BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39220.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490694 jgi|Araly1|490694|fgenesh2_kg.7__127__AT4G39220.1 1190 0.0
Ahg481027 jgi|Araly1|481027|fgenesh2_kg.4__87__AT2G21600.1 577 6e-164
> Ahg490694 jgi|Araly1|490694|fgenesh2_kg.7__127__AT4G39220.1
Length=829
Score = 1190 bits (644), Expect = 0.0
Identities = 765/818 (94%), Gaps = 29/818 (4%)
Strand=Plus/Plus
Query 1 AAAATAAAATCAAAAATAAATCGCCGATC-AATCCA---TCTTCTTCTTCATTTGGTATT 56
||||||||| |||||||||| |||||||| || ||| |||||||||||||||||| ||
Sbjct 1 AAAATAAAAACAAAAATAAAACGCCGATCGAA-CCATCTTCTTCTTCTTCATTTGGTGTT 59
Query 57 GCTG-CTTACGTCGTCAGATCTGCTCGTTTTTTCGCTCCATT-TTTGGGTCACCATTACT 114
|| | ||| ||||| |||||||||||| ||||||||||| || |||||||||||||||||
Sbjct 60 GC-GTCTTTCGTCGCCAGATCTGCTCG-TTTTTCGCTCC-TTGTTTGGGTCACCATTACT 116
Query 115 CAGC-TTCCGTTTTAAATATCACATTAGATGGACGAAAGCGGAGGTGATAGTGGTTCAGT 173
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 117 CAGCTTTCCGTTTTAAATATCACATTAGATGGACGAAAGCGGAGGTGATAGTGGTTCAGT 176
Query 174 GGCCACACCTGTTCAACAGCGAGCACATGAGGCATGGAGGATTTACCAACACTATCTTGA 233
|| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 AGCTACGCCTGTTCAACAGCGAGCACATGAGGCATGGAGGATTTACCAACACTATCTTGA 236
Query 234 CAAGACTACACCTCATGCAAATTACAGATGGATTGGAACTCTTGTCGTCGCTCTTATCTA 293
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 237 CAAGACTACACCTCATGCAAATTACAGGTGGATCGGAACTCTTGTCGTCGCTCTTATCTA 296
Query 294 CTGTTTGAGGGTTTACTATATTCAGGGTTTCTACATCATCGCCTATGGTCTTGGAATCTA 353
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 297 CTGTTTGAGGGTTTACTATATTCAAGGTTTCTACATCATCGCCTATGGTCTTGGGATCTA 356
Query 354 CCTTCTCAATCTGCTTATCGGGTTCTTGTCCCCTCTTGTTGATCCTGAAGCTGGTGGGGT 413
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 357 CCTTCTCAATCTGCTTATCGGGTTCTTATCCCCTCTTGTTGATCCTGAGGCTGGTGGGGT 416
Query 414 CTCTGATGGGCCTTCTCTGCCTACTAGAGGTTCTGATGAGTTCAAGCCTTTCATTCGCCG 473
||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 417 CTCGGATGGGCCTACTCTGCCTACTAGAGGTTCTGATGAGTTCAAGCCTTTTATTCGCCG 476
Query 474 TCTCCCCGAGTTCAAATTCTGGTACTCCATGACAAAGGCTTTCTGCATAGCTTTCCTCAT 533
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 TCTCCCCGAGTTCAAATTCTGGTACTCCATGACAAAGGCTTTCTGCATAGCCTTCCTCAT 536
Query 534 GACATTCTTCTCGGTGTTTGACGTTCCTGTGTTTTGGCCAATTCTGCTGTGCTATTGGAT 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GACATTCTTCTCGGTGTTTGACGTTCCTGTGTTTTGGCCAATTCTGCTGTGCTATTGGAT 596
Query 594 CGTTCTCTTTGTTCTCACCATGAGACGCCAGATCGCCCACATGATCAAGTACAAATACAT 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 597 CGTTCTCTTTGTTCTCACCATGAGACGCCAGATCGCCCACATGATCAAGTACAAGTACAT 656
Query 654 CCCTTTCAGCTTCGGCAAACAGAAATATGGTGGACGGAGCAGCAGCGGCTCACGTGCGGA 713
