BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39170.1
Length=2277
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943887 jgi|Araly1|943887|scaffold_700116.1 3145 0.0
Ahg899419 jgi|Araly1|899419|Al_scaffold_0004_69 1254 0.0
> Ahg943887 jgi|Araly1|943887|scaffold_700116.1
Length=1890
Score = 3145 bits (1703), Expect = 0.0
Identities = 1825/1886 (97%), Gaps = 0/1886 (0%)
Strand=Plus/Plus
Query 235 TTTTGCTTCATTCGGAATCTTAAGATGTCAGGTCCCGTTGATCGATTCGCAATACCATGT 294
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 TTTTGCTTCATTCGGAATCTTAAGATGTCAGGTCATGTTGATCGATTCGCAATACCATGT 60
Query 295 TTTGAGGGAATATTGAGCAGTGATGAGAAAAAGGAAAGAAAGTCTGATTTTGAGAACTCA 354
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTTGAGGGAATATTGAGCAGTGATGAGAAAAAGGAAAGAAAGTCTGATTTTGAGAACTCG 120
Query 355 GAAGATGAGAGGAGAACAAGAATCGGTTCTTTGAAGAAGAAAGCAATCAATGCATCTACC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GAAGATGAGAGGAGAACAAGAATCGGTTCTTTGAAGAAGAAAGCAATCAATGCATCTACC 180
Query 415 AAGTTCAAGCATTCTCTCAAGAAAAAGAGAAGAAAAAGTGATGTCCGGGTCAGTTCTGTC 474
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 181 AAGTTCAAGCATTCTCTCAAGAAAAAGAGAAGAAAAAGTGATGTTCGGGTGAGTTCTGTC 240
Query 475 TCCATTGAGGATGTTCGTGATGTTGAGGAGCTTCAAGCGGTTGATGAGTTTAGACAAGCA 534
||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCATCGAAGATGTTCGTGATGTCGAGGAGCTTCAAGCGGTTGATGAGTTTAGACAAGCA 300
Query 535 TTGGTAATGGAGGAGTTGCTTCCCCATAAACACGATGACTATCATATGATGTTGAGGTTC 594
||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 301 TTGGTAATGGACGAGTTGCTTCCCCATAAACACGATGACTATCACATGATGCTGAGGTTC 360
Query 595 TTGAAGGCTAGGAAATTCGACATTGAGAAAGCTAAGCACATGTGGGCTGATATGATCCAG 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGAAGGCTAGGAAATTCGACATTGAGAAAGCTAAGCACATGTGGGCTGATATGATCCAG 420
Query 655 TGGAGGAAGGAATTTGGTACCGACACTATTATTCAGGATTTTCAGTTTGAAGAGATTGAT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGGAGGAAGGAATTTGGTACCGACACTATTATTCAGGATTTTCAGTTTGAAGAGATTGAT 480
Query 715 GAAGTTCTGAAATATTACCCGCACGGTTATCACAGTGTAGATAAAGAAGGCAGGCCTGTG 774
|| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 481 GATGTTCTGAAATATTACCCGCACGGTTACCACAGCGTTGATAAAGAAGGCAGGCCTGTG 540
Query 775 TATATTGAAAGGCTTGGGAAAGTTGATCCTAACAAACTGATGCAAGTTACTACGCTTGAT 834
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 TATATTGAAAGGCTAGGGAAAGTTGATCCTAACAAACTGATGCAAGTTACTACCCTTGAT 600
