BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39180.1
Length=2321
Score E
Sequences producing significant alignments: (Bits) Value
Ahg943888 jgi|Araly1|943888|scaffold_700117.1 2693 0.0
Ahg481021 jgi|Araly1|481021|fgenesh2_kg.4__81__AT2G21540.1 950 0.0
Ahg944233 jgi|Araly1|944233|scaffold_700462.1 453 3e-126
Ahg938886 jgi|Araly1|938886|scaffold_503077.1 213 5e-54
Ahg888531 jgi|Araly1|888531|Al_scaffold_0007_517 115 1e-24
> Ahg943888 jgi|Araly1|943888|scaffold_700117.1
Length=1696
Score = 2693 bits (1458), Expect = 0.0
Identities = 1619/1696 (95%), Gaps = 13/1696 (1%)
Strand=Plus/Plus
Query 412 AGGACTTTAAATCATGGCGGATACAATGGTTGCTCATATGGACCGACATAATAAGATAGA 471
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 8 AGGACTTTAAATCATGGCGGATACAATGGTTGCTCATTTGGATCGACATAATAAGATAGA 67
Query 472 TGTTGAGATCTCAGAAGATGACAAGAGATTAACAAAGCTTTGCTCTCTAAAGAAGAAGGC 531
||||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||
Sbjct 68 TGTTGAGATCTCAGAAGATGATAACAGATTAACAAAACTTTGCTCTCTGAAGAAGAAGGC 127
Query 532 TATAAATGCGACGAACAAGTTTAAGCACTCAATGACCAAGAAAGGTCGAAGGCATAGCCG 591
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 128 AATAAATGCGACGAACAAGTTTAAGCACTCCATGACCAAGAAAGGTCGAAGGCATAGCCG 187
Query 592 TGTGGCGTGTGTCTCAATCGTCGATGAAATCGATACAGAAGAGTTGCAAGCGGTTGATGC 651
||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||
Sbjct 188 TGTGGCGTGTGTCTCAATCGTTGATGAAATCGATACGGAAGAGCTGCAAGCGGTTGATGC 247
Query 652 TTTCCGTCAAGCTCTTATTTTAGACGAACTACTTCCCTCTAAGCATGATGATCATCACAT 711
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 248 TTTCCGTCAAGCTCTTATTTTAGACGAACTACTTCCTTCTAAACACGATGATCATCACAT 307
Query 712 GATGCTTAGGTTCTTGAGGGCAAGAAAGTTTGATCTCGAAAAGGCTAAGCAAATGTGGTC 771
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
Sbjct 308 GATGCTTAGGTTCTTGAGGGCAAGAAAGTTTGATCTCGAAAAGGCGAAGCATATGTGGGC 367
Query 772 TGATATGCTTAACTGGAGGAAAGAATATGGCGCAGACACGATCATGGAGGACTTTGATTT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TGATATGCTTAACTGGAGGAAAGAATATGGCGCAGACACGATCATGGAGGACTTTGATTT 427
Query 832 CAAAGAAATCGAAGAAGTGGTTAAGTATTATCCACAAGGATATCATGGTGTTGACAAGGA 891
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 428 CAAAGAAATCGACGAAGTGGTTCAGTATTATCCACAAGGATATCATGGTGTTGACAAGGA 487
Query 892 AGGAAGACCTATCTATATTGAGAGGCTAGGCCAAGTTGATGCCACAAAGCTGATGAAAGT 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 AGGAAGACCTATCTATATTGAGAGGCTAGGCCAAGTTGATGCCACAAAGCTGATGAAAGT 547
Query 952 GACCACAATTGATAGGTACGTGAAGTACCATGTGAAAGAGTTCGAGAAGACTTTCAACGT 1011
