BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39210.1
Length=1959
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490693 jgi|Araly1|490693|fgenesh2_kg.7__126__AT4G39210.1 2861 0.0
Ahg899427 jgi|Araly1|899427|Al_scaffold_0004_77 1487 0.0
> Ahg490693 jgi|Araly1|490693|fgenesh2_kg.7__126__AT4G39210.1
Length=1896
Score = 2861 bits (1549), Expect = 0.0
Identities = 1733/1819 (95%), Gaps = 24/1819 (1%)
Strand=Plus/Plus
Query 81 TTCTTGTCTTGGTCTTCCCTCGATTTCAAACGACATTAACCAAAACCAGAGAACTACGAA 140
||||| ||||||| |||| | |||||||||||||| ||||||||||||||||||| |
Sbjct 46 TTCTTCTCTTGGTTTTCCTTGGATTTCAAACGACAATAACCAAAACCAGAGAACT--GTC 103
Query 141 TTATT-C-GCTaaaaaaaGATGGATTCTTGTTGCAACTTTAGCTTGGGGACAAAAACTGT 198
| ||| | ||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 104 TCATTCCAGCTAAAAAAAGATGGATTCTTTTTGCAACTTTAGCTTGGGGACAAACACTGT 163
Query 199 CTTGGCCAAAGACAGTTTCAAGAATGTAGAGAACAAATTTTTGGGTGAGAAGATCAAAGG 258
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 CTTGTCCAAAGACAGTTTCAAGAATGTAGAGAACAAATTTTTGGGTGAGAAGATCAAAGG 223
Query 259 AAGCGTCTTGAAGCCTTTTTCTTCAGATTTGAGTTCCAAGAAGTTCAGAAATCGAAAATT 318
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 224 AAGCGTCTTGAAACCTTTTTCTTCAGATTTAAGTTCCAAGAAGTTCAGAAATCGAAAATT 283
Query 319 GAGGCCCGGTGTTGCTTACGCTATTGCTACCTCAAAGAATGCTAAAGAGGCTTTGAAAAA 378
|||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 284 GAGGTCCGGTGTTGCTTACGCCATTGCTACTTCAAAGAATGCTAAAGAGGCTTTGAAAAA 343
Query 379 TCAACCTTCCATGTTTGAGAGAAGAAGAGCAGATCCTAAAAATGTGGCTGCAATCATTCT 438
|||||||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||
Sbjct 344 TCAACCTTTAATGTTCGAGAGAAAAAGAGCAGATCCGAAGAATGTGGCTGCAATCATTCT 403
Query 439 AGGAGGAGGCGATGGAGCTAAACTCTTTCCTCTTACCAAGCGAGCAGCAACACCTGCTGT 498
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 404 AGGAGGAGGCGATGGAGCTAAACTCTTTCCTCTTACAAAGCGAGCAGCAACACCGGCTGT 463
Query 499 TCCTGTGGGTGGATGCTATAGGATGATCGATATCCCGATGAGTAATTGCATTAACAGTTG 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 464 TCCTGTGGGTGGATGCTATAGGATGATCGATATCCCGATGAGTAATTGCATTAACAGTTG 523
Query 559 CATAAACAAGATTTTCGTGCTGACTCAGTTTAACTCGGCTTCCCTCAATCGCCATTTGGC 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 524 CATAAACAAGATTTTCGTGCTGACTCAGTTTAACTCGGCTTCCCTCAATCGCCATTTGGC 583
Query 619 TCGTACTTATTTTGGGAATGGCATAAACTTTGGAGATGGTTTTGTTGAGGTTCTGGCTGC 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 TCGTACTTATTTTGGGAATGGCATAAACTTTGGAGATGGTTTTGTTGAGGTTCTGGCTGC 643
Query 679 TACACAAACTCCTGGTGAAGCCGGGAAAAAGTGGTTTCAAGGCACAGCTGATGCTGTGAG 738
