BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G39110.1 Length=2637 Score E Sequences producing significant alignments: (Bits) Value Ahg943881 jgi|Araly1|943881|scaffold_700110.1 4433 0.0 Ahg481013 jgi|Araly1|481013|fgenesh2_kg.4__73__AT2G21480.1 2108 0.0 > Ahg943881 jgi|Araly1|943881|scaffold_700110.1 Length=2696 Score = 4433 bits (2400), Expect = 0.0 Identities = 2569/2650 (97%), Gaps = 14/2650 (1%) Strand=Plus/Plus Query 1 ATGGAGATAAGAAAGAAACCAAACATATTCACGGTTCTCGTCATTGATTTTTCTTCAAAG 60 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 28 ATGGAGATAAGAAAGAAACCAAACATATTCACGGTTCTCGTCATTTATTTTTCTTCAATG 87 Query 61 CCTTCCATGGCTCTCCTTCTGGCTATTCTCCTTTTCCTCTCAGGCCCTTCTGCATCTGCG 120 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 88 CCTTCCATGGCTCTCCTTCTGGCTATTCTCCTCTTCCTCTCAGGCCCTTCTGCATCTGCG 147 Query 121 GTAGCTGCAGCTGCTGTGGGACCTGCTACTGGTTTTAAACCGGCAGATGATATTCTCATT 180 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 148 GTAGCTGCCGCTGCTGTGGGACCTGCTACTGGTTTTAAACCGGCAGATGATATTCTCATT 207 Query 181 GATTGTGGAAGCAAATCGTCATCAAAAACCCCTGATGGAAGAGTCTTTAAGAGTGACCAA 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 208 GATTGTGGAAGCAAATCGTCATCAAAAACCCCTGATGGAAGAGTCTTTAAGAGTGACCAA 267 Query 241 GAAACAATCCAATACATAGAAGCCAAGGAAGATATTCAGGTCTCAGCCCCGCCTTCAGAC 300 |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 268 GAAACAATCCAATACATAGAAGCCAAGGAAGACATTCAGGTCTCGGCCCCGCCTTCAGAC 327 Query 301 AAGGTCGCATCTCCTATCTACCTAACTGCAAGGATCTTCCGTGAGGAAGCCACCTACAAA 360 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 328 AAGGTCGCTTCTCCTATCTACCTAACTGCAAGGATCTTCCGTGAGGAAGCCACCTACAAA 387 Query 361 TTCCATTTGACTCGACCTGGTTGGCATTGGGTTCGCCTGCATTTCTTGGCCTTCCCTAAT 420 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 388 TTCCATTTGACTCGACCTGGTTGGCATTGGGTTCGCCTTCATTTCTTGGCCTTCCCTAAT 447 Query 421 GACAAGTTCGATCTCCAACAAGCAACCTTTTCCGTTTTAACGGAGAAATATGTGCTGCTT 480 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 448 GACAAGTTCGATCTTCAACAAGCAACCTTTTCCGTTTTAACGGAGAAATATGTGCTGCTT 507 Query 481 CATAACTTCAAAATAAGTAACAACAACAATGATAGTCAAGCTGCTGTTCAGAAGGAGTAT 540 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 508 CATAACTTCAAAATAAGTAACAATAACAATGATAGTCAAGCTGTTGTTCAGAAGGAGTAT 567 Query 541 CTCGTCAACATGACAGATGCTCAATTCGCCCTCAGGTTCAGACCTATGAAAAGCTCTGCA 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 568 CTCGTCAACATGACAGATGCTCAATTCGCCCTCAGGTTCAGACCTATGAAAAGCTCTGCA 627 Query 601 