BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39150.1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490686 jgi|Araly1|490686|fgenesh2_kg.7__119__AT4G39150.1 1600 0.0
Ahg481016 jgi|Araly1|481016|fgenesh2_kg.4__76__AT2G21510.1 924 0.0
Ahg918615 jgi|Araly1|918615|Al_scaffold_0734_1 896 0.0
> Ahg490686 jgi|Araly1|490686|fgenesh2_kg.7__119__AT4G39150.1
Length=1060
Score = 1600 bits (866), Expect = 0.0
Identities = 977/1030 (95%), Gaps = 9/1030 (1%)
Strand=Plus/Plus
Query 139 GCAAGGCAAGTTCATCCAGACAAGAACCCTGGTGATCCTCAAGCTGCTAAAAACTTTCAG 198
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 GCAAGGCAAGTTCATCCAGACAAGAACCATGGTGATCCTCAAGCTGCTAAAAACTTTCAG 60
Query 199 ATACTAGGTGAAGCTTATCAAGTTC-TAGGCGATCCGGAGAAGCGTACAGCTTATGACAA 257
||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||||
Sbjct 61 ATACTAGGTGAAGCTTACCAAGTTCTTA-GCGATCCGGAGAAGCGAACAGCTTATGACAA 119
Query 258 ATATGGAAAAGAAGGGGTTCAACAGGATGCAATGGTTGATCCTGCAGCTGTGTTTGGTAT 317
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATTTGGAAAACAAGGGGTTCAACAGGATGCAATGGTTGATCCTGCAGCTGTGTTTGGTAT 179
Query 318 GCTCTTTGGTAGCGAGCTCTTTGAGGATTACGTTGGGCAACTTGCCCTTGCTTCAGCAGC 377
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 180 GCTCTTTGGTAGCGAGCTCTTTGAGGAGTACGTTGGGCAACTTGCACTTGCTTCAATAGC 239
Query 378 CTCAATCGATGCTGAATTAGAATCGTATGAGCCTGAGATTAGAAAACAGATGCTTCAGGA 437
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 240 CTCAATCGATGCTGAATTAGAATCTTATGAGCCTGAGATTAGAAAACAGATGCTTCGGGA 299
Query 438 AAAGATCAAAGCGATACAAAAGGACAGAGTAGACAAGCTCGTCACTACACTGAAAATCAA 497
||||||||||||||| ||||| || |||||||||||||||||| ||||||||||||||||
Sbjct 300 AAAGATCAAAGCGATGCAAAACGATAGAGTAGACAAGCTCGTCGCTACACTGAAAATCAA 359
Query 498 ACTTGAACCATTCGTGGAAGGACAAACCGATGAATTTGTAAATTGGGCCACCGCAGAGGC 557
||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 360 ACTCGAACCATTCGTGGAAGGACAAACTGATGAATTTGTGAACTGGGCCACCGCAGAGGC 419
Query 558 AAAACGGCTTTCAACAGCTGGTTTTGGTGAGGCAATGCTTCACACAGTTGGTTACATTTA 617
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 420 AAAACGGCTTTCTACAGCTGGTTTTGGTGAGGCAATGCTTCACACCGTTGGATACATTTA 479
Query 618 CACTAGAAAAGCTGCTAAAGAACTCGGAAAGGATAAACGTTTCATGAAAGTACCGTTTTT 677
||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 480 CACTAGAAAAGCTTCTAAAGAACTCGGAAAGGATAAACGTTACATGAAAGTACCTTTTTT 539
Query 678 AGCCGAATGGGTTCGTGACAAAGGCCACCAAGTAAAATCTCAAGTGATGGCTGCTTCTGG 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 540 AGCCGAATGGGTTCGTGACAAAGGCCACCAAGTAAAATCTCAAGTGATGGCTGCTTCGGG 599
