BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G39235.1

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg490696 jgi|Araly1|490696|fgenesh2_kg.7__129__AT4G39235.1          638    0.0  


> Ahg490696 jgi|Araly1|490696|fgenesh2_kg.7__129__AT4G39235.1
Length=496

 Score =  638 bits (345),  Expect = 0.0
 Identities = 449/498 (90%), Gaps = 12/498 (2%)
 Strand=Plus/Plus

Query  25   CTAAACAAGTCTAGAACCTCCTCTTCTCGTTTagaagaagaagaagaagGAGACGAATTG  84
            |||||||||||||||||| |||||||| |||||| || |||||||||| || | ||| ||
Sbjct  1    CTAAACAAGTCTAGAACCGCCTCTTCTGGTTTAGGAGGAGAAGAAGAA-GA-AAGAAGTG  58

Query  85   AAAGATCTCGTAGAGGTACAAATGGAGACCCAGACAAAT-----C-AAA---GTCCGAAA  135
            |||||||| || |||| ||||||||||||||||| ||||     | |||    |||||||
Sbjct  59   AAAGATCTTGTGGAGGAACAAATGGAGACCCAGAAAAATCAAGCCGAAATCCCTCCGAAA  118

Query  136  CCGGCCATGACTTCATGTAGGAAGAAGGTAAAGGATGATGCCACTTTCTTTGAGGACGTG  195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  119  CCGGCCATGACTTCATGTAGGAAGAAGGTAAAGGATGATGCCACTTTCTTTGAGGACGTC  178

Query  196  AAAGATCACATTGATGACTTTATACATGCCTCAATGGATGAACACAAGTCCTGTTTCCAA  255
            |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||| 
Sbjct  179  AAAGATCACATTGATGACTTCATACATGCCTCCATGGATGAACACAAGACCTGTTTCCAG  238

Query  256  AAGACCATCAAAAAGATGTTTGGATTGTCAAAGGCGGTCGCAGAGAAGCAAGCTGTGGAG  315
            |||||||| || |||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct  239  AAGACCATTAAGAAGATGTTTGGATTATCAAAGGCGGTCGCAGAGAAGCAAGCTGAGGAG  298

Query  316  GCAAAGGGAGTCGAGAGTCAATTGCCTCTTCAGACGACAGTCTCGGAGTAAAGACTAGCT  375
            ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
Sbjct  299  GCAAAGGGAGTCGAGAGTCAATTGCCTCTTCAGACGACAGTGTCAGAGTAAAGACTAGTT  358

Query  376  TCTTTCCTTCTGCGTTTGATGTCGTTTCTCTTGTTTAACATCACATATAAGTTTCTTTGT  435
            |||||||  ||| ||||||||||||||||||||||||| |||||||  ||||||||||||
Sbjct  359  TCTTTCCAGCTGGGTTTGATGTCGTTTCTCTTGTTTAAAATCACATCCAAGTTTCTTTGT  418

Query  436  AAATCAACTTTTCCGACCTA-GAGACCAGATTTGAATTCAAACATTTCAAATGTTATTGG  494
            |||| |||||||| |||||| || || |||||  |||||||||||| |||||||||||||
Sbjct  419  AAATTAACTTTTCTGACCTAAGAAACAAGATTAAAATTCAAACATTCCAAATGTTATTGG  478

Query  495  TTTGATCTTTGTTAAACA  512
            |||||||||||| |||||
Sbjct  479  TTTGATCTTTGTCAAACA  496



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19840906280


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5