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 644 TACACAAACTCCTGGTGAAGCCGGGAAAAAGTGGTTTCAAGGAACAGCAGATGCTGTGAG 703
Query 739 AAAATTTCTGTGGGTGTTTGAGGATGCTAAGAACAGGAACATTGAGAATATAATCATCTT 798
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 704 AAAATTTCTCTGGGTGTTTGAGGATGCTAAGAACAGGAACATTGAGAATATACTCATCTT 763
Query 799 GTCTGGAGATCACCTATATAGAATGAACTATATGGACTTTGTTCAGCACCATGTCGATAG 858
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 764 GTCTGGAGATCACCTATATAGAATGAACTATATGGACTTTGTTCAGTACCATGTCGATAG 823
Query 859 TAAAGCCGATATTACTCTTTCGTGCGCGCCGGTTGATGAGAGCCGTGCGTCGGAGTATGG 918
|||||| ||||||||||||||||||||||| ||||||||||||||||| || || |||||
Sbjct 824 TAAAGCGGATATTACTCTTTCGTGCGCGCCAGTTGATGAGAGCCGTGCATCAGATTATGG 883
Query 919 ACTGGTCAATATTGATCGAAGCGGGCGTGTAGTCCATTTCTCTGAGAAACCAACTGGCAT 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 ACTGGTCAATATTGATCGAAGCGGGCGTGTAGTCCATTTCTCTGAGAAACCAACTGGCAT 943
Query 979 CGATCTGAAATCAATGCAAACCGATACTACTATGCATGGACTGTCTCATCAAGAAGCAGC 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 CGATCTGAAATCAATGCAAACCGATACTACTATGCATGGACTGTCTCATCAAGAAGCAGC 1003
Query 1039 AAAATCTCCATACATTGCGTCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTACTGAA 1098
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1004 AAAATCTCCATACATTGCGTCAATGGGAGTTTATTGCTTCAAAACCGAAGCTTTACTGAA 1063
Query 1099 GCTTCTGACATGGCGGTATCCGAGTTCCAATGACTTTGGGTCTGAAATTATTCCTGCAGC 1158
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1064 GCTTCTGACATGGCGGTATCCGAGTTCCAATGACTTTGGATCTGAAATTATTCCTGCAGC 1123
Query 1159 TATAAAAGATCACAATGTTCAAGGATACATCTACAGAGACTATTGGGAAGACATCGGAAC 1218
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1124 TATAAGAGATCACAATGTTCAAGGATACATCTACAGAGACTATTGGGAAGATATCGGAAC 1183
Query 1219 TATTAAGAGTTTCTATGAAGCTAATATTGCTCTTGTCGAGGAGCATCCCAAGTTTGAGTT 1278
||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1184 TATAAAGAGTTTCTATGAAGCTAATCTTGCCCTTGTCGAGGAGCATCCCAAGTTTGAGTT 1243
Query 1279 TTACGATCAGAATACACCTTTCTACACTTCTCCTCGGTTTCTACCACCCACCAAAACCGA 1338
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1244 TTACGATCAGAATACGCCTTTCTACACTTCTCCTCGGTTTTTACCACCCACCAAAACCGA 1303
Query 1339 GAAGTGCCGGATTGTAAATTCGGTAATCTCACACGGATGTTTCTTGGGAGAATGCAGCAT 1398
||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 1304 GAAATGCCGGATTGTAAATTCGATAATCTCACACGGATGTTTCTTGGGGGAATGCAGCGT 1363
Query 1399 CCAACGTTCCATTATTGGTGAAAGATCACGTCTTGACTATGGTGTTGAGCTTCAGGATAC 1458
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1364 CCAACGTTCCATCATTGGTGAAAGGTCACGTCTTGACTATGGTGTTGAGCTTCAGGATAC 1423