Query 738 TGCGGTCAAC-TTACTTCTGTTGCAGGATGAAGTGAGCAAGCTGAATCAGGGAGAGAACA 796
||||||| | || |||| ||||||||||||| |||||||||||||||| ||||||||||
Sbjct 600 TGCGGTC-TCGTTGCTTCAGTTGCAGGATGAAATGAGCAAGCTGAATCATGGAGAGAACA 658
Query 797 AAGAAGAGAATATTCAGAAAGCCATTGAAGCTAAAAAGGATGCAATGCTTCAATCCCTTT 856
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 AAGAAGAGAATATTCAGAAAGCCATTGAAGCTAAAAAAGATGCAATGCTTCAATCCCTTT 718
Query 857 GGCAAATAAATGTTGTTGACATCGAATCAACCTTATCTCGTGTCTGCCAAGCGGTGCTTA 916
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GGCAAATCAATGTTGTTGACATCGAATCAACCTTATCTCGTGTCTGCCAAGCGGTGCTTA 778
Query 917 AAGATCCAAGTGTTTCAAAGGATGTTCTTCGAGCTAGAGCTAGAGGATTGAGGAAGCTGG 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 779 AAGATCCAAGTGTTTCAAAGGATGTTCTTCGAGCTAGAGCTAGAGGATTGAGGAAGCTCG 838
Query 977 GTAACGTTTTCCAGGGTTCTAAGAAAGCGTATTCTAGAGAAAACAGCTTGCGTCATGAAG 1036
| ||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 839 GAAACATTTTTCAGGGTTCTAAGAAACCGTATTCTAGAGAAAACAGCTTGCGTCATGAAG 898
Query 1037 AAGAA-ACAGG-A--GTGAAAGTCCACACCGGAGATTCCTCGAAGCCGGCAACTTAAACC 1092
||||| | || | |||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGAAGA-AGCCACCGTGAAACTTCACACCGGAGATTCCTCGAAGCCGGCAACTTAAACC 957
Query 1093 AAGGTTCGAATCTATCGGTTCGAAACAGAACAATCAGGTTTTGTGAGAATTCTTGAATGT 1152
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 958 AAGGTTCGAATCTATCGGTTCGAAACAGAACAGTGTGGTTTTGTGAGAATTCTTGAATGT 1017
Query 1153 ATTGTAACGA 1162
||||||||||
Sbjct 1018 ATTGTAACGA 1027
> Ahg481016 jgi|Araly1|481016|fgenesh2_kg.4__76__AT2G21510.1
Length=1152
Score = 924 bits (500), Expect = 0.0
Identities = 841/1002 (84%), Gaps = 38/1002 (4%)
Strand=Plus/Plus
Query 51 TATGGTGAAGGAGAGTGAGTACTACGACATATTAGGCGTCAAGATTGACGCCTCTGGTGC 110
|||||||||||||| |||||||||||| || ||||||||||| | ||| || || | |||
Sbjct 52 TATGGTGAAGGAGAATGAGTACTACGAGATCTTAGGCGTCAAAACTGATGCTTCCGATGC 111
Query 111 TGAGATTAAGAAA-GCTTATTATGTT-CAAGCAAGGCAAGTTCATCCAGACAAGAACCCT 168
||||||||| ||| ||||| || || |||||||| ||||||| |||||||||||||||
Sbjct 112 TGAGATTAA-AAAGGCTTACTA-CTTAAAAGCAAGGAAAGTTCACCCAGACAAGAACCCT 169
Query 169 GGTGATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTATCAAGTTCTAG-G 227
|| || |||||||||||||| ||||||||| | ||||||| |||||||| ||||| | |
Sbjct 170 GGAGACCCTCAAGCTGCTAAGAACTTTCAGGTTTTAGGTGAGGCTTATCAGGTTCT-GAG 228
Query 228 CGATCCGGAGAAGCGTA-CAGCTTATGACAAATATGGAAAAGAAGGGGTTCAACAGGATG 286
| ||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 229 CAATCCGGAGAAGCG-AGCAGCTTATGACAAATATGGCAAAGAAGGGGTCCAACAGGATG 287
