BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G39250.1

Length=303
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg943897 jgi|Araly1|943897|scaffold_700126.1                        512    5e-145


> Ahg943897 jgi|Araly1|943897|scaffold_700126.1
Length=348

 Score =  512 bits (277),  Expect = 5e-145
 Identities = 293/301 (97%), Gaps = 0/301 (0%)
 Strand=Plus/Plus

Query  1    ATGGCATCAAGCTCAATGTCTTCTCAGAGCTCTGGCTCGTGGACTGCTAAGCAGAACAAA  60
            |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct  26   ATGGCATCAAGCTCAATGTCTTCTCACAGCTCTGGCTCGTGGACCGCTAAGCAGAACAAA  85

Query  61   GCCTTTGAGCAGGCTCTAGCAACCTATGACCAGGACACTCCTAACCGTTGGCAAAATGTT  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  86   GCCTTTGAGCAGGCTCTAGCAACCTATGACCAGGACACTCCTAACCGTTGGCAAAATGTT  145

Query  121  GCCAAAGTCGTGGGTGGAAAAACAACAGAGGAGGTAAAGAGACACTACGAACTCTTAGTG  180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  146  GCCAAAGTCGTGGGTGGAAAAACAACAGAGGAGGTAAAGAGACACTACGAACTCCTAGTG  205

Query  181  CAAGACATCAACAGCATAGAGAACGGTCATGTTCCATTCCCAAACTACAGGACTAGTGGA  240
            ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  206  CAAGATATCAACAACATAGAGAACGGTCATGTTCCATTCCCAAACTACAGAACTAGTGGA  265

Query  241  GGCTGCACTAATGGCAGGCTTAGTCAGGAGGAAAAAAGGATGAGAAACATGAGGCTGCAG  300
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  266  GGCTGCACCAATGGCAGGCTTAGTCAGGAGGAAAAAAGGATGAGAAACATGAGGATGCAG  325

Query  301  T  301
            |
Sbjct  326  T  326



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10645409331


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5