BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39120.1
Length=1664
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490680 jgi|Araly1|490680|fgenesh2_kg.7__113__AT4G39120.1 1657 0.0
Ahg888113 jgi|Araly1|888113|Al_scaffold_0007_99 440 1e-122
> Ahg490680 jgi|Araly1|490680|fgenesh2_kg.7__113__AT4G39120.1
Length=1068
Score = 1657 bits (897), Expect = 0.0
Identities = 1016/1073 (95%), Gaps = 10/1073 (1%)
Strand=Plus/Plus
Query 61 TTCCGTGAACTTCCCACTCATAGCAAAATGTTAGCTCAGTCGCACTTCTTCTCTAAGTCC 120
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTCCGTCAACTTCCCACTCGTAGCAAAATGTTAGCTCAGTCGCACTTCTTCTCTAAGTCC 60
Query 121 TTCGATCTGATTCCGCCACAGTCTCCGGCGTTGCGGTCTGCAAA--TCcttctcttcgta 178
||||||||||||||||||| |||||||| ||||||||||| ||| ||| |||||||||
Sbjct 61 TTCGATCTGATTCCGCCACCGTCTCCGGTGTTGCGGTCTG-AAATTTCC-TCTCTTCGTC 118
Query 179 tctcttcttcttatagtaacagccgcttatcctttctt-tcttcttctGCAATTGCTGTT 237
|||||||||||||||| |||||||| || |||||| || | |||||||||||| ||||||
Sbjct 119 TCTCTTCTTCTTATAGAAACAGCCGATTCTCCTTT-TTATTTTCTTCTGCAATCGCTGTT 177
Query 238 CCCGTCTCCCGCCGTCGGTTTTGCCTGACTATGGCTTCAAACTCAAAACGGCCTAACATA 297
|||||||||||||||||| | | |||||| |||||||| ||||| |||||||||||| ||
Sbjct 178 CCCGTCTCCCGCCGTCGGATCTCCCTGACAATGGCTTCGAACTCTAAACGGCCTAACGTA 237
Query 298 AGC-AACGAGTCTCCTTCGGAACTTAGCGACACTGAGCTGGATCGATTCGCCGCTGTGGG 356
||| || |||||||||||| |||| ||||| |||||||||||||||||||||||||| ||
Sbjct 238 AGCGAA-GAGTCTCCTTCGAAACTGAGCGATACTGAGCTGGATCGATTCGCCGCTGTAGG 296
Query 357 AAATGCATTAGCTGACGCTTCCGGCGAGGTTATCAGAAAGTATTTCCGGAAGAAATTCGA 416
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 297 TAATGCATTAGCTGACGCTTCTGGCGAGGTTATCAGAAAGTATTTCCGGAAGAAATTCGA 356
Query 417 CATTGTTGATAAAGATGATATGAGCCCTGTTACAATCGCTGATCAAATGGCTGAAGAGGC 476
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 357 CATTGTTGATAAAGATGACATGAGTCCTGTTACAATCGCTGATCAAATGGCTGAAGAGGC 416
Query 477 AATGGTTTCCATTATATTCCAGAATCTCCCTTCTCATGCTATATATGGTGAGGAGAAGGG 536
||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 AATGGTTTCGATTATATTTCAGAATCTCCCTTCTCATGCTATATTTGGTGAGGAGAAGGG 476
Query 537 TTGGAGATGCAAAGAGGAATCTGCAGACTATGTTTGGGTTTTGGACCCAATCGACGGAAC 596
||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 477 TTGGAGATGCAAAGAAGAATCTGCAGACTATGTTTGGGTTTTGGATCCAATCGATGGAAC 536
Query 597 AAAGAGCTTTATTACAGGGAAACCCGTGTTTGGTACGCTGATTGCTCTGCTCTACAAAGG 656
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 537 AAAGAGCTTTATTACAGGGAAACCCGTGTTTGGTACGCTGATAGCTCTGCTCTACAAAGG 596
Query 657 TAAACCGATTCTAGGACTGATTGATCAGCCTATTCTAAAAGAGAGATGGATAGGAATGAA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 597 TAAACCGATTCTAGGACTGATTGATCAGCCTATTCTAAAAGAGAGATGGATAGGAATAAA 656