Query 287 CAATGGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTT-GGTAGCGA-GCTCTTTGAGGA 344
|||||||||||||||||||||| ||||||||||| ||| || ||||| | ||||||| ||
Sbjct 288 CAATGGTTGATCCTGCAGCTGTATTTGGTATGCT-TTTCGGAAGCGAAG-TCTTTGAAGA 345
Query 345 TTACGTTGGGCAACTTGCCCTTGCTTCAGCAGCC-TCAATCGATGCTGAATTAGAATCGT 403
|| ||||| || ||||| ||||||| | | | |||||||| ||||| ||||||||
Sbjct 346 ATATGTTGGCCAGCTTGCACTTGCTT-ATTTGGCATCAATCGAAGCTGACTTAGAATCAC 404
Query 404 ATGAGCCTGAGATTAGAAAACAGATGCTTCAGGAAAAGATCAAAGCGATACAAAAGGACA 463
|||||||||| || ||||| || |||||||| || ||||||||||| |||||||||| |
Sbjct 405 ATGAGCCTGAAATCAGAAAGCAAATGCTTCAAGACAAGATCAAAGCTCTACAAAAGGAGA 464
Query 464 GAGTAGACAAGCTCGTCACTACACTGAAAATCAAACTTGAACCATTCGTGGAAGGACAAA 523
| | |||||| |||| | ||||| |||||| |||||||||||| || || ||||||||||
Sbjct 465 GGGAAGACAAACTCGCCGCTACATTGAAAAACAAACTTGAACCGTTTGTAGAAGGACAAA 524
Query 524 CCGATGAATTTGTA-AATTGGGCCACCGCAGAGGCAAAACGGCTTTCAACAGCTGGTTTT 582
|| |||||||| | ||| |||| | || ||||||||| |||||||| | || ||||||
Sbjct 525 CCAATGAATTTATCGAAT-GGGCAAACGAAGAGGCAAAGCGGCTTTCTTCTGCCGGTTTT 583
Query 583 GGTGAGGCAATGCTTCACACAGTTGGTTACATTTACACTAGAAAAGCTGCTAAAGAACTC 642
|| ||||||||| | || || |||||||||||||||| |||||||||||||||||| ||
Sbjct 584 GGCGAGGCAATGATGCATACTCTTGGTTACATTTACACAAGAAAAGCTGCTAAAGAAATC 643
Query 643 GG-AAAGGATAAACGTT-TCATGAAAGTACCGTTTTTAGCCGAATGGGTTCGTGACAAAG 700
|| |||| | || || | | |||||||| ||||| ||||| |||||||| ||||||||||
Sbjct 644 GGTAAAG-ACAAGCGGTAT-ATGAAAGTGCCGTTCTTAGCGGAATGGGTGCGTGACAAAG 701
Query 701 GCCACCA-AGTAAAATCTCAAGTGATGGCTGCTTCTGGTGCGGT--CAACTTACTTCTGT 757
||||||| | | |||||||||||||||||||||||||||||||| || ||||||| ||
Sbjct 702 GCCACCATA-TGAAATCTCAAGTGATGGCTGCTTCTGGTGCGGTTTCA--TTACTTCAGT 758
Query 758 TGCAGGATGAAGTGAGCAAGCTGAAT---CAG---GGAGAGAACAAAGAAGAGAATATTC 811
||||||||||||||| |||| ||||| || |||||||||||||| ||| ||||||
Sbjct 759 TGCAGGATGAAGTGAACAAGTTGAATGAACACCAAGGAGAGAACAAAGAGGAGCATATTC 818
Query 812 AGAAAGCCATTGAAGCTAAAAAGGATGCAATGCTTCAATCCCTTTGGCAAATAAATGTTG 871
||||||||||||||||||||| |||||| | |||||||| ||||||||||| ||||||
Sbjct 819 AGAAAGCCATTGAAGCTAAAATGGATGCTTTACTTCAATCTCTTTGGCAAATCAATGTTC 878
Query 872 TTGACATCGAATCAAC-CTTATCTCGTGTCTGCCAAGCGGTGCTTAAAGATCCAAGTGTT 930
| ||||||||||| || || ||||||||| |||||| | || ||||||||||||||||||
Sbjct 879 TCGACATCGAATCCACGCT-ATCTCGTGTTTGCCAATCTGTTCTTAAAGATCCAAGTGTT 937
Query 931 TCAAAGGATGTTCTTCGAGCTAGAGCTAGAGGATTGAGGAAGCTGGGTAACGTT-TTCCA 989
|| |||||||||||||||||| | || | |||| ||| ||| || || |||| | |||||
