BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39160.2
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490687 jgi|Araly1|490687|fgenesh2_kg.7__120__AT4G39160.1 2760 0.0
> Ahg490687 jgi|Araly1|490687|fgenesh2_kg.7__120__AT4G39160.1
Length=1844
Score = 2760 bits (1494), Expect = 0.0
Identities = 1735/1849 (94%), Gaps = 25/1849 (1%)
Strand=Plus/Plus
Query 156 CTTTGGTGAGAGGGAGAGTATTTGTGAAAGAAATCAATGGATTTAGATTTTGATGATCAA 215
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1 CTTTGGTGAGAGGGAGAGTATTTGTGAAACAAGTCAATGGATTTAGATTTTGATGATCAA 60
Query 216 CCCTCGGATCATGCTGCACCAGCAGTTAGGGCTGGTGCAAGGTTTAAACCAAAAGGCAGA 275
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCCTCGGATCACGCTGCACCAGCAGTTAGGGCTGGTGCAAGGTTTAAACCAAAAGGTAGA 120
Query 276 CCACAACCCAAGAAGAAGCAAGTCTCTCTTTCCACAACCCAAACAACACTCTC-CCCTGA 334
|||||| ||||||||||||||||||||||||| ||| |||| |||||| |||| || ||
Sbjct 121 CCACAATCCAAGAAGAAGCAAGTCTCTCTTTCAACATCCCAGACAACAATCTCTACC-GA 179
Query 335 TGTTGCCCAGGAAAAACTCTCAACACAAAGTGAAGATCTC-G-TCCCTCTAGACGGATCA 392
|| |||| ||||||||||||||||||||| ||||||| | | | || |||||||||||
Sbjct 180 TGCTGCCAAGGAAAAACTCTCAACACAAAACGAAGATC-CGGTTTCC-CTAGACGGATCG 237
Query 393 TCGGAGATTCCCAGCAATGCTTTACCTTCTGAGACTAATGTGCCGGATAGTGGAAGTATT 452
|||| ||||||||||||||||||||| |||||||||||| |||||||||||| || ||||
Sbjct 238 TCGGCGATTCCCAGCAATGCTTTACCCTCTGAGACTAATATGCCGGATAGTGAAACTATT 297
Query 453 AACAAATCTACCATTGGAACATTATCAGAAGAGAATGAAGATGCATTCCCAAGAGGGGTT 512
| ||||||||| | ||||||||||||||||||||||| ||||| |||||||| |||||||
Sbjct 298 ATCAAATCTACTACTGGAACATTATCAGAAGAGAATGTAGATGTATTCCCAAAAGGGGTT 357
Query 513 CATTGGTCTGTGAAACCATCTATTCTTCGTGCTTGTAATAACG-TGAATTTGGTGGGAAA 571
||||||||| || |||||||||||| |||||||||||||||| || |||||||||||||
Sbjct 358 CATTGGTCTACGAGACCATCTATTCTGCGTGCTTGTAATAACGTTG-ATTTGGTGGGAAA 416
Query 572 TAGACGTGATGATGGCATAGAGGCGACGACTTCATTTCCTGATGATCCTAGAACACAAGA 631
||| ||| |||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 417 AAGATGTGGTGATGGCATAGAGGCGGCGTCTTCATTTCCTGATGATCCCAGAACACAAGA 476
Query 632 TTCTGCAATATTTGGAGATTATGTTACTCCTGAAACCGGGGCAGACGAGGGTCGTGTGGA 691
|||| ||||||||||||||||||| |||||||||||| ||| |||||| |||| ||||||
Sbjct 477 TTCTACAATATTTGGAGATTATGTGACTCCTGAAACCTGGGAAGACGAAGGTCATGTGGA 536
Query 692 CATGGAAACTCTTGATATTGTACAGGAGGAAGGCACCACCAGTTCATATGTGCAACATAC 751
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CATGGAAACTCTTGATATTATACAGGAGGAAGGCACCACCAGTTCATATGTGCAACATAC 596
Query 752 TGGAAAGTTGCAACCAAAACCTAGATTACTCGAGACTGTGGTTGAAGAACCTGAGCCTCA 811
||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||
Sbjct 597 TGGAAAGTTGCAACCAAAACCTAGAATACTCGATACTGTGGTTGAAGAATCTGAGCCTCA 656
Query 812 TTACTCCGCTGGTGATACTGGTTATTTTCCAATGGGTACGAACGAGTCTGAGTTTATGGC 871
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 657 TTACTCCGCTGGTGATACTGGTTATTTTCCAATGGGTTCGAACGAGTCTGAGTTTATGGT 716
Query 872 CAATGTGGAATCAAGAAACGGTTTCAGTACTTATGAAGAT-CTTCAAGAAGAAGAACTTA 930
||||||||||||||||||||||||||||||||||| |||| | |||||||||||||| ||
Sbjct 717 CAATGTGGAATCAAGAAACGGTTTCAGTACTTATGGAGATAC-TCAAGAAGAAGAACATA 775
Query 931 ATATTCCTGAAGCCCCCAGAGAAACGGTTGGTGAGATGGAGGCGCAAAATGCTTCTGGCG 990
|||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||
Sbjct 776 ATATTCCTGAAGCCCCCAGAGAAATGGTTCATGAGATGGAGGCGCGAAATGCTTCTGGCG 835
Query 991 GATGGGAACAAGAAGAACAGGGTGTATCGCC-T-TGCATTAACAATACAGTTACAGGAGA 1048
|||||||||| |||||||||||||||||||| | |||| |||||||||||||| |||||
