BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39140.1
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490685 jgi|Araly1|490685|fgenesh2_kg.7__118__AT4G39140.3 2254 0.0
> Ahg490685 jgi|Araly1|490685|fgenesh2_kg.7__118__AT4G39140.3
Length=1701
Score = 2254 bits (1220), Expect = 0.0
Identities = 1450/1554 (93%), Gaps = 43/1554 (3%)
Strand=Plus/Plus
Query 169 TTATAAGCACTGTCTTTGCATAGTGCTTAGTA---G-G---TGCTAGTTATGGGGAATGC 221
||||||||||||||||||| |||||||||||| | | ||| |||||||||||||||
Sbjct 171 TTATAAGCACTGTCTTTGCGTAGTGCTTAGTAGTTGCGACTTGCGAGTTATGGGGAATGC 230
Query 222 GTGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATCAGCTGGTGAGAATTT 281
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 ATGTTGTGTTGCTGCTCGAGACAAAATGGTGGTGCCTAATTCATCAGCTGGTGAGAATTT 290
Query 282 GCAGAGGAGCAATATCAGGCATTCTCCGTCTTGGAGTTTCCGGTGGGATAATAGAGGGCG 341
||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct 291 GCAGAGGAGCAATGTCAGGCATTCTCCGACTTGGAGTTTCCGTTGGGATAATAGAGGACG 350
Query 342 TGTAGCTGGTGAAGAAACTTCTCTCAGTTGGTTATCTGATGGTATTAGTCGGAACGATGG 401
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 351 TGTAGCTGGTGAAGAAACCTCTCTCAGTTGGTTATCTGATGGGATTAGTCGGAACGATGG 410
Query 402 CTCTGAGATCAAATTTGAATCTGCTTTCGTATCATCTGAAGGGTCCCCTTTGGACAGTTT 461
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 411 CTCTGAGATCAAATTTGAATCTGCTTTTGTATCATCTGAAGGTTCCCCTTTGGACAGTTT 470
Query 462 TCGGACACAGACATTGCAAAAATCTCCTGCCTCAGATCTATCTTTTCCAAGAAATTCTTC 521
|||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 471 TCGGACACAGGCATTGCAGAAATCCCCTGCCTCAGATCTATCTTTTCCAAGAAATTCTTC 530
Query 522 CATGAATACAGTCTTCGAACAGAAAGAAAATGTTTCAACAGAGTCTGCAGCACCATCATA 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CATGAATACAGTCTTCGAACAGAAAGAAAATGTTTCAACAGAGTCTGCAGCACCATCATA 590
Query 582 TCTATCTCCTGCACAGTTGTCTCTTTCACTAGCTTCACAACCATCATCTTTCCCTACGTC 641
|| |||||||||| | |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 591 TCCATCTCCTGCAAAATTGTCTCTTTCACTGGCTTCACAACCATCATCTTTCCCTACATC 650
Query 642 ACCACTTTCGTCCCAAAGCTACTTGCACCCTGCAAGTTCATCTACACTTAAACTGACACA 701
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 651 ACCACTTTCGTCCCAAAGCTACTTGCACCCTGCAAGTTCATCGACACTTAAACTGACACA 710
Query 702 GCACCCTCGTCTATCAAAGCAAGTCTCAGATGGTCAAATCTATGGTCAGAACTCACTAAG 761
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 711 TCGCCCTCGTCTATCAAAGCAAGTCTCAGATGGTCAAATCTATGGTCCGAACTCACTAAG 770
Query 762 TAGAAGCTCAGCAACTGAAGAGAGGCAGGGAACTCCTACGAGATATGATTCGTCTCAGTC 821
||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 771 TAGAAACTCAGCAACTGAAGAGAGGCAGGGAACTCCTTTGAGATATGATTCTTCTCAGTC 830
Query 822 TGGACCATCTGAAGGTTGGTCTCTACAAGCCTTTTCTGAAATGATGTCATCTTCTCGCAG 881
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 831 TGGACCATCTGAAGGTTGGTCACTGCAAGCCTTTTCTGAAATGATGTCATCTTCTCGCAG 890
Query 882 CAAC-AAGGCTCTGTCTTATGACAATTATGACAATGATTGTTTTGGGCTTCAACGTGACA 940
|||| || || |||||||||| | | | |||||| |||||||||||||||||||
Sbjct 891 CAACGAAC-CTTTGTCTTATGA---T-A--A---TGATTGCTTTGGGCTTCAACGTGACA 940
Query 941 AGATTGACCATCATGGCAACCGGATGTCCAAGCATCAGCAGCATACCTGCGGTGCTTGCT 1000
|||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||