GCGTTCATCAACGCTATCGAAGTCGTGTCAGCTCCAGACGAACTGATCTCTGATTCTGGC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 628 GCGTTCATCAACGCTATCGAAGTCGTGTCAGCTCCAGACGAACTGATCTCTGATTCTGGC 687 Query 661 ACTGCCCTTTTCCCTGTCATTGGGTTCTCGGGTCTGTCTGACTACGCTTACCAGTCTGTT 720 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 688 ACTGCCCTTTTCCCTGTCAATGGGTTCTCGGGTCTGTCTGATTACGCTTACCAGTCTGTT 747 Query 721 TATAGAGTCAATGTCGGCGGTCCCTTGATCATGCCTCAGAATGATACATTAGGAAGAACC 780 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 748 TATAGAGTCAATGTCGGTGGTCCCTTGATCATGCCTCAGAATGATACATTAGGAAGAACC 807 Query 781 TGGATACCCGATAAGGAATTCTTGAAAGATGAGAACTTGGCAAAGGACGTTAAAACAACC 840 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 808 TGGATACCGGATAAGGAATTCTTGAAAGATGAGAACTTGGCAAAGGACGTCAAAACAACC 867 Query 841 CCTTCGGCAATCAAGTACCCACCGGAAGTTACACCTTTGATTGCTCCACAGACGGTTTAT 900 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 868 CCTTCAGCAATCAAGTACCCACCGGAAGTTACACCTTTGATTGCTCCACAGACGGTCTAT 927 Query 901 GCAACAGCTGTAGAAATGGCTAATTCTCTCACCATAGACCCTAATTTTAACGTCTCCTGG 960 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 928 GCAACAGCTGTGGAAATGGCTAATTCTCTCACCATAGACCCTAATTTTAACGTCTCCTGG 987 Query 961 AATTTCCCCTCCAACCCATCGTTTAACTACCTTATCCGGCTTCATTTCTGTGATATCGTT 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 988 AATTTCCCCTCCAACCCATCGTTTAACTACCTTATCCGGCTTCATTTCTGTGATATCGTT 1047 Query 1021 AGCAAGTCTCTCAATGACCTGTACTTTAATGTGTACATTAACGGGAAAACTGCCATTTCT 1080 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1048 AGCAAGTCTCTCAATGACCTCTACTTTAATGTGTACATTAACGGGAAAACTGCCATTTCT 1107 Query 1081 GGACTGGATTTGTCCACTGTCGCTGGGAATCTAGCTGCTCCTTACTACAAAGACATCGTT 1140 || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1108 GGGCTGGATTTGTCCACTGTCGCTGGGAATCTAGCAGCTCCTTACTACAAAGACATTGTT 1167 Query 1141 GTGAACGCAACACTTATGGGCCCTGAGCTCCAAGTCCAGATTGGTCCCATGGGAGAAGAT 1200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1168 GTGAACGCAACACTTATGGGCCCTGAGCTCCAAGTCCAGATTGGTCCCATGGGAGAAGAT 1227 Query 1201 ACAGGGACCAAAAACGCGATCTTGAACGGTGTTGAGGTTCTGAAGATGAGCAATTCCGTG 1260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1228 ACAGGGACCAAAAACGCGATCTTGAACGGTGTTGAGGTTCTGAAGATGAGCAATTCCGTG 1287 Query 1261 AACAGCCTTGATGGAGAGTTTGGAGTGGATGGTAGAACCACTGGCATGGGGAAGCATGGT 1320 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1288 AACAGCCTTGATGGAGAGTTTGGAGTTGATGGTAGAACCACTGGCATGGGGAAGCATGGT 1347 Query 1321 ATGGTAGCAACCGCGGGGTTTGTGATGATGTTTGGAGCTTTCATTGGTCTGGGAGCCATG 1380 