTGTTCAGA 532
| ||||||||||||| ||| | |||||||||||||||||||| |||||| |||||||||
Sbjct 369 -CTTGCTTCATAACTTTAAACTGAGTAACAACAACAATGATAGCCAAGCTACTGTTCAGA 427
Query 533 AGGAGTATCTCGTCAACATGACAGATGCTCAATTCGCCCTCAGGTTCAGACCTATGAAAA 592
| ||||| |||||||||||||| ||||| ||||||||||| ||||||| ||||||||||
Sbjct 428 AAGAGTACCTCGTCAACATGACCGATGCACAATTCGCCCTTAGGTTCAAACCTATGAAAG 487
Query 593 GCTCTGCAGCGTTCATCAACGCTATCGAAGTCGTGTCAGCTCCAGACGAACTGATCTCTG 652
| ||||| || |||||||||| ||||||| | |||||||||||||||||||| |||||||
Sbjct 488 GTTCTGCCGCTTTCATCAACGGTATCGAACTTGTGTCAGCTCCAGACGAACTTATCTCTG 547
Query 653 ATTCTGGCACTGCCCTTTTCCCTGTCATTGGGTTCTCGGGTCTGTCTGACTACGCTTACC 712
|| | |||||| | ||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 548 ATGCAGGCACTTCTCTTTTCCCTGTCAACGGGTTCTCGGGTCTGTCTGATTACGCATACC 607
Query 713 AGTCTGTTTATAGAGTCAATGTCGGCGGTCCCTTGATCATGCCTCAGAATGATACATTAG 772
|||| ||||| || || ||||| || || |||||||||| |||||||||||| |||||||
Sbjct 608 AGTCGGTTTACAGGGTTAATGTTGGTGGCCCCTTGATCACGCCTCAGAATGACACATTAG 667
Query 773 GAAGAACCTGGATACCCGATAAGGAATTCTTGAAAGATGAGAACT-TGGCAAAGGACGTT 831
|||||||||||| ||| || || |||| ||||||||||||||| | |||| ||||| ||
Sbjct 668 GAAGAACCTGGACACCTGACAAAGAATACTTGAAAGATGAGAA-TCTGGCTAAGGATGTC 726
Query 832 AAAACAACCCCTTCGGCAATCAAGTACCCACC-GGAAGTTACACCTTTGATTGCTCCACA 890
||||||| |||| | || |||| || || || || | |||||||| ||||||| |||||
Sbjct 727 AAAACAAACCCTACAGCGATCATCTATCCTCCTGG-ACTTACACCTCTGATTGCGCCACA 785
Query 891 GACGGTTTATGCAACA-GCTGTAGAAATGGCTAATTCTCTCACCATAGACCCTAATTTTA 949
||||||||| |||||| || | ||| |||||| |||||| |||||||| ||||| || |
Sbjct 786 GACGGTTTACGCAACAGGC-GCAGAGATGGCTGATTCTCAAACCATAGATCCTAACTTCA 844
Query 950 ACGTCTCCTGGAATTTCCCCTCCAACCCATCGTTTAACTACCTT-ATCCGGCTTCATTTC 1008
| ||| | ||||| ||||| || |||||||| ||| |||| ||| || || |||||||||
Sbjct 845 ATGTCACATGGAACTTCCCATCAAACCCATCATTTCACTA-CTTCATTCGTCTTCATTTC 903
Query 1009 TGTGATATCGTTAGCAAGTCTCTCAATGACCTGTACTTTAATGTGTACATTAACGGGAAA 1068
||||| ||| | ||||||||||| |||||||| ||||| || || ||||| || |||||
Sbjct 904 TGTGACATCATCAGCAAGTCTCTTAATGACCTCTACTTCAACGTTTACATCAA-TGGAAA 962
Query 1069 -ACTGCCATTTCTGGACTGGATTTGTCCACTGTCGCTGG-GAATCTAGCTGCTCCTTACT 1126
|| |||||||| || || |||||||||||||| ||||| | |||| ||||||||||||
Sbjct 963 GACCGCCATTTCCGGGCTAGATTTGTCCACTGTAGCTGGCG-ATCTTTCTGCTCCTTACT 1021
Query 1127 ACAAAGACATCGTTGTGAACGCAACACTTATGGGCCCTGAGCTCCAAGTCCAGATTGGTC 1186
