BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39230.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490695 jgi|Araly1|490695|fgenesh2_kg.7__128__AT4G39230.1 1513 0.0
> Ahg490695 jgi|Araly1|490695|fgenesh2_kg.7__128__AT4G39230.1
Length=1155
Score = 1513 bits (819), Expect = 0.0
Identities = 954/1017 (94%), Gaps = 18/1017 (2%)
Strand=Plus/Plus
Query 213 TCCGAGTCTAAAAATGACGAGTAAAAGCAAAATCCTGTTCATCGGAGGAACGGGTTATAT 272
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 143 TCCGAGCCTAAAAATGACGAGTAAGAGCAAAATCTTGTTCATCGGAGGAACGGGTTACAT 202
Query 273 CGGGAAATATATAGTGGAAGCGAGCGCAAGATCTGGCCACCCAACCTTAGTTCTCGTTCG 332
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 203 TGGGAAATATATAGTGGAAGCGAGCGCAAGATCTGGGCACCCAACCTTAGTTCTCGTTCG 262
Query 333 AAATTCGACGCTCACAAGCCCTTCACGATC-CTCCACCATCGAGAATTTCAAGAACCTCG 391
|||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct 263 AAATTCGACGCTCACAAGCCCTTCACGATCGAT-CACCATCGAGAATTTCAAGAATCTCG 321
Query 392 GCGTTCAGTTTCTCCTCGGAGACCTTGACGACCATACGAGTCTCGTGAATTCGATAAAGC 451
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 322 GCGTTCAGTTTCTCCTCGGAGATCTTGACGATCATACGAGTCTCGTGAATTCGATAAAGC 381
Query 452 AAGCGGATGTGGTCATCTCTACTGTTGGGCACTCCCTCTTGGGACATCAATACAAGATCA 511
|||| ||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 382 AAGCAGATGTGGTCATCTCTACGGTTGGACATTCCCTCTTGGGACATCAATACAAGATCA 441
Query 512 TCTCCGCCATTAAAGAAGCCGGTAATGTTAAGAGATTCTTTCCCTCCGAGTTTGGAAATG 571
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 442 TCTCTGCCATTAAAGAAGCCGGTAATGTTAAGAGATTCTTTCCCTCAGAGTTTGGAAATG 501
Query 572 ACGTAGACCGTGTTTTCACTGTCGAACCGGCCAAGTCAGCCTATGCTACAAAGGCCAAA- 630
| |||||||||||| | |||| ||||| ||||||||||||||||||||||||| ||||
Sbjct 502 ATGTAGACCGTGTTCACGCTGTTGAACCCGCCAAGTCAGCCTATGCTACAAAGG-CAAAT 560
Query 631 ATCCGGCGAACAATTGAGGCCGAAGGAATCCCATACACTTATGTCTCATGCAACTTCTTC 690
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 ATCCGGCGAACAATTGAAGCCGAAGGAATCCCATACACTTATGTCTCATGCAACTTCTTC 620
Query 691 GCTGGCTACTTCCTCCCAACTCTAGCTCAGCCTGGTGCTACTTCTGCTCCACGGGATAAG 750
|||||||||||||| |||||||| || |||||||| |||||||||||||| |||||||||
Sbjct 621 GCTGGCTACTTCCTTCCAACTCTGGCACAGCCTGGGGCTACTTCTGCTCCTCGGGATAAG 680
Query 751 GTCATTGTTTTAGGTGATGGGAACCC-CAAAGCTGTGTTCAACAAGGAAGAAGACATCG- 808
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 GTCATTGTTTTAGGTGAT-GGAACCCTCAAAGCTGTGTTCAACAAGGAAGAAGACATCGC 739
Query 809 GAACTTACACAATCAATGCCGTAGATGATCCAAGAACTTTGAACAAGATCTTATATATTA 868
| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 740 G-ACTTACACCATCAATGCCGTAGATGATCCAACAACTTTGAACAAGATCTTATATGTTA 798
Query 869 GGCCACCAATGAACACTTACTCATTCAATGATCTTGTCTCGCTTTGGGAGAACAAGATTG 928
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 799 GGCCACCAATGAACACTTACTCCTTCAACGATCTTGTCTCGCTTTGGGAGAACAAGATTG 858
Query 929 GCAAAACACTTGAAAGAATCTACGTTCCAGAAGAACAACTCCTCAAACAGATCATAGAAT 988
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 859 GCAAAACACTTGAAAGAATCTACGTTCCAGAAGAGCAACTCCTCAAACAGATCATAGAAT 918
Query 989 CATCACCCCCACTCAACGTGATGCTATCCCTTTGTCACTGCGTTTTCGTGAAAGGAGGAC 1048
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 CTTCGCCTCCACTCAACGTGATGCTATCCCTTTGTCACTGCGTTTTCGTGAAAGGAGGAC 978
Query 1049 ACACAAGCTTTGAAATCGAACCTTCTTTCGGGGTAGAAGCTTCTGAGCTTTACCCTGATG 1108
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 979 ACACAAGCTTTGAAATCGAACCTTCTTTTGGAGTAGAAGCTTCTGAGCTTTACCCTGATG 1038
Query 1109 TCAAATACACTACTGTTGATGAAATCCTCAACCAATATGTCTAAAGCTGAGTGCTTAACG 1168
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 1039 TCAAATACACTACTGTTGATGAAATCCTCAACCAGTATGTCTAAAGCTTAGTGCTTAACT 1098
Query 1169 A--G----A----ATGACTCTCCACAATTTGTATTTTGGGTTTTAAATAAGTGGCTA 1215
| | | ||||||||||||| ||| ||||||||||||||||||| ||||||
Sbjct 1099 ACAGTGTCACTCCATGACTCTCCACACTTTTTATTTTGGGTTTTAAATAATTGGCTA 1155
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5