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 548 GACCACAATTGATAGGTATGTGAAGTACCATGTCAAAGAGTTCGAGAAGACTTTCAACGT 607
Query 1012 CAAATTCCCTGCTTGTTCCATCGCTGCGAAACGACACATTGATCAGAGCACAACGATCTT 1071
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 608 CAAATTCCCGGCTTGTTCCATCGCTGCGAAAAGACACATTGATCAGAGCACAACGATCTT 667
Query 1072 GGATGTTCAAGGCGTGGGGCTTAGTAACTTCAACAAAGCTGCAAAAGATCTTCTTCAGAG 1131
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 668 GGATGTTCAAGGCGTGGGGCTTAATAACTTCAACAAAGCTGCAAAAGATCTTCTTCAGAG 727
Query 1132 TATTCAGAAAATCGACAACGATAACTACCCTGAGACGCTGAACCGTATGTTCATCATCAA 1191
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 728 TATTCAGAAAATCGACAACGATAACTACCCGGAGACGCTGAACCGTATGTTCATCATCAA 787
Query 1192 TGCTGGTTGTGGGTTTAGGCTTTTATGGAACACAGTGAAATCTTTCCTTGACCCAAAGAC 1251
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 788 TGCTGGTTATGGGTTTAGGCTTTTATGGAGCACAGTGAAATCTTTCCTTGACCCAAAGAC 847
Query 1252 TACAGCAAAGATTCACGTTCTTGGCAACAAATACCAAACCAAACTTCTAGAAATCATTGA 1311
|||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 848 TACAGCGAAGATTCACGTTCTTGGCAACAAATACCAAAGCAAACTGCTAGAAATCATTGA 907
Query 1312 CGCCAATGAACTGCCTGAGTTCTTGGGTGGTAAGTGCACCTGCGCAGACAAAGGTGGATG 1371
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 GGCCAATGAACTGCCTGAGTTCTTGGGTGGTAAGTGCACCTGCGCAGACAAAGGTGGATG 967
Query 1372 TATGCGTTCAGACAAAGGTCCATGGAACGACCCTGAGATCTTCAAGTTGGTTCAGAACGG 1431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TATGCGTTCAGACAAAGGTCCATGGAACGACCCTGAGATCTTCAAGTTGGTTCAGAACGG 1027
Query 1432 TGAAGGTAGATGCCTGCGAAGGAGCTTGTCAGGGATCGAGGAAAAGACAATCTTTGAGTA 1491
|||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1028 TGAAGGGAGATGCCTGCGGAGGAGCTTGTCAGGGATCGAGGAAAAGACAATCTCTGAGTA 1087
Query 1492 TAACAACGAAACAAAGAAGAAATGCGAACCAGAAGAGACTCACAAGCAATCTGCTGCGGA 1551
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1088 TAACAACGAAACAAAGAAGAAATGCGAACCAGACGAGACTTACAAGCAATCTGCTGCGGA 1147
Query 1552 GATGGAGAAGAAGTTCATCGACACGAATGTGGATGCTGCAGCGGCTGCTGATTGGCCTAC 1611
|| |||||||||||||||||||| ||||||||||||||| || ||||||||||
Sbjct 1148 GAAGGAGAAGAAGTTCATCGACAAGAATGTGGATGCTGC------TG---ATTGGCCTAC 1198
Query 1612 AAAGCTTAACAAGGCTGaaaaa-aaCCCTACCGACCTTAAAGATGTGTACTCAGCTGTGA 1670
|||| || |||||||| || || ||| ||||||| ||||||||||||||||| |||||||
Sbjct 1199 AAAGATTCACAAGGCT-AACAACAACTCTACCGAGCTTAAAGATGTGTACTCGGCTGTGA 1257
Query 1671 ATCCGTTGGAGAGGAAAGGGTACTTATATGGCAGCGTCATGGCATTGCTAATGGGGATAG 1730
||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1258 ATCCGTTGGAGAGGAGAGGGTACTTATATGGAAGCGTGATGGCATTGCTAATGGGGATAG 1317
