BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39190.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490689 jgi|Araly1|490689|fgenesh2_kg.7__122__AT4G39190.1 1345 0.0
> Ahg490689 jgi|Araly1|490689|fgenesh2_kg.7__122__AT4G39190.1
Length=1178
Score = 1345 bits (728), Expect = 0.0
Identities = 944/1041 (91%), Gaps = 43/1041 (4%)
Strand=Plus/Plus
Query 207 CAATGGATTCGTTTAGTACTCAGAAACCTAAATCAAGAAAGATGAAGAAGAGGCTTGCGA 266
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 170 CAATGGATTCGTTTAGTACTCAGAAAACAAAATCAAGAAAGATGAAGAAGAGGCTTGCGA 229
Query 267 AAAAGTCTCGAGTTGAGATAATCTTGGATCTGTTTTTCCGGGCGATCGAGATAGTTGTGG 326
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 AAAAGTCCCGAATTGAGATAATCTTGGATCTGTTTTTCCGGGCGATCGAGATAGTTGTGG 289
Query 327 TTTTGGTTACATTAGCTAAGCTCTCTTATGAGCTCGTTGTCACGTTTGAGGATTCTAGTG 386
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TTTTGGTTACAGTAGCTAAGCTCTCTTATGAGCTCGTTGTCACGTTTGAGGATTCTAGTG 349
Query 387 TCGCATCGGTTATTCTCGCAAACCGTAGTCTTGCGTTTGTCATAGGAAACGCGATAGTCA 446
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 350 TCGCATCGGTTATTCTCGCAAACCGTAGCCTTGCGTTTGTTGTAGGAAACGCGATAGTCA 409
Query 447 TCGCTCTGATCGCTAAATCCGGTATTCTCTTGAATCAAGAACATGATCCCAAGTGCAAAA 506
||||||||||||||||||| ||| |||||||||||||||||| ||||||||||| |||||
Sbjct 410 TCGCTCTGATCGCTAAATCGGGTCTTCTCTTGAATCAAGAACTTGATCCCAAGTTCAAAA 469
Query 507 GCAACGATCTTTACGAGGATTTTGTTCTGGAGAGCTCAAGGAGAGGTGGATTTTCACAAG 566
| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct 470 GAAACGATCTTTACGAGGAGTTTGTTCTGGAGAGCTCAAGGAGAGATGGAGTTTCACAAG 529
Query 567 ATGAGATGAGAAGCGGAGAAAAACAGAGTGAAGCAGAGAACGAGGCTAAACAGAGCATAA 626
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CTGAGATGAGAAGCAGAGAAAAACAGAGTGAAGCAGAGAACGAGGCTAAACAGAGCATAA 589
Query 627 CCGAGAACAAAGCAAAAGAGAACGAAGAGAAACAGAGCATCACCGAGAGCAGAGTaaaaa 686
|||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 590 CCGAGAACAAAGCAAAAGAGAACGAAGAGAAACAAAGCATAACTGAGAGCAGAGTAAAAC 649
Query 687 aaaGCGTAACAGAGAAGAAGACGAAACGGATCATTTCTGAGAAGAAAGTGAAACAGAGCA 746
||||||||||||||||||||||||||| || || ||||||||||||| | |
Sbjct 650 AAAGCGTAACAGAGAAGAAGACGAAACAGAGCAAACCTGAGAAGAAAGT--------G-A 700
Query 747 AACCTGAGAAGTTGACAAAACAGAGCACTTCTGTGAACAGAGAGAAACAGAGCGAAGTTG 806
|| | || | | |||| | ||| | | || || | |||||||||| |||||
Sbjct 701 AA-C--AG-A---G-CAAACCTGAG-A--GGT-TG-AC----A-AAACAGAGCGTAGTTG 742
Query 807 AGCATAAGGACATAACTAT-GACGATAGAGAAACAGAACTTGACAGAGAAGAGGCAAATT 865
||||||||||| ||||| | || ||| ||||||||||| |||||||||||||||||||||
Sbjct 743 AGCATAAGGACGTAACTGTGGA-GATGGAGAAACAGAATTTGACAGAGAAGAGGCAAATT 801
Query 866 CAGAGTTACCAACGAAG-CAAGTCGGAGAATCTGAAGGTTTTGGAGAAGAGTTCTTGTGG 924
||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 802 CAGAGTTACCAACGAAGTC-AGTCGGAGAATCTGAAGGTTTTGGAGAAGAGTTATTGTGG 860
Query 925 AAGATTGAAGAGATCAGAGACAGATGCATCTGCTGAGAGATTTGATTCCGATGATGAACT 984
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 861 AAGATTGAAGAGATCAGAGACAGATGCATCTTCTGAAAGATTTGATTCCGATGATGAACT 920
Query 985 TCGATACAAGATCGAGTCTTTCATTGCAAGACAGAGAAGAAATCAAACTGATGAATAGGT 1044
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 921 CCGATACAAGATCGAGTCTTTCATTGCAAGGCAGAGAAGGAATCAAACTGATGAATAGGT 980
Query 1045 TTGTATAATTTAGATGAAATACAAAGAATAAGCaaaaaaaaatgaaaaaGACAGTAGTTT 1104
||| ||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 981 TTGAATAATTTAGATAAAATACAAAAAATAAGCAAAAAAAAATTAAAAAGACAGTAGTTT 1040
Query 1105 ATGCAAATAGCATTCACGTATATATTAAAGTGTTTGTTATAC-----TAAAAGGCTTCTT 1159
||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||
Sbjct 1041 ATGCAAATAGCATTCACGTATATATTAAAGTGTTTGTTATAAAAGGGTAAAA--CTTGTT 1098
Query 1160 TTAAAGCCTCTGGAAATCTGGCATAAATATTTGCTTAGatattttttttg-tttt---at 1215
|||||||| || ||||| ||||||||||||||| |||| | |||||||| |||| ||
Sbjct 1099 TTAAAGCC-CTCGAAATTTGGCATAAATATTTGTTTAGCTTTTTTTTTTTATTTTTTTAT 1157
Query 1216 ttctttgtataatttttgata 1236
|||||||||||||||||||||
Sbjct 1158 TTCTTTGTATAATTTTTGATA 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5