Query 835 CGATATATTAGATATCATGTTAAGGAGTTCGAGAGGAGTTTTATGCTCAAGTTTCCTGCC 894
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601 CGATATATAAGATATCATGTTAAGGAGTTCGAGAGGAGTTTTATGATCAAGTTTCCTGCC 660
Query 895 TGCACTATTGCTGCCAAGAAGTATATTGATTCAAGCACAACTATTTTGGACGTCCAAGGA 954
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 661 TGCACAATTGCTGCCAAGAAGTATATTGATTCAAGCACCACTATTTTGGACGTCCAAGGA 720
Query 955 GTGGGACTGAAGAACTTCACAAAGTCTGCTCGTGAGCTTATTACAAGGTTGCAGAAGATT 1014
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 GTGGGGCTGAAGAACTTCACAAAGTCTGCTCGTGAGCTTATTACACGGTTGCAGAAGATT 780
Query 1015 GATGGAGACAATTATCCTGAGACCCTCCACCAAATGTTTATCATCAATGCAGGGCCCGGA 1074
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 781 GATGGGGACAATTATCCTGAGACCCTCCACCAAATGTTTATCATCAATGCAGGGCCAGGA 840
Query 1075 TTCCGTCTGCTTTGGAGCACTGTCAAGAGTTTTCTAGACCCCAAAACGACTTCTAAGATT 1134
||||| ||||||||||||||||| || || ||||||||||||||||| ||||||||||||
Sbjct 841 TTCCGCCTGCTTTGGAGCACTGTGAAAAGCTTTCTAGACCCCAAAACAACTTCTAAGATT 900
Query 1135 CATGTACTCGGCTGCAAGTATCAGAGTAAATTGCTTGAGATTATTGATTCCAGCGAGTTG 1194
||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 901 CATGTACTCGGATACAAGTATCAGACTAAATTGCTTGAGGTTATTGATTCCAGCGAGTTG 960
Query 1195 CCTGAATTCTTGGGAGGGGCTTGTACCTGCGCAGATCAGGGGGGTTGTATGCTTTCTGAT 1254
||||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||
Sbjct 961 CCTGAATTCTTGGGAGGTGCATGTACTTGCGCAGATCAGGGTGGTTGTATGCTTTCTGAT 1020
Query 1255 AAAGGGCCTTGGAAGAATCCAGAGATTGTAAAGATGGTACTTCATGGGGGAGCTCACCGT 1314
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAGGGCCTTGGAAAAATCCAGAGATTGTAAAGATGGTACTTCATGGGGGAGCTCACCGT 1080
Query 1315 GCGAAGCAGGTGGTGAAAGTTCTGAACAGCGACGGGAAAGTCATTGCTTATGCTAAGCCG 1374
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1081 GCGAAGCAGGTGGTGAAAGTTCTTAACAGCGAGGGGAAAGTCATTGCTTATGCTAAGCCG 1140
Query 1375 TCTTATCCATGGATAAAAGGAAGTGACACATCAACTGCAGAATCAGGTTCTGAAGCTGAA 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TCTTATCCATGGATAAAAGGAAGTGACACATCAACTGCAGAATCAGGTTCTGAAGCTGAA 1200
Query 1435 GATATTGTTGTGTCTCCAAAAGCAGTAAAGAGTTATTCCCATCTCCGCTTGACCCCTGTT 1494
||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1201 GATATCGTTGTGTCTCCAAAAGCAGTAAAGAGTTATACCCATCTCCGCTTGACCCCTGTT 1260
Query 1495 CGTGAAGAGGCAAAGGTTGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTAT 1554
|||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1261 CGTGAAGAGGTAAAGGTAGGCTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTAT 1320