Query 1459 TCTTATGTTAGGAGCGGATAGTTACCAAACCGAATCTGAGATCGCGTCTCTGCTTGCGGA 1518
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1424 TCTTATGTTAGGAGCGGATAGTTACCAAACCGAATCTGAGATCGCGTCTCTGCTCGCGGA 1483
Query 1519 AGGAAATGTTCCAATTGGCATTGGCCGAGATACAAAGATCAGGAAATGCATCATTGACAA 1578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 AGGAAATGTTCCAATTGGCATTGGCCGAGATACAAAGATCAGGAAATGCATCATTGACAA 1543
Query 1579 GAATGCAAAGATCGGGAAAAACGTGGTGATCATGAACAAAGATGATGTTAAGGAGGCTGA 1638
||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||
Sbjct 1544 GAATGCAAAGATCGGGAAAAACGTGATGATCTTGAACAAAGATGATGTTAAGGAAGCTGA 1603
Query 1639 TAGGCCAGAGGAAGGATTCTACATTCGATCTGGAATCACTGTGGTTGTCGAAAAGGCCAC 1698
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TAGACCAGAGGAAGGATTCTACATTCGATCTGGAATCACTGTGGTTGTCGAAAAGGCCAC 1663
Query 1699 CATTAAAGACGGTACTGTGATATGAACAAAACGATCTCAAGACCGCCGTGGTGATTTTGA 1758
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 1664 CATTAAAGACGGTACTGTGATATGAACAAAACGATCTCAAGACCGCCGTG-TAAGTTTGA 1722
Query 1759 GGTGTTT-GGCCGGAAGTTAAAAAGA-GAGACCGTTGTGATTTTGTCATGTAAATTAGAA 1816
||||||| |||| ||||| ||||| | ||||| |||||||||||||||||||||||||||
Sbjct 1723 GGTGTTTTGGCCTGAAGTGAAAAAAAAGAGACAGTTGTGATTTTGTCATGTAAATTAGAA 1782
Query 1817 GAG---GA-GA--TAGAAGAATCATACAATTTAGAAGCAAAAGCAAGTTTAAGCTTTACA 1870
||| || || |||||||||||||||| ||||| | |||||||||||||
Sbjct 1783 GAGTTTGAAGAGATAGAAGAATCATACAACTTAGA-G----------TTTAAGCTTTACA 1831
Query 1871 ATAAGAGTGATCAGCCGAT 1889
||||||||||| |||||||
Sbjct 1832 ATAAGAGTGATAAGCCGAT 1850
> Ahg899427 jgi|Araly1|899427|Al_scaffold_0004_77
Length=1563
Score = 1487 bits (805), Expect = 0.0
Identities = 1335/1588 (84%), Gaps = 47/1588 (3%)
Strand=Plus/Plus
Query 158 ATGGATTCTTGTTGCAACTTTAG-CTTGGGGACAA-AAACTGTCTT-GGCC-AAAGACAG 213
|||||||||| || | ||||| | ||||||||||| | | | || ||| ||| | |
Sbjct 1 ATGGATTCTTCTTACTACTTT-GCCTTGGGGACAAGTAGTTCTATTCTGCCAAAACTCTG 59
Query 214 TTTCAAGAATGTAGAGAACAAATTTTTGGGTGAGAAGATCAA-AGGAA--GCGTCTTGAA 270
|||||||||||||||||||| ||||| ||||||||||||||| | || | |||| ||
Sbjct 60 TTTCAAGAATGTAGAGAACAGATTTTGGGGTGAGAAGATCAACAACAATGGTTTCTTTAA 119
Query 271 GCCTTT-TTCTTCAGATTTGAGTTCCAAGAAGTTCAGAAATCGAAAATTGAGGCCCGGTG 329
|||| | ||||||||| | |||||||| || |||| | || | || | |||
Sbjct 120 -ACTTTCTAAATCAGATTTGGGCTCCAAGAA--TC-GAAA--G----TTCAAGCGCAGTG 169
Query 330 TTGCTTACGCTATTGCTACCTCAAAGAATGCTAAAGAGGCTTTGAAAAATCAA-CCTTCC 388
||| ||||||| |||| || || || || | ||| ||||| || | | | || ||||||
