BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G39130.1

Length=529
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg327864 jgi|Araly1|327864|fgenesh1_pm.C_scaffold_7000091           479    9e-135


> Ahg327864 jgi|Araly1|327864|fgenesh1_pm.C_scaffold_7000091
Length=486

 Score =  479 bits (259),  Expect = 9e-135
 Identities = 350/392 (89%), Gaps = 13/392 (3%)
 Strand=Plus/Plus

Query  9    ATGGCGGATCTGAAAGACGAACGAGGAAATCCGATATATCTCACGGACGCACACGGGGAG  68
            ||||||||||||||||||||||||||||| ||||| |||||||| |||| ||||||| ||
Sbjct  1    ATGGCGGATCTGAAAGACGAACGAGGAAACCCGATCTATCTCACAGACGAACACGGGAAG  60

Query  69   CCAGCTCAGCTCATGGACGAGTTTGGTAACGCCATGCA-TTTGACAGGTGTGGCAACCAC  127
            || |||||||||||||| ||||||||||||||||||||  || | |||||||||||||||
Sbjct  61   CCGGCTCAGCTCATGGATGAGTTTGGTAACGCCATGCACCTT-AAAGGTGTGGCAACCAC  119

Query  128  CGTTCCTCACCTGAAGGAGAGCAGCTACACAGGTCCACACCCAATCACTGCCCCAGTCAC  187
            |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  120  CGTTCCTCACCTTAAGGAGAGCAGCTACACCGGTCCACACCCAATCACTGCCCCTGTCAC  179

Query  188  CACCACCAATACTCCTCACCACGCACAACCTATTTCCGTGTCCCACGACCCTCTTCAAGA  247
            |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  180  CACCACCAATACTCCTCACCACGCACAACCAATCTCCGTGTCCCACGACCCTCTTCAAGA  239

Query  248  CCATGATCTCCGCTGGTTCGGCACCAG-TTCGACGGAGGAGAA-TGGCGAAGGA-G-T-A  302
            ||||||||||||||||||||||||||  || | |||||||| | ||| || ||| | | |
Sbjct  240  CCATGATCTCCGCTGGTTCGGCACCAACTT-GCCGGAGGAGGACTGG-GA-GGATGGTGA  296

Query  303  GGGAGGAAA-ACTAATA-TAACGGATGAAACAAAATCGAAGCTAGGCGTCGACAAGCCAT  360
             |||| ||  | ||| | || |||| ||||| |||||||||||||||||| |||| ||||
Sbjct  297  AGGAGCAAGGAGTAAAACTA-CGGAAGAAACTAAATCGAAGCTAGGCGTCAACAACCCAT  355

Query  361  CAGCTGCGACCGTAACAGGATCAGGATCAGGA  392
            ||||||| |||||||||||| ||||| |||||
Sbjct  356  CAGCTGCAACCGTAACAGGAACAGGAACAGGA  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19268572445


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5