Query 1555 GATGAGTATGTTCCAATGGTTGACAAAGCTGTTGACGCCACCTGGAAGGTTAAACCCACC 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GATGAGTATGTTCCAATGGTTGACAAAGCTGTTGACGCCACCTGGAAGGTTAAACCCACC 1380
Query 1615 GCCATCAACCGGGCTCCTTCTAAAGGAGCTCATATGCCTCCAAATGTCCCAAAGGATCAT 1674
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GCCATCAACAGGGCTCCTTCTAAAGGAGCTCATATGCCTCCAAATGTCCCAAAGGATCAT 1440
Query 1675 GAAAGCTTCAGTGCTCGTGTCCTAGTAACTTTCATGGCTTTTGTGATGGCGATTCTCACA 1734
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 1441 GAAAGCTTCAGTGCTCGAGTCCTAGTAATTTTCATGGCTTTTGTGATGGCGATTCTCACA 1500
Query 1735 TTCTTCCGTACAGTATCAAACCGTGTTGTGACCAAGCAGCTTCCACCGCCTCCTAGCCAA 1794
|||||||| ||||||||| |||||||||||| |||||||||||||| |||| | ||||||
Sbjct 1501 TTCTTCCGCACAGTATCATACCGTGTTGTGATCAAGCAGCTTCCACTGCCTACAAGCCAA 1560
Query 1795 CCGCAAATTGAAGGAAGCGCTGCTGCAGAGGAAGCTGATCTCCTCAATTCAGTGCTGAAG 1854
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1561 CCGCAAATTGAAGGAAGCGCTGCTACAGAGGAAGCTGATCTCCTCAATTCAGTGCTGAAG 1620
Query 1855 AAATTAACCGAACTTGAGGAGAAAATTGGAGCGCTCCAGTCAAAGCCATCTGAGATGCCT 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 AAATTAACCGAACTTGAGGAGAAAATTGGAGCGCTCCAGTCAAAGCCATCTGAGATGCCT 1680
Query 1915 TATGAGAAAGAGGAACTGCTTAATGCAGCTGTCTGCCGTGTAGACGCCCTTGAAGCTGAG 1974
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1681 TATGAGAAAGAGGAACTGCTTAATGCAGCTGTCTGCCGTGTAGACGCCCTTGAAGCCGAG 1740
Query 1975 CTCATAGCCACTAAGAAGGCTCTTTATGAAGCTCTGATGAGACAAGAAGAATTACTCGCT 2034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 CTCATAGCCACTAAGAAGGCTCTTTATGAAGCTCTGATGAGACAAGAAGAATTACTCGCT 1800
Query 2035 TACATTGACCGTCAAGAGGCAGCTCAGCACCagaagaagaataagaggaagcaaatgttc 2094
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1801 TACATTGACCGTCAAGAGGCAGCTCAGCACCAGAAGAAGAAGAAGAGGAAGCAAATGTTC 1860
Query 2095 tgtttctagaagatgaagaagaagaa 2120
||||||||||||| | || |||||||
Sbjct 1861 TGTTTCTAGAAGAAGGAGGAGAAGAA 1886
> Ahg899419 jgi|Araly1|899419|Al_scaffold_0004_69
Length=1794
Score = 1254 bits (679), Expect = 0.0
Identities = 1147/1368 (84%), Gaps = 52/1368 (4%)
Strand=Plus/Plus
Query 442 AGAAGAAAAAGTGA-TGTCCGGGTCAGTTCTGTCTCCATTGAGGATGTTCGTGATGTTGA 500
|||||||||||||| || || || ||||||||||||||||||||||| || ||||| ||
Sbjct 70 AGAAGAAAAAGTGACGGT-CGAGTGAGTTCTGTCTCCATTGAGGATGTGCGGGATGTCGA 128