Sbjct 170 TTGTTTACGCTGTTGCCACTTCGAATAACCCAAAAAAGGCTATG-ACAGTAAAGCCTTCC 228
Query 389 ATGTTTGAGAGAAG-AAGAGCAGATCCTAAAAATGTGGCTGCAATCATTCTAGGAGGAGG 447
|||||||||||||| ||| ||||| || |||| ||||||||||||||||||||||||||
Sbjct 229 ATGTTTGAGAGAAGAAAG-GCAGACCCGCAAAACGTGGCTGCAATCATTCTAGGAGGAGG 287
Query 448 CGATGGAGCTAAACTCTTTCCTCTTACCAA-GCGAGCAGCAACACCTGCTGTTCCTGTGG 506
|||||||||||||||| ||||||| ||| | |||| |||||||| ||||||||||| |
Sbjct 288 TAATGGAGCTAAACTCTTCCCTCTTA-CAATGAGAGCCGCAACACCAGCTGTTCCTGTTG 346
Query 507 GTGGATGCTATAGGATGATCGATATCCCGATGAGTAATTGCATTAACAGTTGCATAAACA 566
|||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||||| ||||
Sbjct 347 GTGGATGCTACAGGCTGATCGATATTCCGATGAGTAACTGCATTAACAGCTGCATCAACA 406
Query 567 AGAT-TTTCGTGCTGACTCAGTTTAACTCGGCTTCCCTCAATCGCCATTTGGCTCGTACT 625
|||| ||| |||||||| || || ||||| ||||||||||| || ||||| || || |||
Sbjct 407 AGATCTTT-GTGCTGACACAATTCAACTCTGCTTCCCTCAACCGACATTTAGCACGCACT 465
Query 626 TATTTTGGGAATGGCATAAACTTTGGAGATGGTTTTGTTGAGGTTCTGGCTGCTACACAA 685
||||||||||||||||||||||| |||| |||||| || |||||||| ||||| ||||||
Sbjct 466 TATTTTGGGAATGGCATAAACTTCGGAGGTGGTTTCGTAGAGGTTCTTGCTGCAACACAA 525
Query 686 ACTCCTGGTGAAGCCGGGAAAAAGTGGTTTCAAGGCACAGCTGATGCTGTGAGAAAATTT 745
|| || || ||||| ||||||| |||||||||||| ||||| |||||||| ||||||||
Sbjct 526 ACACCAGGGGAAGCTGGGAAAATGTGGTTTCAAGGAACAGCAGATGCTGTCAGAAAATTC 585
Query 746 CTGTGGGTGTTTGAGGATGCTAAGAACAGGAACATTGAGAATATAATCATCTTGTCTGGA 805
|| ||||||||||||||||| |||||||||||||||||||| ||| | || |||||||||
Sbjct 586 CTCTGGGTGTTTGAGGATGCCAAGAACAGGAACATTGAGAACATACTTATTTTGTCTGGA 645
Query 806 GATCACCTATATAGAATGAACTATATGGACTTTGTTCAGCAC-CATGTCGATAGTAAAGC 864
||||| || |||||||||||||| ||||||||||||||| | |||||||||||||| ||
Sbjct 646 GATCATCTCTATAGAATGAACTACATGGACTTTGTTCAG-TCTCATGTCGATAGTAATGC 704
Query 865 CGATATTACTCTTTCGTGCGCGCCGGTTGA-TGAGAGCCGTGCGTCGGAGTATGGACTGG 923
||||||||||||||||| || || | | | ||| |||||||| || | | ||| || |
Sbjct 705 AGATATTACTCTTTCGTGTGCACCAG-TCAGTGAAAGCCGTGCATCAAATTTTGGTCTAG 763
Query 924 TCAATATTGATCGAAGCGGGCGTGTAGTCCATTTCTCTGAGAAACCAACTGGCA-TCGAT 982
| || |||||| || | ||||||||| |||||||||| ||||||||||| || | |||||
Sbjct 764 TGAAGATTGATAGAGGTGGGCGTGTAATCCATTTCTCCGAGAAACCAAC-GGGAGTCGAT 822
Query 983 CTGAAATCAATGCAAACCGATACTACTATGCATGGACTGTCTCATCAAGAAGCAGCAAAA 1042
||||||||||||||||| || || || |||| |||||||||||||||||||||| || |
Sbjct 823 CTGAAATCAATGCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGAAGCAACAGAT 882
Query 1043 TCTCCATACATTGCGTCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTACTGAAGCTT 1102