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1348 ATGGTTGCAACCGCAGGGTTTGTGATGATGTTTGGAGCTTTCATTGGTCTGGGAGCCATG 1407 Query 1381 GTTTACAAGTGGAAGAAGAGGCCACAAGATTGGCAGAAGAGAAATAGTTTCTCCTCTTGG 1440 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1408 GTTTACAGGTGGAAGAAGAGGCCACAAGATTGGCAGAAGAGAAACAGTTTCTCCTCTTGG 1467 Query 1441 TTGCTACCAATACATGCTGGTGATAGCACTTTCATGACAAGCAAAGGTGGTTCTCAGAAA 1500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1468 TTGCTACCAATACATGCTGGTGATAGCACTTTCATGACAAGCAAAGGTGGTTCTCAGAAA 1527 Query 1501 TCCAACTTCTACAACTCAACACTTGGTCTCGGCCGCTATTTCTCCCTTTCAGAGCTTCAA 1560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1528 TCCAACTTCTACAACTCAACACTTGGTCTCGGCCGCTATTTCTCCCTTTCAGAGCTTCAA 1587 Query 1561 GAAGCCACAAAGAACTTTGAAGCATCCCAGATTATCGGTGTTGGAGGATTCGGTAACGTC 1620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1588 GAAGCCACAAAGAACTTTGAAGCATCCCAGATTATCGGTGTTGGAGGATTCGGTAACGTC 1647 Query 1621 TACATTGGAACCCTCGACGATGGAACCAAAGTCGCTGTCAAAAGAGGTAATCCACAGTCT 1680 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1648 TACATTGGAACCCTCGACGATGGAACCAAAGTCGCTGTCAAAAGAGGTAATCCACAGTCT 1707 Query 1681 GAACAAGGAATCACTGAGTTTCAGACAGAGATCCAGATGCTTTCTAAGCTCAGACACAGA 1740 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1708 GAACAAGGAATCACTGAGTTTCAGACAGAGATCCAGATGCTTTCTAAGCTCAGACACAGA 1767 Query 1741 CACTTGGTCTCCTTGATTGGTTACTGTGACGAGAACTCTGAGATGATCTTAGTCTATGAG 1800 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1768 CACTTGGTCTCCTTGATTGGTTACTGTGATGAGAACTCTGAGATGATCTTAGTCTATGAG 1827 Query 1801 TTCATGTCCAATGGTCCATTCAGGGACCACTTGTATGGAAAGAACCTTGCTCCTCTAACC 1860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1828 TTCATGTCCAATGGTCCATTCAGGGACCACTTGTATGGAAAGAACCTTGCTCCTCTAACC 1887 Query 1861 TGGAAACAAAGACTCGAGATATGTATCGGATCTGCACGTGGGCTTCACTACTTACACACA 1920 ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1888 TGGAAACAACGACTTGAGATATGTATTGGATCTGCACGTGGGCTTCACTACTTACACACA 1947 Query 1921 GGAACAGCTCAGGGGATTATCCACCGTGATGTCAAATCCACCAACATTCTTCTCGATGAA 1980 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1948 GGAACAGCTCAGGGGATTATCCACCGTGATGTCAAATCCACCAACATTCTTCTCGATGAC 2007 Query 1981 GCTTTAGTTGCAAAAGTCGCTGACTTTGGTCTTTCTAAAGATGTAGCTTTTGGACAAAAC 2040 ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 2008 GCTTTAGTTGCTAAACTCGCTGACTTTGGTCTTTCTAAAGATGTTGCTTTTGGACAAAAC 2067 Query 2041 CATGTCAGCACGGCCGTGAAAGGAAGTTTCGGGTACTTAGACCCGGAGTACTTTAGAAGA 2100 |||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||| Sbjct 