Query 1731 TGGGAGTGATGAGGCTAACCAAGAACATGCCAAGGAGGCTCACCGAGGCAAATGTTTATA 1790
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||
Sbjct 1318 TGGGAGTGATGAGGCTAACCAAGAACATGCCAAGGAAGCTCACCGAGGCAAATGTGTATA 1377
Query 1791 GCCGTGAAGGCAGCGCCGTCTACCAGGACGGAGTGACTGTTATGTCGAAGCAGGAGTATA 1850
|||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1378 GCCGCGAAGGCAGCGCCGTGTACCAGGACGGAGTGACTGTTATGTCGAGGCAGGAGTATA 1437
Query 1851 TTGCGATGGTGAAGAAGATAACAGATCTTGAGGAGAAATGTAAGTCCATGGAAGCTCAGG 1910
| |||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||
Sbjct 1438 TGGCGATGGTGAAGAAAATGACAGATCTCGAGGAGAAGTGTAAGTCCATGGAAGCTCAGG 1497
Query 1911 CTGCGTTTT-ATATGGAGAGGGAGAAGACTCTAGACGCTGCACTTCGTCGTATTGACCAG 1969
||||||||| | ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1498 CTGCGTTTTCAC-TGGAGAGGGAGAAGATTCTAGACGCTGCACTTCGTCGTGTTGACCAG 1556
Query 1970 CTCGAGCTTCAGTTGTCTGAAACCAACAAGGCACTAGACGAGACAATGACGAGGCAACAT 2029
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1557 CTCGAGCTTCAGTTGTCTGAAACCAACAAGGCACTGGACGAGACAATGACGAGGCAACAT 1616
Query 2030 GAGATAATGGCTTTCATCGAGAAGAAAAAGAAGAAGAAGCGGAAGTTCTTATTATTCTAG 2089
||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1617 GAGATAATGGCTTACATCGAGAAGAAAAAGAAGAAGAAGAGAAAGTTCTTATTATTCTAG 1676
Query 2090 AAGACTGCATCAGAGG 2105
||||||||||||||||
Sbjct 1677 AAGACTGCATCAGAGG 1692
> Ahg481021 jgi|Araly1|481021|fgenesh2_kg.4__81__AT2G21540.1
Length=2055
Score = 950 bits (514), Expect = 0.0
Identities = 902/1087 (83%), Gaps = 35/1087 (3%)
Strand=Plus/Plus
Query 414 GACTTTAAATCATGGCGGATACAATGGT-TGCTCATATGGACCGACATAATAAGATAGAT 472
|||| |||| |||| |||||||||| || | |||||||||| |||||||||||| |||||
Sbjct 165 GACTATAAAGCATGACGGATACAAT-GTCTACTCATATGGATCGACATAATAAGCTAGAT 223
Query 473 GT-TGA-GATCTCAGAAGATGACAAGAGATTA-ACAAAGCTTTGCT-CTCTAAAGAAGAA 528
| ||| | ||| || ||||| || ||| | ||||||||||| | || | ||||||||
Sbjct 224 -TATGATG-GCTCGGAGGATGA-AA-AGA--AGACAAAGCTTTGTTCCT-TGAAGAAGAA 276
Query 529 GGCTATAAATGCGACGAACAAGTTTAAGCACTCAATGACCAAGA-AAGGTCGAAGGCATA 587
|| || ||||| | ||||| || || ||||| | ||||||| || ||||||| | |
Sbjct 277 AGCAATCAATGCCTCCAACAAATTCAAACACTCTTTCACCAAGAGAA-CTCGAAGGAACA 335
Query 588 GCCGTGTGGCGTGTGTCTCAATCGTCGATGAAATCGATAC-AGAAGAG-TTGCAAGCGGT 645
|||| || || |||||| ||||| || || || ||| | |||||| || ||||| ||
Sbjct 336 GCCGAGTCATGTCTGTCTCTATCGTTGACGACATTGAT-CTTGAAGAGCTT-CAAGCTGT 393
Query 646 TGATGCTTTCCGTCAAGCTCTTATTTTAGACGAACTACTTCCCTCTAAGCATGATGATCA 705
||| |||||||||||||||||||| || ||||| || ||||| || || || ||||||||