|||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 883 TCTCCATACATTGCATCAATGGGAGTTTATTGTTTCAAAACTGAAGCTTTGCTGAACCTT 942
Query 1103 CTGACATGGCGGTATCCGAGTTCCAATGACTTTGGGTCTGAAATTATTCCTGCAGCTATA 1162
|| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 943 CTAACAAGGCGGTATCCGAGTTCCAATGACTTTGGATCTGAAATTATTCCTGCAGCCATA 1002
Query 1163 AAAGATCACAATGTTCAAGGATACATCTACAGAGACTATTGGGAAGACATCGGAACTATT 1222
| |||||| |||||||||||||||| | | |||| || ||||| || || ||||||||
Sbjct 1003 AGAGATCATGATGTTCAAGGATACATATTCCGAGATTACTGGGAGGATATTGGAACTATA 1062
Query 1223 AAGAGTTTCTATGAAGCTAATATT-GCTCTTGTCGAGGAGCATCCCAAGTTTGAGTTTTA 1281
|||| |||||||| |||||| || |||||||| ||||||| || |||||||| || ||
Sbjct 1063 AAGACATTCTATGAGGCTAAT-TTAGCTCTTGTTGAGGAGCGGCCAAAGTTTGAATTCTA 1121
Query 1282 CGAT-CAGAATACACCTTTCTACACTTCTCCTCGGTTTCTACCACCCACCAAAACCGAGA 1340
||| ||| | || || |||||||||||||||||||| || ||||| |||||| | ||||
Sbjct 1122 TGATCCAG-ACACTCCGTTCTACACTTCTCCTCGGTTCCTCCCACCAACCAAAGCTGAGA 1180
Query 1341 AGTGCCGGATTGTAAATTCGGTAATCTCACACGGATGTTTCTTGGGAGAATGCAGCATCC 1400
| || || || ||| ||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct 1181 AATGTCGCATGGTAGATTCGATAATCTCACACGGATGTTTCCTGCGAGAATGCAGCGTCC 1240
Query 1401 AACGTTCCATTATTGGTGAAAGATCACGTCTTGACTATGGTGTTGAGCTTCAGGATACTC 1460
|||||||||| ||||||||| | |||||||| |||||||| |||||||||||||||||
Sbjct 1241 AACGTTCCATCATTGGTGAACGGTCACGTCTAGACTATGGAGTTGAGCTTCAGGATAC-A 1299
Query 1461 TT-ATGTTAGGAGCGGA-TAGTTACCAAACCGAATCTGAGATCGCGTCTCTGCTT-GCGG 1517
|| |||||||| || || || |||||||| |||||||| || || ||||| || || |
Sbjct 1300 TTGATGTTAGGTGCAGATTA-CTACCAAACTGAATCTGAAATTGCATCTCT-ATTAGCAG 1357
Query 1518 AAGGAAATGTTCCAATTGGCATTGGCCGAGATACAAAGATCAGGAAATGCATCATTGACA 1577
||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 1358 AAGGAAAGGTTCCAATTGGCATTGGTAGAGACACAAAGATCAGGAAATGCATCATTGACA 1417
Query 1578 AGAATGCAAAGATCGGGAAAAACGTGGTGATCATGAACAAAGATGATGTT-AAGGAGGCT 1636
||||||| |||||||| ||||||||| | ||||||||||||| ||||| ||| || |
Sbjct 1418 AGAATGCTAAGATCGGTAAAAACGTGATCATCATGAACAAAGGCGATGTACAAGAAG-CG 1476
Query 1637 GATAGGCCAGAGGAAGGATTCTACATTCGATCTGG-AATCACTGTGGTTGTCGAAAAGGC 1695
||||||||||||||||||||||| ||||||| ||| |||||||||| | |||||||||||
Sbjct 1477 GATAGGCCAGAGGAAGGATTCTATATTCGAT-TGGGAATCACTGTGATAGTCGAAAAGGC 1535
Query 1696 CACCATTAAAGACGGTACTGTGATATGA 1723
|| ||| ||||||||||||| ||||||
Sbjct 1536 GACAATTCAAGACGGTACTGTAATATGA 1563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73628443585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5