2068 CATGTCAGCACGGCTGTAAAAGGAAGTTTCGGATACTTAGACCCGGAATACTTTAGAAGA 2127 Query 2101 CAACAACTTACCGACAAATCCGATGTTTATTCCTTTGGTGTCGTTCTTCTAGAAGCTCTG 2160 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2128 CAGCAACTTACCGACAAATCCGATGTTTATTCCTTTGGTGTTGTTCTTCTAGAAGCTCTG 2187 Query 2161 TGCGCAAGACCAGCCATCAATCCTCAGCTACCAAGAGAGCAGGTTAACTTAGCTGAATGG 2220 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2188 TGCGCAAGACCAGCAATCAATCCTCAGCTACCAAGAGAGCAGGTTAACCTAGCTGAATGG 2247 Query 2221 GCGATGCAATGGAAACGAAAAGGACTTCTTGAAAAGATCATTGATCCTCATTTGGCTGGA 2280 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2248 GCAATGCAATGGAAACGAAAAGGACTTCTCGAAAAGATCATTGATCCTCATTTGGCTGGA 2307 Query 2281 ACGATTAATCCTGAATCGATGAAGAAGTTTGCTGAAGCTGCAGAGAAGTGTTTAGAAGAC 2340 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2308 ACGATTAATCCTGAATCGATGAAGAAGTTTGCTGAAGCTGCAGAGAAGTGTTTGGAAGAC 2367 Query 2341 TACGGTGTCGATAGGCCAACAATGGGAGATGTTCTGTGGAACTTGGAGTATGCTCTTCAG 2400 || ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 2368 TATGGTGTTGATAGGCCAACAATGGGAGATGTTCTATGGAACTTGGAGTATGCTCTTCAG 2427 Query 2401 CTTCAAGAGGCATTCACTCAGGGCAAAGCAGAAGAGACCGAGAACGCTAAGCCTGATGT- 2459 ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||| ||| Sbjct 2428 CTTCAAGAGGCATTCACCCAGGGAAAAGCCGAAGAGACTGAGAACGCTAAGCCTGGTGTA 2487 Query 2460 GGTGACACCTGGCTCGGTGCCTGTGTCTGATCCATCTCCGATCACTCCCTCAGTCACCAC 2519 || ||||||||||||||| || ||||||| ||||||||||||| ||||||||| |||||| Sbjct 2488 GG-GACACCTGGCTCGGTACCGGTGTCTGCTCCATCTCCGATCGCTCCCTCAGCCACCAC 2546 Query 2520 CAACGAAGCGGCTACTGTTCCGGTTCCTGCTAAGGTGGAAGAGAACAGTGGCAC-G--G- 2575 ||| | ||||||||||||||| ||| || |||||||||||||||||| |||||| | | Sbjct 2547 CAATGCAGCGGCTACTGTTCCCGTTTCTTCTAAGGTGGAAGAGAACAATGGCACAGCCGA 2606 Query 2576 ----C---C-GTGGATGAACACTCTGGAACAGCCATGTTTACTCAGTTTGCTAACCTTAA 2627 | | ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 2607 GGGTCAGGCCGTGGACGAACACTCTGGAACAGCCATGTTTACTCAGTTTGCTAACCTTAA 2666 Query 2628 CGGAAGATAA 2637 |||||||||| Sbjct 2667 CGGAAGATAA 2676 > Ahg481013 jgi|Araly1|481013|fgenesh2_kg.4__73__AT2G21480.1 Length=2514 Score = 2108 bits (1141), Expect = 0.0 Identities = 1782/2093 (85%), Gaps = 37/2093 (2%) Strand=Plus/Plus Query 355 TACAAATTCCATTTGACTCGACCTGGTTGGCATTGGGTTCGCCTGCATTTCTTGGCCTTC 414 ||||| | ||| || || || || ||||||||||||||||| || |||||||| |||||| Sbjct 251 TACAAGTGCCA-TTAACCCGTCCCGGTTGGCATTGGGTTCGTCTCCATTTCTTTGCCTTC 309 Query 415 