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 657 CCCTTTCAGCTTCGGCAAACAGAAATATGG---ACGGAGCAGCAGCGGCTCACGTGCGGA 713
Query 714 TTGATCTGACCAATTTGCTGACCATTAGCTACtttttttGTCTTTGCAAAAGAGAAAGAA 773
|||||||||||| || || | | || ||||| | | ||||||||| ||||| ||
Sbjct 714 TTGATCTGACCA-TTAGC---C-A----CT--TTTTTGT-T-TTTGCAAAAAAGAAA-AA 759
Query 774 -AAAATTGTTAAGAATATCATTTTGGACCATTTTTACA 810
|||| |||||||||||||||||||||| |||||||||
Sbjct 760 GAAAACTGTTAAGAATATCATTTTGGACTATTTTTACA 797
> Ahg481027 jgi|Araly1|481027|fgenesh2_kg.4__87__AT2G21600.1
Length=756
Score = 577 bits (312), Expect = 6e-164
Identities = 478/557 (86%), Gaps = 15/557 (3%)
Strand=Plus/Plus
Query 142 ATGGACGAAAGCGGAGGTGATAGTGGTTCAG-TGGCCACACCTGTTCAACAGCGA-GCAC 199
||||| | ||| || ||||| |||||||| | |||| |||||||| ||| || | | ||
Sbjct 114 ATGGATGGAAGTGGTGGTGACAGTGGTTC-GATGGCTACACCTGTACAAAAG-AAGGTAC 171
Query 200 ATGAGGCATGGAGGATTTACCAACACTATCTTGACAAGACTACACCTCATGCAAATTACA 259
|||||||||||||| |||||||| | ||||| |||||||||||||||||| ||| | |||
Sbjct 172 ATGAGGCATGGAGGGTTTACCAATATTATCTGGACAAGACTACACCTCATTCAACTAACA 231
Query 260 GATGGATTGGAACTCTTGTCGTCGCTCTTATCTACTGTTTGAGGGTTTACTATATTCAGG 319
| ||||| ||||| || |||||| |||||||||||||||||||||||||| ||||||||
Sbjct 232 GGTGGATCGGAACACTCGTCGTCTTTCTTATCTACTGTTTGAGGGTTTACTCTATTCAGG 291
Query 320 GTTTCTACATCATCGCCTATGGTCTTGGAATCTACCTTCTCAATCTGCTTATCGGGTTCT 379
| |||||||||||| |||||||||||||||||||||| || |||||||||||||||||||
Sbjct 292 GATTCTACATCATCTCCTATGGTCTTGGAATCTACCTCCTGAATCTGCTTATCGGGTTCT 351
Query 380 TGTCCCCTCTTGTTGATCCTGAAGCTGGTGGGGTCTCTGATGG-GCCTTCTCTGCCTACT 438
|||||||||||||||||||||| ||| | | || ||||||| || | |||| ||||||
Sbjct 352 TGTCCCCTCTTGTTGATCCTGA-GCTCGAAG--TCACTGATGGAGC-TACTCTCCCTACT 407
Query 439 AGAGGTTCTGATGAGTTCAAGCC-TTTCATTCGCCGTCTCCCCGAGTTCAAATTCTGGTA 497
|||||||||||||||||||||| ||| || || || || || ||||| |||||||||||
Sbjct 408 CGAGGTTCTGATGAGTTCAAGCCATTT-ATCCGTCGACTGCCAGAGTTTAAATTCTGGTA 466
Query 498 CTCCATGACAAAGGCTTTCTGCATAGC-TTTCCTCATGACATTCTTCTCGGTGTTTGACG 556
||||||||| ||||| ||||||||||| |||| ||||||| ||||||||||| |||||||
Sbjct 467 CTCCATGACTAAGGCATTCTGCATAGCATTTC-TCATGACGTTCTTCTCGGTCTTTGACG 525
Query 557 TTCCTGTGTTTTGGCCAAT-TCTGCTGTGCTATTGGATCGTTCTCTTTGTTCTCACCATG 615
|||| || || ||||| || | | || ||||| ||| | ||||||||||| |||||||||
Sbjct 526 TTCCCGTCTTCTGGCCTATAT-TACTTTGCTACTGGGTTGTTCTCTTTGTCCTCACCATG 584
Query 616 AGACGCCAGATCGCCCACATGATCAAGTACAAATACATCCCTTTCAGCTTCGGCAAACAG 675
|||||||| |||||||||||||||||| |||| ||||| ||||||||| |||| ||||||
Sbjct 585 AGACGCCAAATCGCCCACATGATCAAGCACAAGTACATTCCTTTCAGCATCGGAAAACAG 644
Query 676 AAATATGGTGGACGGAG 692
|||||| | || |||||
Sbjct 645 AAATATAGCGGCCGGAG 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5