Sbjct 836 GATGGGAACACGAAGAACAGGGTGTATCGCCTTGTGCA--AACAATACAGTTACTGGAGA 893
Query 1049 AGAAGAAAATTGTATGGGGAATACAGTAGAAGAACAGTCT-AAAAGAGAAAGCAAAACTG 1107
||||||||||||| ||||||| |||||||||||||||||| ||| ||||||||||||||
Sbjct 894 AGAAGAAAATTGTTTGGGGAAAACAGTAGAAGAACAGTCTGGAAA-AGAAAGCAAAACTG 952
Query 1108 GAAAATCGAAGCGAGCTACTTCTCGAAAGCGGAAAAAGACAAGTGAAGAACCAAATAAGT 1167
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 GAAAATCGAAGAGAGCTACTTCTCGAAAGCGGAAAAAGACAAGTGAAGAACCAAATAAGT 1012
Query 1168 CTAGCGAAAAAACAGAGCAGAAGAAGTTCAAGCATTCAAGTCGTCGACAAAAAAGAACAC 1227
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CTAGCGAAAAAACAGAGAAGAAGAAGTTCAAGCATTCAAGTCGTCGACAAAAAAGAACAC 1072
Query 1228 TGGAGAAGGAATTGCTTGAAACCCCGGATCATGAAATCAGATCTCTGCCTCTTAGAGATA 1287
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1073 TGGAGAAGGAATTGCTTGAAACCCCGGATAATGAAATCAGATCTCTGCCTCTTAGAGATA 1132
Query 1288 TGCTTCGCCTTGTCGAATATAAAGAATGGATGCAGAAAAAGGAAGCAAAGGGAGCTGGTG 1347
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1133 TGCTTCGCCTTGTCGAATATAAAGAATGGATGGAGAAAAAGGAAGCAAAGGGAGCTGGTG 1192
Query 1348 TGCAACCTAGCCAAGAAAGTAATAATATGAACGGATCAGGGAGCCAGTATCATTCTCAAG 1407
||||||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||
Sbjct 1193 TGCAACCTAGCCAAGAAAG---TAATATGAATGCATCAGAGAGCCAGTATCATTCTCAAG 1249
Query 1408 GTTTTGACGAAGAAGATGAATTTGGTGACTTTGGTATAGAGTCGAGCGAATATCAAGAAA 1467
|||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1250 GTTTTGACGACGAAGATGAATTTGGTGAATTTGGTATAGAGTCGAGCGAAAATCAAGAAC 1309
Query 1468 ATAATGTAGTTAAACCGGATTCACCGGTTAACTATCAAACCTACATGAACAAGACTTCAA 1527
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 ATTATGTAGTTAAACCGGATTCACCGGTTAACTATCAAACCTACATGAACAAGACTTCAA 1369
Query 1528 GAACTCGATGGTCAAAGGAAGATACAGAACTCTTCTATGAGGGTATTCAAGAGTTTGGGA 1587
||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1370 GAACTAGATGGTCAAAGCAAGATACAGAACTCTTCTATGAGGGAATTCAAGAGTTTGGGA 1429
Query 1588 GCAATCTCTCGATGATACAACAGCTGTTTCCTGAGAGAACGCGTGAACAGATGAAGCTCA 1647
||||||| |||||||||||||||||||| ||| | |||||||||||||||||||||||||
Sbjct 1430 GCAATCTATCGATGATACAACAGCTGTTCCCTAATAGAACGCGTGAACAGATGAAGCTCA 1489
Query 1648 AATTCAAATTGGAGGAACGCCGAAATCCATTGAAGCTTAATGATGCATTATCAAGTCGCT 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AATTCAAATTGGAGGAACGCCGAAATCCATTGAAGCTTAATGATGCATTATCAAGTCGCT 1549
Query 1708 CAAAACATTTTACTCATTTCAAGAACGTGATTAAGAAGCTTCAACaagaagccgcggctg 1767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1550 CAAAACATTTTACTCATTTCAAGAACGTGATTAAGAAGCTTCAACAAGAAGCCGCGGCTG 1609
Query 1768 caaaagaaggcgaagaagaagaagaagctggagcagaagcagagaCAACTGATGTTCCCG 1827
||||||||| | |||||||||||||||||| |||| ||||||||| ||||||||||||
Sbjct 1610 CAAAAGAAG-CT--GAAGAAGAAGAAGCTGGAACAGAGGCAGAGACACCTGATGTTCCCG 1666
Query 1828 AGAATGAGGAGCCTGAGAAGTCTGAGGAGACGGAGCGAGCCAGTGATGGAGTAGCAGCTG 1887
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1667 AGAATGAGGAGCCGGAGAAGTCTGAGGAGACGGAGCGAGCCAGTGATGGAGGAGCAGCTG 1726
Query 1888 GAGTTAAGGAATCGGACGGTGGGGATGTTGAGAATGGCGTGAGATCGGACGGTGGAGATG 1947
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1727 GAGTTAAAGAATCGGACGGTGGGGATATTGAGAATGGCGTGAGATCGGACGGTGGAGATG 1786
Query 1948 AATGCGACGATGATGAAGAT--TTTT-GGAATTCTTATAAGAGTGACAT 1993
|||| || |||||||||||| |||| ||||||||||||||||||||||
Sbjct 1787 AATGTGAGGATGATGAAGATGATTTTTGGAATTCTTATAAGAGTGACAT 1835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79418160825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5