CCTAATGACAAGTTCGATCTCCAACAAGCAACCTTT-TCCGTTTTAACGGAGAAATATGT 473 || ||||||||||| |||||||| ||||||| |||| || |||||||| ||||| || || Sbjct 310 CCAAATGACAAGTTTGATCTCCAGCAAGCAA-CTTTCTCTGTTTTAACAGAGAAGTACGT 368 Query 474 GC-TGCTTCATAACTTCAAAATAAGTAACAACAACAATGATAGTCAAGCTGCTGTTCAGA 532 | ||||||||||||| ||| | |||||||||||||||||||| |||||| ||||||||| Sbjct 369 -CTTGCTTCATAACTTTAAACTGAGTAACAACAACAATGATAGCCAAGCTACTGTTCAGA 427 Query 533 AGGAGTATCTCGTCAACATGACAGATGCTCAATTCGCCCTCAGGTTCAGACCTATGAAAA 592 | ||||| |||||||||||||| ||||| ||||||||||| ||||||| |||||||||| Sbjct 428 AAGAGTACCTCGTCAACATGACCGATGCACAATTCGCCCTTAGGTTCAAACCTATGAAAG 487 Query 593 GCTCTGCAGCGTTCATCAACGCTATCGAAGTCGTGTCAGCTCCAGACGAACTGATCTCTG 652 | ||||| || |||||||||| ||||||| | |||||||||||||||||||| ||||||| Sbjct 488 GTTCTGCCGCTTTCATCAACGGTATCGAACTTGTGTCAGCTCCAGACGAACTTATCTCTG 547 Query 653 ATTCTGGCACTGCCCTTTTCCCTGTCATTGGGTTCTCGGGTCTGTCTGACTACGCTTACC 712 || | |||||| | ||||||||||||| |||||||||||||||||||| ||||| |||| Sbjct 548 ATGCAGGCACTTCTCTTTTCCCTGTCAACGGGTTCTCGGGTCTGTCTGATTACGCATACC 607 Query 713 AGTCTGTTTATAGAGTCAATGTCGGCGGTCCCTTGATCATGCCTCAGAATGATACATTAG 772 |||| ||||| || || ||||| || || |||||||||| |||||||||||| ||||||| Sbjct 608 AGTCGGTTTACAGGGTTAATGTTGGTGGCCCCTTGATCACGCCTCAGAATGACACATTAG 667 Query 773 GAAGAACCTGGATACCCGATAAGGAATTCTTGAAAGATGAGAACT-TGGCAAAGGACGTT 831 |||||||||||| ||| || || |||| ||||||||||||||| | |||| ||||| || Sbjct 668 GAAGAACCTGGACACCTGACAAAGAATACTTGAAAGATGAGAA-TCTGGCTAAGGATGTC 726 Query 832 AAAACAACCCCTTCGGCAATCAAGTACCCACC-GGAAGTTACACCTTTGATTGCTCCACA 890 ||||||| |||| | || |||| || || || || | |||||||| ||||||| ||||| Sbjct 727 AAAACAAACCCTACAGCGATCATCTATCCTCCTGG-ACTTACACCTCTGATTGCGCCACA 785 Query 891 GACGGTTTATGCAACA-GCTGTAGAAATGGCTAATTCTCTCACCATAGACCCTAATTTTA 949 ||||||||| |||||| || | ||| |||||| |||||| |||||||| ||||| || | Sbjct 786 GACGGTTTACGCAACAGGC-GCAGAGATGGCTGATTCTCAAACCATAGATCCTAACTTCA 844 Query 950 ACGTCTCCTGGAATTTCCCCTCCAACCCATCGTTTAACTACCTT-ATCCGGCTTCATTTC 1008 | ||| | ||||| ||||| || |||||||| ||| |||| ||| || || ||||||||| Sbjct 845 ATGTCACATGGAACTTCCCATCAAACCCATCATTTCACTA-CTTCATTCGTCTTCATTTC 903 Query 1009 TGTGATATCGTTAGCAAGTCTCTCAATGACCTGTACTTTAATGTGTACATTAACGGGAAA 1068 ||||| ||| | ||||||||||| |||||||| ||||| || || ||||| || ||||| Sbjct 904 TGTGACATCATCAGCAAGTCTCTTAATGACCTCTACTTCAACGTTTACATCAA-TGGAAA 962 Query 1069 -ACTGCCATTTCTGGACTGGATTTGTCCACTGTCGCTGG-GAATCTAGCTGCTCCTTACT 1126 || |||||||| || || |||||||||||||| ||||| | |||| |||||||||||| Sbjct 963 