|||||||||| || |||||| | || |||||| ||||||| || || ||||||||||
Sbjct 1022 ACAAAGACATTGTGGTGAACTCGACTCTTATGAAATCTGAGCTTCAGGTGCAGATTGGTC 1081
Query 1187 CCATGGGAGAAGATACAGGGACCAAA-AACGCGATCTTGAACGGTGTTGAGGTTCTGAAG 1245
||||||||||||| || |||| ||| ||||||||||||||||| || ||||| ||||||
Sbjct 1082 CCATGGGAGAAGACACTGGGA-AAAAGAACGCGATCTTGAACGGAGTCGAGGTCCTGAAG 1140
Query 1246 ATGAGCAATTCCGTGAACAGCCTTGATGGAGAGTTTGGAGTGGATGGTAGAACCA-CTG- 1303
|||||||| || |||||||| ||||||||||| |||||||| ||||||| || | | |
Sbjct 1141 ATGAGCAACTCTGTGAACAGTCTTGATGGAGAATTTGGAGTTGATGGTA-AAAGAGC-GA 1198
Query 1304 GCATGGGGAAGCATGGTATGGTAGCAACCGCGGGGTTTGTGATGATGTTTGGAGCTTTCA 1363
| ||||||||||| || ||||| ||||| ||||| ||||||||||||||||| ||||||
Sbjct 1199 GTATGGGGAAGCAGGGGATGGTTGCAACTGCGGGTTTTGTGATGATGTTTGGCGCTTTCG 1258
Query 1364 TTGGTCTGGGAGCCATGGTTTACAAGTGGAAGAAGAGGCCACAAGATTGGCAGAAGAGAA 1423
| ||||| ||||| ||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct 1259 TAGGTCTTGGAGCAATGGTTTACAAATGGAAGAAGAGACCCCAAGATTGGCAGAAGAGAA 1318
Query 1424 ATAGTTTCTCCTCTTGGTTGCTACCAATACATGCTGGTGATAGCACTTTCATGACAAGCA 1483
| |||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||
Sbjct 1319 ACAGTTTCTCTTCTTGGTTACTACCAATACATGCCGGTGACAGTACTTTCATGACAAGCA 1378
Query 1484 AAGGTGGTTCTCAGAAATCCAACTTCTACAACTCAACACTTGGTCTCGGCCGCTATTTCT 1543
|| |||||||| ||||||||||| ||||| || | ||||| ||||| ||||||||||
Sbjct 1379 AAACAGGTTCTCACAAATCCAACTTGTACAATTCCGCGCTTGGCCTCGGACGCTATTTCT 1438
Query 1544 CCCTTTCAGAGCTTCAAGAAGCCACAAAGAACTTTGAAGCATCCCAGATTATCGGTGTTG 1603
|||| |||||||||||||||| |||||||||||| || ||||| |||| ||||||||||
Sbjct 1439 CCCTCTCAGAGCTTCAAGAAGTCACAAAGAACTTCGATGCATCAGAGATCATCGGTGTTG 1498
Query 1604 GAGGATTCGGTAACGTCTACATTGGAACCCTCGACGATGGAAC-CAAAGTCGCTGTCAAA 1662
| ||||| || ||||| |||||||| ||| | ||||| ||||| | |||| || |||||
Sbjct 1499 GTGGATTTGGAAACGTTTACATTGGTACCATTGACGACGGAACTC-AAGTTGCCATCAAA 1557
Query 1663 AGAGGTAATCCACAGTCTGAACAAGGAATCACTGAGTTTCAGACAGAGATCCAGATGCTT 1722
|||| ||||||||||| || ||||| ||||| ||||||||||||||||| || |||||
Sbjct 1558 CGAGGCAATCCACAGTCAGAGCAAGGGATCACAGAGTTTCAGACAGAGATTCAAATGCTG 1617
Query 1723 TCTAAGCTCAGACACAGACACTTGGTCTCCTTGATTGGTTACTGTGACGAGAACTCTGAG 1782
|| || |||||||| |||||||| |||||||||||||| ||||| || |||||||| |||
Sbjct 1618 TCCAAACTCAGACATAGACACTTAGTCTCCTTGATTGGATACTGCGATGAGAACTCAGAG 1677
Query 1783 ATGAT-CTTAGTCTATGAGTTCATGTCCAATGGTCCATTCAGGGACCA-CTTGTA-TGGA 1839