Sbjct 938 TCCAAGGATGTTCTTCGAGCTCGTGCCATAGGACTGAAGAAACTTGG-AACGATCTTCCA 996
Query 990 GGGTTCTAAGAAAGC-GTATTCTAGAGAAAACAGCTTGCGTC 1030
|||| | ||||| || ||| | |||| || |||||||||||
Sbjct 997 GGGTGCCAAGAA-GCCGTACACGAGAGGAAGCAGCTTGCGTC 1037
> Ahg918615 jgi|Araly1|918615|Al_scaffold_0734_1
Length=573
Score = 896 bits (485), Expect = 0.0
Identities = 545/574 (95%), Gaps = 3/574 (1%)
Strand=Plus/Plus
Query 52 ATGGTGAAGGAGAGTGAGTACTACGACATATTAGGCGTCAAGATTGACGCCTCTGGTGCT 111
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGTGAAGGAGAGTGAGTACTATGACATATTAGGCGTCAAGATTGACGCGTCTGGTGCT 60
Query 112 GAGATTAAGAAAGCTTATTATGTTCAAGCAAGGCAAGTTCATCCAGACAAGAACCCTGGT 171
||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 61 GAGATTAAGAAGGCTTATTATGTTAAAGCAAGGCAAGTTCATCCAGACAAGAACCATGGT 120
Query 172 GATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTATCAAGTTC-TAGGCGA 230
|||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||
Sbjct 121 GATCCTCAAGCTGCTAAAAACTTTCAGATACTAGGTGAAGCTTACCAAGTTCTTA-GCGA 179
Query 231 TCCGGAGAAGCGTACAGCTTATGACAAATATGGAAAAGAAGGGGTTCAACAGGATGCAAT 290
|||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 180 TCCGGAGAAGCGAACAGCTTATGACAAATTTGGAAAACAAGGGGTTCAACAGGATGCAAT 239
Query 291 GGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTTGGTAGCGAGCTCTTTGAGGATTACGT 350
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 240 GGTTGATCCTGCAGCTGTGTTTGGTATGCTCTTTGGTAGCGAGCTCTTTGAGGAGTACGT 299
Query 351 TGGGCAACTTGCCCTTGCTTCAGCAGCCTCAATCGATGCTGAATTAGAATCGTATGAGCC 410
|||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 300 TGGGCAACTTGCACTTGCTTCAATAGCCTCAATCGATGCTGAATTAGAATCTTATGAGCC 359
Query 411 TGAGATTAGAAAACAGATGCTTCAGGAAAAGATCAAAGCGATACAAAAGGACAGAGTAGA 470
||||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||
Sbjct 360 TGAGATTAGAAAACAGATGCTTCGGGAAAAGATCAAAGCGATGCAAAACGATAGAGTAGA 419
Query 471 CAAGCTCGTCACTACACTGAAAATCAAACTTGAACCATTCGTGGAAGGACAAACCGATGA 530
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 420 CAAGCTCGTCGCTACACTGAAAATCAAACTCGAACCATTCGTGGAAGGACAAACTGATGA 479
Query 531 ATTTGTAAATTGGGCCACCGCAGAGGCAAAACGGCTTTCAACAGCTGGTTTTGGTGAGGC 590
|||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 480 ATTTGTGAACTGGGCCACCGCAGAGGCAAAACGGCTTTCTACAGCTGGTTTTGGTGAGGC 539
Query 591 AATGCTTCACACAG-TTGGTTACATTTACACTAG 623
|||||||||||| | |||| ||||||||||||||
Sbjct 540 AATGCTTCACACCGCTTGGATACATTTACACTAG 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46891187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5