GACCGCCATTTCCGGGCTAGATTTGTCCACTGTAGCTGGCG-ATCTTTCTGCTCCTTACT 1021 Query 1127 ACAAAGACATCGTTGTGAACGCAACACTTATGGGCCCTGAGCTCCAAGTCCAGATTGGTC 1186 |||||||||| || |||||| | || |||||| ||||||| || || |||||||||| Sbjct 1022 ACAAAGACATTGTGGTGAACTCGACTCTTATGAAATCTGAGCTTCAGGTGCAGATTGGTC 1081 Query 1187 CCATGGGAGAAGATACAGGGACCAAA-AACGCGATCTTGAACGGTGTTGAGGTTCTGAAG 1245 ||||||||||||| || |||| ||| ||||||||||||||||| || ||||| |||||| Sbjct 1082 CCATGGGAGAAGACACTGGGA-AAAAGAACGCGATCTTGAACGGAGTCGAGGTCCTGAAG 1140 Query 1246 ATGAGCAATTCCGTGAACAGCCTTGATGGAGAGTTTGGAGTGGATGGTAGAACCA-CTG- 1303 |||||||| || |||||||| ||||||||||| |||||||| ||||||| || | | | Sbjct 1141 ATGAGCAACTCTGTGAACAGTCTTGATGGAGAATTTGGAGTTGATGGTA-AAAGAGC-GA 1198 Query 1304 GCATGGGGAAGCATGGTATGGTAGCAACCGCGGGGTTTGTGATGATGTTTGGAGCTTTCA 1363 | ||||||||||| || ||||| ||||| ||||| ||||||||||||||||| |||||| Sbjct 1199 GTATGGGGAAGCAGGGGATGGTTGCAACTGCGGGTTTTGTGATGATGTTTGGCGCTTTCG 1258 Query 1364 TTGGTCTGGGAGCCATGGTTTACAAGTGGAAGAAGAGGCCACAAGATTGGCAGAAGAGAA 1423 | ||||| ||||| ||||||||||| ||||||||||| || ||||||||||||||||||| Sbjct 1259 TAGGTCTTGGAGCAATGGTTTACAAATGGAAGAAGAGACCCCAAGATTGGCAGAAGAGAA 1318 Query 1424 ATAGTTTCTCCTCTTGGTTGCTACCAATACATGCTGGTGATAGCACTTTCATGACAAGCA 1483 | |||||||| |||||||| |||||||||||||| ||||| || |||||||||||||||| Sbjct 1319 ACAGTTTCTCTTCTTGGTTACTACCAATACATGCCGGTGACAGTACTTTCATGACAAGCA 1378 Query 1484 AAGGTGGTTCTCAGAAATCCAACTTCTACAACTCAACACTTGGTCTCGGCCGCTATTTCT 1543 || |||||||| ||||||||||| ||||| || | ||||| ||||| |||||||||| Sbjct 1379 AAACAGGTTCTCACAAATCCAACTTGTACAATTCCGCGCTTGGCCTCGGACGCTATTTCT 1438 Query 1544 CCCTTTCAGAGCTTCAAGAAGCCACAAAGAACTTTGAAGCATCCCAGATTATCGGTGTTG 1603 |||| |||||||||||||||| |||||||||||| || ||||| |||| |||||||||| Sbjct 1439 CCCTCTCAGAGCTTCAAGAAGTCACAAAGAACTTCGATGCATCAGAGATCATCGGTGTTG 1498 Query 1604 GAGGATTCGGTAACGTCTACATTGGAACCCTCGACGATGGAAC-CAAAGTCGCTGTCAAA 1662 | ||||| || ||||| |||||||| ||| | ||||| ||||| | |||| || ||||| Sbjct 1499 GTGGATTTGGAAACGTTTACATTGGTACCATTGACGACGGAACTC-AAGTTGCCATCAAA 1557 Query 1663 AGAGGTAATCCACAGTCTGAACAAGGAATCACTGAGTTTCAGACAGAGATCCAGATGCTT 1722 |||| ||||||||||| || ||||| ||||| ||||||||||||||||| || ||||| Sbjct 1558 CGAGGCAATCCACAGTCAGAGCAAGGGATCACAGAGTTTCAGACAGAGATTCAAATGCTG 1617 Query 1723 TCTAAGCTCAGACACAGACACTTGGTCTCCTTGATTGGTTACTGTGACGAGAACTCTGAG 1782 || || |||||||| |||||||| |||||||||||||| ||||| || |||||||| ||| Sbjct 1618 TCCAAACTCAGACATAGACACTTAGTCTCCTTGATTGGATACTGCGATGAGAACTCAGAG 1677 Query 1783 