BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39200.1
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490690 jgi|Araly1|490690|fgenesh2_kg.7__123__AT4G39200.2 717 0.0
Ahg320007 jgi|Araly1|320007|fgenesh1_pm.C_scaffold_4000064 300 1e-80
> Ahg490690 jgi|Araly1|490690|fgenesh2_kg.7__123__AT4G39200.2
Length=576
Score = 717 bits (388), Expect = 0.0
Identities = 553/623 (89%), Gaps = 49/623 (8%)
Strand=Plus/Plus
Query 1 ATAGATATTGACCTCAAACTTAGGGAAACCCTAATATAAGAGCAAACCCTAGCAGCGCTA 60
||||||||| |||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 1 ATAGATATTAACCTCAGACTTAGGGAAACCCTAATATAAGAGCAAACCCT---A--G--- 52
Query 61 TCTCCCTCAGCCTCATCTTTCACCCACTACTATTCGCCGTTCGCTTTTCCCTCGCCGTCG 120
|||||| || | ||||| ||||| | |||||||||||| | || || ||||||
Sbjct 53 ---CCCTCA---TC-T-TTTCATCCACT--T-CTCGCCGTTCGCTCTACCGTCACCGTCG 101
Query 121 AAATCAACATGGCGCCGAAGAAGGATAAGGTTCCGCCACCGTCATCGAAGCCGGCGAAAT 180
|| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 102 AAGTCAACATGGCGCCGAAGAAGGATAAGGTTCCGCCACCATCATCAAAGCCGGCGAAAT 161
Query 181 CCGGAGGTGGAAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGA 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 162 CCGGAGGTGGAAAGC---AGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGA 218
Query 241 ACAACATGGTGCTGTTTGATCAAGCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAGT 300
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 219 ACAACATGGTGTTGTTTGATCAAGCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAAT 278
Query 301 TCAAGCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATCAATGGGTCGCTAGCAA 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 279 TCAAGCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATTAATGGGTCGCTAGCAA 338
Query 361 GGAGAGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCGA 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GGAGGGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCGA 398
Query 421 GCCAGCAGATCTACACTCGTGCCACCAACACCTAAGATGTTT-GGTTTCTTTATCCACCT 479
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 399 GCCAGCAGATCTACACTCGTGCCACCAACACCTAAGATGTTTTGGTT-CTTTATCC---- 453
Query 480 AAGATGTTTGGCTTCTTTTTCTTATCTCTTGTTGTTTGATTCTTCAGGAACTTGTTAGAA 539
| | |||| | |||||| |||||||||||| ||||||| |||||||
Sbjct 454 --G--------C--CTTTA-C----CTCTTGCTGTTTGATTCTTGAGGAACTCGTTAGAA 496
Query 540 TCTTTTGTTTCGTATTCCGtttttttGAGATATATGGTTATTTAAAACGCATCAAGACTT 599
||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 497 TCTTT-GTTTCGTATTCCGTTTTTT-GAGATATATGGCTATTTAAAACGCATCAAGACTT 554
Query 600 CTAAAATTGAGTC-AATCCTTTG 621
|||||||| |||| || ||||||
Sbjct 555 CTAAAATTCAGTCCAA-CCTTTG 576
> Ahg320007 jgi|Araly1|320007|fgenesh1_pm.C_scaffold_4000064
Length=210
Score = 300 bits (162), Expect = 1e-80
Identities = 195/211 (92%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 246 ATGGTGCTGTTTGATCAA-GCTACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAA 304
||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTTTTGTTTGATCAAGGC-ACTTATGACAAGCTTCTCACTGAAGCTCCCAAGTTCAA 59
Query 305 GCTCATCACCCCTTCCATTCTCTCTGACCGTATGAGGATCAATGGGTCGCTAGCAAGGAG 364
||||||||| || || |||||||| ||||||||||||||||||||||| || || |||||
Sbjct 60 GCTCATCACTCCGTCGATTCTCTCCGACCGTATGAGGATCAATGGGTCTCTTGCGAGGAG 119
Query 365 AGCGATTAGGGAGCTAATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCGAGCCA 424
||| || ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 120 AGCCATAAGGGAGCTAATGGCCAAGGGTTTGATCAGGATGGTCTCTGCTCACTCGAGCCA 179
Query 425 GCAGATCTACACTCGTGCCACCAACACCTAA 455
|||||||||||||||||||||||||||||||
Sbjct 180 GCAGATCTACACTCGTGCCACCAACACCTAA 210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24627404382
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5