Sbjct 941 AGATAGACCATCATGGCAACCGAATGTCCAAGCATCAGCAGCAAACTTGCGGTGCTTGCT 1000
Query 1001 CTAGACCCTTGTCGGAGAAATCCTTGTGGAGCAGCCAAAAGATCTTTATGACCAACGAGC 1060
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1001 CTAGACCCTTGTCAGAGAAATCCTTGTGGAGCAGCCAAAAGATCTTCATGACCAACGAGC 1060
Query 1061 TCTCTGTATCTGCAATTCTAGCTTGTGGGCATGTCTATCATGGGGAGTGTTTAGAGCAGA 1120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TCTCTGTGTCTGCAATTCTAGCTTGTGGGCATGTCTATCATGGGGAGTGTTTAGAGCAGA 1120
Query 1121 TGACGCCGGAAATTGATAAATTCGACCCTTCATGCCCAATATGTACAATGGGTGAGAAGA 1180
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1121 TGACGCCGGAAATCGATAAATTCGACCCTTCATGCCCAATCTGTACAATGGGTGAGAAGA 1180
Query 1181 AAACAGCGAAGCTGTCAGAGAAAGCGTTGAAAGTAGAGATGGATTTGAAAGCGAGACACA 1240
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1181 AAACGGCGAAGCTGTCAGAGAAAGCGTTGAAAGTAGAGATGGATTTGAAAGCTCGACACA 1240
Query 1241 ACAAAAGACTCAGAAACCGAGTTTTGGACAGTGACTTTGATTGCGATGATTTTGTAATGT 1300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 ACAAACGACTCAGAAACCGAGTTTTGGACAGTGACTTTGATTGCGATGATTTTGTAATGT 1300
Query 1301 TTGACCACAGCCACAGGACAGCAGCAGCA---GCAAGCAAGAGCCCTAGACT-CGTCTCA 1356
|||| |||||||||||||||||||||||| |||||||||||||||| ||| | ||||
Sbjct 1301 TTGATCACAGCCACAGGACAGCAGCAGCAACAGCAAGCAAGAGCCCTAAACTGC-TCTCG 1359
Query 1357 AGTTCGAGTGCTAAAAGCTATTCAGCAAAGCCTTTCTTGGCTCGACACTTCTCTTTCGGG 1416
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1360 AGTTCGAGTGCCAAAAGCTATTCTGCAAAGCCTTTCTTGGCTCGACACTTCTCTTTCGGG 1419
Query 1417 TCCAGAAGTAACTATAAATCCCCTAAAGAAAATCTTCCTGTGAAAAAGAAAGGCTTCTTC 1476
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1420 TCCAGAAGTAATTATAAATCCCCTAAAGAGAATCTTCCAGTGAAAAAGAAAGGCTTCTTC 1479
Query 1477 TGGACCAAATCCAGCAAAATATGAACTTATTTCGCCGTGCTCTGTACTTTGACTGCTGTC 1536
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1480 TGGACCAAATCCAGCAAAATATGAACTTCTTTCGCGGTGCTCTGTACTTTGACTGCTGTC 1539
Query 1537 TGAAGCATAGAAGTCGACACACAC-CG------GGG-CACGATACCATTCAGTTAAAAGC 1588
|||||||||||||||||||||||| | ||| |||| ||||||||| ||||||||
Sbjct 1540 TGAAGCATAGAAGTCGACACACACACACACACCGGGACACGGTACCATTCAATTAAAAGC 1599
Query 1589 AGTCTATTTGCTGTTACACACTTGCTCAACAAAGTCTTCTCATTGtttttttttttAATG 1648
|| ||||||| |||||||||||||||||||||| | || | ||||||| ||||
Sbjct 1600 AGGCTATTTGTTGTTACACACTTGCTCAACAAA-T-TT-T--TTGTTTT-------AATG 1647
Query 1649 AATACTAAATTTTCACACATGTAAAGTTACAAATTTAGATTACAAGGTTGGGGA 1702
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1648 AATACTTAATTTTCACACATGTAAAGTTACAAATTTAGATTACAAGGTTGGGGA 1701
Score = 137 bits (74), Expect = 2e-31
Identities = 117/135 (87%), Gaps = 13/135 (10%)
Strand=Plus/Plus
Query 1 TTTCATTTTTCTCCCTTTCTCACTCTAACAGACCCATCCATCGCTCTCTCTCTGTGAAAC 60
|||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 48 TTTCCTTTTTCTCCCTTTCTCACTCTAACAGACCCATC----GCTCTCTCTCCGTGAAAC 103
Query 61 TATCATCTTCCTCTTCTCCGGCGACGTTTTG-GAAGTTCTGGGAGCAGGTTCGATCTAGA 119
||||||||||||||||||||||||||||| || |||||||||||| | | |||
Sbjct 104 CGTCATCTTCCTCTTCTCCGGCGACGTTTTGAGAC-TTCTGGGAGCAG---C--T--AGA 155
Query 120 AAGGGATTGTTGTGC 134
|||||||||||||||
Sbjct 156 AAGGGATTGTTGTGC 170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63877340865
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5