Query 717 TGGAAGAAGAACTAAACTAAACGGGGAGGATATCTCAACGCGATCTTGCCCCAAA-TTAT 775
|||| ||| ||||||| |||| |||||||||||||||||||||||||| |||||| ||||
Sbjct 657 TGGACGAAAAACTAAATTAAATGGGGAGGATATCTCAACGCGATCTTG-CCCAAATTTAT 715
Query 776 CACAAGCATATTTATACACCACTAGCCCACATCTTTTCAGTGAAGAGGCAGAAAAGGCAT 835
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 716 CACAAGCATATTTATACACCACTAGTCCACATCTTTTCAGTGGAGAGGCAGAAAAGGCAT 775
Query 836 ATTCTCGAGTTAGAGACAAGGTGAAAGTGCCCTTATACGGCTGTGATTGTTATGCTTACG 895
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 776 ATGCTCGAGTTAGAGACAAGGTGAAAGTGCCATTATACGGCTGTGATTGTTATGCTTACG 835
Query 896 CTCTCCTGGCTTCTGGATTTGTCGATCTTGTTATTGAATCCGGTCTAAAGCCATATGATT 955
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 836 CTCTCCTGGCTTCTGGATTTGTCGATCTTGTCATTGAATCCGGTCTAAAGCCATATGATT 895
Query 956 TCCTTGCTCTGGTGCCTGTAATAGAAGGCGCTGGAGGTACCATAACCGATTGGACTGGTA 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 TCCTTGCTCTGGTGCCTGTAATAGAAGGCGCTGGAGGTACCATAACCGATTGGACTGGTA 955
Query 1016 AACGATTTCTGTGGGAAGCTTCATCCAGTGCAGTTGCGACAAGCTTTAATGTAGTTGCAG 1075
| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 ACCCATTTCTGTGGGAGGCTTCATCCAGTGCAGTTGCGACAAGCTTTAATGTAGTTGCAG 1015
Query 1076 CAGGAGATTCAGACATTCATCAGCAGGCTTTGGAGTCACTTGAGTGGCATTGA 1128
|||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1016 CAGGAGATTCAGACATTCATCAGCAGACTTTGGAGTCACTTGAGTGGCAGTGA 1068
> Ahg888113 jgi|Araly1|888113|Al_scaffold_0007_99
Length=327
Score = 440 bits (238), Expect = 1e-122
Identities = 256/265 (97%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 1141 GAGAGGATTATCAAGGTACTATTCAGGAAAAGCGAGATCATTCATATGTATCTCAGATGT 1200
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 63 GAGAGGATTATCAAGGTACTATTCAGGGAAAGCAAGATCATTCATTTGTATCTCAGATGT 122
Query 1201 AAAATGCCTTGAGGATCTGAAGAAACCAACCCAAACTTTTGATGACGATGATGATGATGA 1260
|||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 123 AAAATGCCTTGAAGATCTCAAGAAACCAACCCAAACTTTTGATGATGACGATGATGATGA 182
Query 1261 GGCTTACAAGAAGAGGAAGAAGAAGAACAAGCAATCATCTTCATCTTCATTTTCTGCAGC 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 183 GGCTTACAAGAAGAGGAAGAAGAAGAACAAGCAATCATCTTCATCTTCATTTTCTGCTGC 242
Query 1321 TATTAACAGCAATGTGAATTTCTCAAACTACCCTTGTCGAAGGGTCTCTAGTAGCACCCA 1380
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 243 TATTAACAGCAATGTGAATTTCTCAAACTACCCTTGTCGAAGAGTCTCTAGTAGCACCCA 302
Query 1381 CTGTTCCTCACCTTGTGTTGCTTAG 1405
|||||||||||||||||||||||||
Sbjct 303 CTGTTCCTCACCTTGTGTTGCTTAG 327
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62391821310
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5