Query 501 GGAGCTTCAAGCGGTTGATGAGTTTAGACAAGCATTGGTAATGGAGGAGTTGCTTCCCCA 560
|||||| || || ||||| | |||| ||||| ||||| ||||||| ||||||||||| |
Sbjct 129 GGAGCTACAGGCTGTTGACGCGTTTCGACAATCATTGTTAATGGACGAGTTGCTTCCGGA 188
Query 561 TAAACACGATGACTATCATATGATGTTGAGGTTCTTGAAGGCTAGGAAATTCGACATTGA 620
| ||||||||||||||| |||||||||||||||||||| || |||||||| ||||||||
Sbjct 189 GAGACACGATGACTATCACATGATGTTGAGGTTCTTGAAAGCAAGGAAATTTGACATTGA 248
Query 621 GAAAGCTAAGCACATGTGGGCTGATATGATCCAGTGGAGGAAGGAATTTGGTACCGACAC 680
|||||||||||| ||||||||||||||||| || ||||||||||| |||||||| |||||
Sbjct 249 GAAAGCTAAGCAGATGTGGGCTGATATGATTCAATGGAGGAAGGAGTTTGGTACTGACAC 308
Query 681 TATTATTCAGGATTTTCAGTTT-GAAGAGATTGATGAAGTTCTGAAATATTACCCGCACG 739
|||||||||||||||| | ||| ||||||||| |||||||| ||||||||||||||||
Sbjct 309 TATTATTCAGGATTTTGA-TTTCGAAGAGATTAATGAAGTTTTGAAATATTACCCGCAAT 367
Query 740 GTTATCACAGTGTAGATAAAGAAGGCAGGCCTGTGTATATTGAAAGGCTTGGGAAAGTTG 799
|||||||| |||| || ||||||||||| ||| | || ||||||||||| ||||||||||
Sbjct 368 GTTATCACGGTGTTGACAAAGAAGGCAGACCTATTTACATTGAAAGGCTAGGGAAAGTTG 427
Query 800 ATCCTAACAAACTGATGCAAGTTACTACGC-TTGATCGATATATTAGATATCATGTTAAG 858
||||||||| ||| ||||||||||| | || | |||||||| | ||||||||||| |||
Sbjct 428 ATCCTAACAGACTCATGCAAGTTAC-AAGCATGGATCGATACGTAAGATATCATGTAAAG 486
Query 859 GAGTTCGAGAGGAGTTTTATGCTCAAGTTTCCTGCCTGCACTATTGCTGCCAAGAAGTAT 918
|||||||| ||||| |||||| ||||||||||| ||||||| || ||||| |||| | ||
Sbjct 487 GAGTTCGAAAGGAGCTTTATGATCAAGTTTCCTTCCTGCACAATCGCTGCAAAGAGGCAT 546
Query 919 ATTGATTCAAGCACAACTATT-TTGGACGTCCAAGGAGTGGGACTGAAGAACTTCACAAA 977
|| ||||| || ||||||||| || || || || ||||||||| |||| ||||| || ||
Sbjct 547 ATCGATTCGAGTACAACTATTCTT-GATGTTCAGGGAGTGGGATTGAAAAACTTTACCAA 605
Query 978 GTCTGCTCGTGAGCTTATTACAAGGTTGCAGAAGATTGATGGAGACAATTATCCTGAGAC 1037
||||||||| || ||||| || | || || |||||||||||||||||||||||||||||
Sbjct 606 GTCTGCTCGGGATCTTATCACGCGATTACAAAAGATTGATGGAGACAATTATCCTGAGAC 665
Query 1038 CCTCCACCAAATGTTTATCATCAATGCAGGGCCCGGATTCCGTCTGCTTTGGAGCACTGT 1097
||||||||||||||||| |||||||||||||| ||||| | || || |||| ||||||
Sbjct 666 TCTCCACCAAATGTTTATTATCAATGCAGGGCCTGGATTTAGGCTACTCTGGAACACTGT 725
Query 1098 CAAGAGTTTTCTAGACCCCAAAACGA-CTTCTAAGATTCATGTACTCGGCTGCAAGTATC 1156
||||| ||||||||||| ||||| | || ||||||||||||| ||||| | ||||||||
Sbjct 726 GAAGAGCTTTCTAGACCCAAAAAC-ATCTGCTAAGATTCATGTCCTCGGATACAAGTATC 784
Query 1157 AGAGTAAATTGCTTGAGATT-ATTGAT-TCCAGCGAGTTGCCTGAATTCTTGGGAGGGGC 1214