||||| ||| ||||| || | ||||||||||||||| || || ||||| ||| || |||
Sbjct 1678 ATGATCCTT-GTCTACGAATACATGTCCAATGGTCCTTTTAGAGACCATCTT-TACGGGA 1735
Query 1840 AAGAACCTTGCTCCTCTAACCTGGAAACAAAGACTCGAGATATGTATCGGATCTGCACGT 1899
|| |||||| ||||| | || |||||||||||||| ||||| || || ||| |||| |||
Sbjct 1736 AA-AACCTTTCTCCTTTGACTTGGAAACAAAGACTTGAGATCTGCATTGGAGCTGCTCGT 1794
Query 1900 GGGCTTCACTACTTACACACAGGAACAGCTCAGGGGATTATCCACCGTGATGTCAAATCC 1959
||||| ||||| |||||||||||||||||||| || |||||||| ||||| |||||||||
Sbjct 1795 GGGCTACACTATTTACACACAGGAACAGCTCAAGGCATTATCCATCGTGACGTCAAATCC 1854
Query 1960 ACCAACATTCTTCTCGATGAAGCTTTAGTTGCAAAAGTCGCTGACTTTGGTCTTTCTAAA 2019
|| ||||||||||| ||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 1855 ACAAACATTCTTCTTGATGAAGCTTTAGTTGCTAAAGTAGCTGACTTTGGTCTCTCTAAA 1914
Query 2020 GATGTAGCTTTTGGACAAAACCATGTCAGCACGGCCGTGAAAGGAAGTTTCGGGTACTTA 2079
|| || || |||||||||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct 1915 GACGTTGCGTTTGGACAAAACCATGTCAGTACAGCCGTGAAAGGTAGTTTCGGGTATTTA 1974
Query 2080 GACCCGGAGTACTTTAGAAGACAACAACTTACCGACAAATCCGATGTTTATTCCTTTGGT 2139
||||| || ||||| || |||||||||||||| |||||||||||||||||||||||||||
Sbjct 1975 GACCCAGAATACTTCAGGAGACAACAACTTACAGACAAATCCGATGTTTATTCCTTTGGT 2034
Query 2140 GTCGTTCTTCTAGAAGCTCTGTGCGCAAGACCAGCCATCAATCCTCAGCTACCAAGAGAG 2199
|| ||||| ||||||||||| || |||||||||||||| || |||||||| ||||| ||
Sbjct 2035 GTTGTTCTACTAGAAGCTCTATGTGCAAGACCAGCCATTAACCCTCAGCTTCCAAGGGAA 2094
Query 2200 CAGGTTAACTTAGCTGAATGGGCGATGCAATGGAAACGAAAAGGACTT-CTTGAAAAGAT 2258
||||||||||||||||||||||| ||| |||||||| |||||| || || ||||||||
Sbjct 2095 CAGGTTAACTTAGCTGAATGGGCTATGTTATGGAAACAAAAAGGG-TTACTCGAAAAGAT 2153
Query 2259 CATTGATCCTCATTTGGCTGGAAC-GATTAATCCTGAATCGATGAAGAAGTTTGCTGAAG 2317
||| || |||||| | | ||| || | | ||||||||||| ||||| |||||||| ||||
Sbjct 2154 CATCGACCCTCATCTAGTTGGCACTG-TGAATCCTGAATCTATGAAAAAGTTTGCAGAAG 2212
Query 2318 CTGCAGAGAAGTGTTTAGAAGACTACGGTGTCGATAGGCCAACAATGGGAGATGT-TCTG 2376
|||||||||||||||||| ||| || ||||| ||||| ||||||||||||||||| | ||
Sbjct 2213 CTGCAGAGAAGTGTTTAGCAGATTATGGTGTTGATAGACCAACAATGGGAGATGTAT-TG 2271
Query 2377 TGGAACTTGGAGTATGCTCTTCAGCTTCAAGAGGCATTCACTCAGGGCAAAGC 2429
|||||||| || ||||||||||||||||||||||| || ||||||| |||||
Sbjct 2272 TGGAACTTAGAATATGCTCTTCAGCTTCAAGAGGCTTTTTCTCAGGGTAAAGC 2324
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99453629695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5