Sbjct 394 TGACGCTTTCCGTCAAGCTCTTATCTTGGACGAGCTCCTTCCTTCGAAACACGATGATCA 453
Query 706 TCACATGATGCTTAGGTTCTTGAGGGCAAGAAAGTTTGATCTCGA-AAAGGCTAAGCAAA 764
|||||||||||||||||| ||||||||||| ||||||||||| || ||| || |||||||
Sbjct 454 TCACATGATGCTTAGGTTTTTGAGGGCAAGGAAGTTTGATCTTGACAAA-GCAAAGCAAA 512
Query 765 TGTGGTCTGATATGCTTAACTGGAGGAAAGAATATGGCGCAGACACGATCATGGAGGACT 824
||||| |||||||| | | ||||||||||| | ||| | ||||| |||||||||||||
Sbjct 513 TGTGGACTGATATGATCCATTGGAGGAAAGAGTTTGGTGTTGACACAATCATGGAGGACT 572
Query 825 TTGATTTCAAAGAAATCGAAGAAGTGGTTAAGTATTATCCACAAGGATATCATGGTGTTG 884
|||||||||| ||||| || ||||| | ||||| ||||| ||||| || ||||||||||
Sbjct 573 TTGATTTCAAGGAAATAGACGAAGTCCTCAAGTACTATCCTCAAGGTTACCATGGTGTTG 632
Query 885 ACAAGGAAGGAAGACCTATCTATATTGAGAGGCTAGGCCAAGTTGATGCCACAAAGCTGA 944
|||| || ||||| ||| | || || ||||||||||||||||| ||||||||||||||||
Sbjct 633 ACAAAGAGGGAAGGCCTGTTTACATAGAGAGGCTAGGCCAAGTGGATGCCACAAAGCTGA 692
Query 945 TGAAAGTGACCACAATTGATAGGTACGTGAAGTACCATGTGAAAGAGTTCGAGAAGACTT 1004
|| |||| || || || |||||||| || ||||||||||||| |||||| ||||||||||
Sbjct 693 TGCAAGTCACTACCATCGATAGGTATGTCAAGTACCATGTGAGAGAGTTTGAGAAGACTT 752
Query 1005 TCAACGTCAAATTCCCTGCTTGTTCCATCGCTGCGAA-ACGACACATTGATCAGAGCACA 1063
|||| ||||||| || ||||| ||||| ||||| || | | || ||||||||||||||
Sbjct 753 TCAATATCAAATTACCAGCTTGCTCCATTGCTGCCAAGAAG-CATATTGATCAGAGCACC 811
Query 1064 ACGATCTTGGATGTTCAAGGCGTGGGGCTT--AGTAACTTCAACAAAGCTGCAAAAGATC 1121
|| ||||||||||| |||||||||||| || || ||||||| || ||||||| ||||
Sbjct 812 ACCATCTTGGATGTGCAAGGCGTGGGG-TTGAAG-AACTTCAGTAAGGCTGCAAGGGATC 869
Query 1122 TTCTTCAGAGTATTCAGAAAATCGACAACGATAACTACCCTGAGACGCTGAACCGTATGT 1181
|||||||| |||| ||||| ||||| | ||| |||||||||||||| ||||||||||||
Sbjct 870 TTCTTCAGCGTATCCAGAAGATCGATAGCGACAACTACCCTGAGACATTGAACCGTATGT 929
Query 1182 TCATCATCAATGCTGGTTGTGGGTTTAGGCTTTTATGGAACACAGTGAAATCTTTCCTTG 1241
|||| ||||| ||||||| ||| || |||||| | |||| ||| ||||||||||||||||
Sbjct 930 TCATTATCAACGCTGGTTCTGGATTCAGGCTTCTGTGGAGCACTGTGAAATCTTTCCTTG 989
Query 1242 ACCCAAAGACTACAGCAAAGATTCACGTTCTTGGCAACAAATACCAAACCAAACTTCTAG 1301
|||||||||| || |||||||| |||||||||||||||||||| |||| ||| ||||| |
Sbjct 990 ACCCAAAGACCACCGCAAAGATCCACGTTCTTGGCAACAAATATCAAAGCAAGCTTCTTG 1049
Query 1302 AAATCATTGACGCCAATGAACTGCCTGAGTTCTTGGGTGGTAAGTGCACCTGCGCAGACA 1361
| || || ||| |||||||||| |||||||||||||||||||| ||||| || |||||||
Sbjct 1050 AGATTATCGACTCCAATGAACTTCCTGAGTTCTTGGGTGGTAACTGCACTTGTGCAGACA 1109
Query 1362 AAGGTGGATGTATGCGTTCAGACAAAGGTCCATGGAACGACCCTGAGATCTTCAAGTTGG 1421