||| ||||||||||| | | |||||| || | ||||||||||| ||||||||||| ||
Sbjct 785 TGAGCAAATTGCTTGA-AGTCATTGATGTCAAT-GAGTTGCCTGAGTTCTTGGGAGGTGC 842
Query 1215 TTGTACCTGCGCAGATCAGGGGGGTTGTATGCTTTCTGATAAAGGG-CCTTGGAAGAATC 1273
||||| ||| ||||||| || ||||| ||||||||||| || ||| |||||||| || |
Sbjct 843 ATGTACTTGCTCAGATCAAGGCGGTTGCATGCTTTCTGACAA-GGGACCTTGGAAAAACC 901
Query 1274 CAGAGATTGTAAAGATGGTACTTCATGGGGGAGCTCACCGTGCGAAGCAGGTGGTGAAAG 1333
| || ||||| |||||||| |||||||| ||||| || || |||| ||||||||||||||
Sbjct 902 CGGAAATTGTGAAGATGGTGCTTCATGGAGGAGCACATCGAGCGAGGCAGGTGGTGAAAG 961
Query 1334 TTCTGAACAGCGACGGGAAAGTCATTGCTTATGCTAAGCCGTCTTATCCATGGATAAAAG 1393
|| |||||||||| |||||||||||||||||||| || || || |||||||||||||| |
Sbjct 962 TTTTGAACAGCGAAGGGAAAGTCATTGCTTATGCAAAACCTTCATATCCATGGATAAAGG 1021
Query 1394 GAAGTGACACATCAACTGCAGAATCAGGTTCTGAAGCTGAAGATATTGTTGTGTCTCCAA 1453
|||||||||| || |||||||| ||||| ||||| ||||||||||| | || |||||||
Sbjct 1022 GAAGTGACACTTCCACTGCAGAGTCAGGATCTGACGCTGAAGATATCG--GT-TCTCCAA 1078
Query 1454 AAGC-AGTAAAGAGTTAT-TCCCATCTCCGCTTGACCCCTGTTCGTGAAGAGGCAAAGGT 1511
| || | ||| ||||| | || |||||||||||||| ||||||||||| ||||||||| |
Sbjct 1079 AGGCTA-TAATGAGTT-TCTCTCATCTCCGCTTGACACCTGTTCGTGAGGAGGCAAAGAT 1136
Query 1512 TGGTTCTGGTGAAACGAGTTTTGCCGGTAGTTTTGCAGGTTATGATGAGTATGTTCCAAT 1571
| |||||||||| || || || ||||||||| | ||||||||||||||||| |||||
Sbjct 1137 AG---CTGGTGAAACAAGCTTGGCTGGTAGTTTTCCGGGTTATGATGAGTATGTACCAAT 1193
Query 1572 GGTTGACAAAGCTGTTGACGCCACCTGGAAGGTTAAACCCACCGCCAT-CA-ACCG-GGC 1628
|||||||||||| || ||||| ||||||||||| |||||| ||||| || | | |||
Sbjct 1194 GGTTGACAAAGCCGTCGACGCAACCTGGAAGGTGAAACCC---GCCATTCAGAGAGTGGC 1250
Query 1629 TCCTTCTAA-AGGAGCTCATA-TGCCTCCAA--ATGTCCCAAAGGATCATGAAAGCTTCA 1684
| | | || ||||||| || || |||| | || ||| |||||||| |||| || |||
Sbjct 1251 -C-T-C-AAGAGGAGCTT-TAATGTCTCCCACCAT-TCC-AAAGGATCCTGAAGGCATCA 1303
Query 1685 -GTGCTCGTGTCCTAGTAACT-TTCATGGCTTT-TGTGATGGCGATTCTCACATTCTTCC 1741
| ||||| |||||||||| | |||||||| || | |||||||| || |||||||||| |
Sbjct 1304 AG-GCTCGAGTCCTAGTAA-TGTTCATGGCATTCT-TGATGGCGGTTTTCACATTCTTTC 1360
Query 1742 GTACAGTATCAAACCGTGTTGTGACCAAGCAGCTTCCACCGCCTCCTA 1789
| |||||||| ||||||| | |||||| | |||||| || || |||
Sbjct 1361 GCACAGTATCTTACCGTGT-G--ACCAAGAATCTTCCAGCGACTACTA 1405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85741141495
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5