ATGAT-CTTAGTCTATGAGTTCATGTCCAATGGTCCATTCAGGGACCA-CTTGTA-TGGA 1839 ||||| ||| ||||| || | ||||||||||||||| || || ||||| ||| || ||| Sbjct 1678 ATGATCCTT-GTCTACGAATACATGTCCAATGGTCCTTTTAGAGACCATCTT-TACGGGA 1735 Query 1840 AAGAACCTTGCTCCTCTAACCTGGAAACAAAGACTCGAGATATGTATCGGATCTGCACGT 1899 || |||||| ||||| | || |||||||||||||| ||||| || || ||| |||| ||| Sbjct 1736 AA-AACCTTTCTCCTTTGACTTGGAAACAAAGACTTGAGATCTGCATTGGAGCTGCTCGT 1794 Query 1900 GGGCTTCACTACTTACACACAGGAACAGCTCAGGGGATTATCCACCGTGATGTCAAATCC 1959 ||||| ||||| |||||||||||||||||||| || |||||||| ||||| ||||||||| Sbjct 1795 GGGCTACACTATTTACACACAGGAACAGCTCAAGGCATTATCCATCGTGACGTCAAATCC 1854 Query 1960 ACCAACATTCTTCTCGATGAAGCTTTAGTTGCAAAAGTCGCTGACTTTGGTCTTTCTAAA 2019 || ||||||||||| ||||||||||||||||| ||||| |||||||||||||| |||||| Sbjct 1855 ACAAACATTCTTCTTGATGAAGCTTTAGTTGCTAAAGTAGCTGACTTTGGTCTCTCTAAA 1914 Query 2020 GATGTAGCTTTTGGACAAAACCATGTCAGCACGGCCGTGAAAGGAAGTTTCGGGTACTTA 2079 || || || |||||||||||||||||||| || ||||||||||| ||||||||||| ||| Sbjct 1915 GACGTTGCGTTTGGACAAAACCATGTCAGTACAGCCGTGAAAGGTAGTTTCGGGTATTTA 1974 Query 2080 GACCCGGAGTACTTTAGAAGACAACAACTTACCGACAAATCCGATGTTTATTCCTTTGGT 2139 ||||| || ||||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 1975 GACCCAGAATACTTCAGGAGACAACAACTTACAGACAAATCCGATGTTTATTCCTTTGGT 2034 Query 2140 GTCGTTCTTCTAGAAGCTCTGTGCGCAAGACCAGCCATCAATCCTCAGCTACCAAGAGAG 2199 || ||||| ||||||||||| || |||||||||||||| || |||||||| ||||| || Sbjct 2035 GTTGTTCTACTAGAAGCTCTATGTGCAAGACCAGCCATTAACCCTCAGCTTCCAAGGGAA 2094 Query 2200 CAGGTTAACTTAGCTGAATGGGCGATGCAATGGAAACGAAAAGGACTT-CTTGAAAAGAT 2258 ||||||||||||||||||||||| ||| |||||||| |||||| || || |||||||| Sbjct 2095 CAGGTTAACTTAGCTGAATGGGCTATGTTATGGAAACAAAAAGGG-TTACTCGAAAAGAT 2153 Query 2259 CATTGATCCTCATTTGGCTGGAAC-GATTAATCCTGAATCGATGAAGAAGTTTGCTGAAG 2317 ||| || |||||| | | ||| || | | ||||||||||| ||||| |||||||| |||| Sbjct 2154 CATCGACCCTCATCTAGTTGGCACTG-TGAATCCTGAATCTATGAAAAAGTTTGCAGAAG 2212 Query 2318 CTGCAGAGAAGTGTTTAGAAGACTACGGTGTCGATAGGCCAACAATGGGAGATGT-TCTG 2376 |||||||||||||||||| ||| || ||||| ||||| ||||||||||||||||| | || Sbjct 2213 CTGCAGAGAAGTGTTTAGCAGATTATGGTGTTGATAGACCAACAATGGGAGATGTAT-TG 2271 Query 2377 TGGAACTTGGAGTATGCTCTTCAGCTTCAAGAGGCATTCACTCAGGGCAAAGC 2429 |||||||| || ||||||||||||||||||||||| || ||||||| ||||| Sbjct 2272 TGGAACTTAGAATATGCTCTTCAGCTTCAAGAGGCTTTTTCTCAGGGTAAAGC 2324 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 99453629695 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5