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1110 AAGGTGGGTGTATGCGTTCAGACAAAGGTCCATGGAACGACCCTGACATCTTCAAGATGG 1169
Query 1422 TTCAGAACGGTGAAGGTA-GATGCCTGCGAAGGA-G-C-TTGTCAGGGATCGAGGAAAAG 1477
|||| ||||| ||||| | | |||| | ||||| | | |||||| || || || |||
Sbjct 1170 TTCAAAACGGAGAAGGGAAG-TGCC--C-AAGGAAGACATTGTCAAACATTGAAGAGAAG 1225
Query 1478 ACAATCT 1484
|||||||
Sbjct 1226 ACAATCT 1232
> Ahg944233 jgi|Araly1|944233|scaffold_700462.1
Length=1672
Score = 453 bits (245), Expect = 3e-126
Identities = 636/822 (77%), Gaps = 38/822 (5%)
Strand=Plus/Plus
Query 632 GAGTTGCAAGCGGTTGATG-CTTTCCGTCAAGCTCTTATTTTAGACGAACTACTTCCC-T 689
|||||| |||| ||||||| |||| || ||| | |||||| | || || |||| ||||
Sbjct 174 GAGTTGAAAGCCGTTGATGCCTTT-CGCCAATCGCTTATTCTCGATGAGCTAC-TCCCGG 231
Query 690 CTAAGCATGATGATC-ATCACATGATGCTTAGGTTCTTGAGGGCAAGAAAGTTTGATCTC 748
|| || || || | | || ||||||||||| || |||| ||||||||| ||||||||
Sbjct 232 AGAAACACGACGA-CTACCATATGATGCTTAGATTTTTGAAGGCAAGAAAATTTGATCTT 290
Query 749 GA-AAAGGCTAAGCAAATGTGGTCTGATATGCTTA-ACTGGAGGAAAGAATATGGCGCAG 806
|| ||| | || || |||||| |||| ||||||| | ||||||||||||| ||| || |
Sbjct 291 GAGAAA-ACCAAACAGATGTGGACTGAAATGCTTAGA-TGGAGGAAAGAATTTGGTGCTG 348
Query 807 ACAC-GATCATGGAGGACTTTGATTTCAAAGAAATCGAAGAAGTGGTT-AAGTATTATCC 864
|||| | |||||||||| ||||||||||| ||||| || ||||| ||| || || || ||
Sbjct 349 ACACTG-TCATGGAGGAGTTTGATTTCAAGGAAATTGATGAAGT-GTTGAAATACTACCC 406
Query 865 ACAAGGATATCATGGTGTTGACAAGGAAGGAAGACCTATCTATATTGAGAGGCTAGGCCA 924
|||||| | ||||| ||||||||||||||| ||||| | || ||||||||||| ||
Sbjct 407 TCAAGGACACCATGGAGTTGACAAGGAAGGACGACCTGTGTACATTGAGAGGCTTGGTTT 466
Query 925 AGTTGA-TGCCACAAAGCTGATGAAAGTGACCACAATTGATAGGTACGTGAAGTACCATG 983
||| || | | || ||| ||||| |||| || || || |||||||| || || |||||||
Sbjct 467 AGTAGACT-CTACCAAGTTGATGCAAGTCACAACCATGGATAGGTATGTTAACTACCATG 525
Query 984 TGAAAGAGTTCGAGAAGACTTTCAACGTCAAATTCCCTGCTTGTTCCATCGCTGCGAAAC 1043
| | ||||| |||| ||| ||||| || || ||||| || || || ||||| || |||
Sbjct 526 TTATGGAGTTTGAGAGGACCTTCAATGTTAAGTTCCCAGCGTGCTCTATCGCCGC-AAA- 583
Query 1044 G-A-CACATTGATCAGAGCACAACGA-TCTTGGATGTTCAAGGCGTGGGGCTTAGTAACT 1100
| | || |||||||| |||||||| | |||| ||||| ||||| ||||| || | ||||
Sbjct 584 GAAGCATATTGATCAAAGCACAACTATTCTT-GATGTCCAAGGAGTGGGACTCAAAAACT 642
Query 1101 TCAACAAAGCTGCAAAAGATCTT-CTTCA-GAGTATTCAGAAA-ATCGACAACGATAACT 1157
||||||| ||||||| ||| ||| || | || |||| ||| |||| || ||||
Sbjct 643 TCAACAAGGCTGCAAGAGA-CTTGATT-ACTCGTCTTCA-AAAGGTCGATGGTGACAACT 699
Query 1158 ACCCTGAGACGC-TGAACCGTATGTTCATCATCAATGCTGGTTGTGGGTTTAGGCTTTTA 1216
| |||||||| | ||||| | ||||| |||||||||||||| | || || || | ||
Sbjct 700 ATCCTGAGAC-CTTGAACAGGATGTTTATCATCAATGCTGGCTCAGGATTCAGAATGTTG 758
Query 1217 TGGAACACAGTGAAATCTTTCCTTGACCCAAAGACTACAGCAAAGATTCACGTTCTTGGC 1276
|||||||| || || || ||||||||||||||||||||||||||||| || |||||||||
Sbjct 759 TGGAACACGGTTAAGTCCTTCCTTGACCCAAAGACTACAGCAAAGATCCATGTTCTTGGC 818
Query 1277 AACAAATACCAAACCAAACTT-CTAGAAATCATTGACGCCAATGAACTGCCTGAGTT-CT 1334
||||| ||||||| ||| || || || |||||||| | | |||||| ||||| || ||
Sbjct 819 AACAAGTACCAAAGCAAG-TTGCTTGAGATCATTGATGATAGTGAACTTCCTGAATTTCT 877
Query 1335 TGGGTGGTA-AGTGCACCTGCGCAGACAAAGGTGGATGTATGCGTTCAGACAAAGGTCCA 1393
||| ||| | || || || || ||||| ||||| || ||||| || |||||||| |||
Sbjct 878 TGGA-GGTTCA-TGTACATGTGCTGACAATGGTGGCTGCATGCGCTCTGACAAAGGCCCA 935
Query 1394 TGGAACGACCCTGAGATCTTCAAGTTG-GTTCAGAACGGTGA 1434
||||| | || |||||| | ||| | ||||| || |||||
Sbjct 936 TGGAAAAATCCAGAGATCATGAAGA-GAGTTCACAATGGTGA 976
> Ahg938886 jgi|Araly1|938886|scaffold_503077.1
Length=232
Score = 213 bits (115), Expect = 5e-54
Identities = 191/225 (85%), Gaps = 16/225 (7%)
Strand=Plus/Plus
Query 97 GACTGATCACTGATGTGCTTTCCTTCTCTCGTGACAACAATCTTCAATCAATCGAGTTCA 156
|||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||
Sbjct 9 GACTGATCACTGATGTGCTTTCGATCTCTCGTGAAAAC-ATCTTCAATCAATCGAGTTCA 67
Query 157 CTTTTTAGTTCGTGACTCCCTAATTTCACACGATCAAAGATCTCGCCACCGAAACGCTTT 216
||||||||||||| |||||||||||||||||||| ||||||||| |||| |||||||||
Sbjct 68 GTTTTTAGTTCGTGTCTCCCTAATTTCACACGATCTAAGATCTCGTCACCAAAACGCTTT 127
Query 217 CACCCAA-G-GATTCTTTCAACGGCGGCGAAGGATATGATTACACGACGGAGAAGGACGA 274
|||| || | ||| |||| ||| ||| ||||| ||| ||| | ||| ||||
Sbjct 128 CACCGAAGGAGATGGTTTC-ACGACGGAGAAGG--ATG------CGA--G-GAA-GACGG 174
Query 275 TGGCCAAGAGAGGGATAGTGAAATTGACGACCAGTTGGCAGATTC 319
|||| |||||||||||||||||||||||||||| || |||| |||
Sbjct 175 TGGCGAAGAGAGGGATAGTGAAATTGACGACCAATTAGCAGGTTC 219
> Ahg888531 jgi|Araly1|888531|Al_scaffold_0007_517
Length=294
Score = 115 bits (62), Expect = 1e-24
Identities = 102/119 (86%), Gaps = 11/119 (9%)
Strand=Plus/Plus
Query 203 CACCGAAACGCTTTCACCCAAGGATTCTTTCAACGGCGGCGAAGGATATGATTACACGAC 262
|||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||
Sbjct 174 CACCGAAACGCTTTCACCGGAGGATTCTTTCGACGGCGACGAAGGAGATGATTACACGAC 233
Query 263 -G-GA--GA----A-G--GACGATGGCCAAGAGAGGGATAGTGAAATTGACGACCAGTT 310
| || || | | ||||||||| |||||||||||||||||||||||||||||||
Sbjct 234 GGAGACGGATGCGAGGAAGACGATGGCGAAGAGAGGGATAGTGAAATTGACGACCAGTT 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87417112275
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5