BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G39260.1
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
Ahg490700 jgi|Araly1|490700|fgenesh2_kg.7__133__AT4G39260.1 760 0.0
Ahg481034 jgi|Araly1|481034|fgenesh2_kg.4__94__AT2G21660.2 265 5e-70
> Ahg490700 jgi|Araly1|490700|fgenesh2_kg.7__133__AT4G39260.1
Length=788
Score = 760 bits (411), Expect = 0.0
Identities = 713/846 (84%), Gaps = 71/846 (8%)
Strand=Plus/Plus
Query 8 GTTATTACGTCACACCTGTTCTATAAATTAAGGCTGCGTCTTATCA-CCTCAAATCACAT 66
||||||||||||||||| |||||||||||||||||||||||||||| || ||||||| |
Sbjct 1 GTTATTACGTCACACCTCTTCTATAAATTAAGGCTGCGTCTTATCATCC-CAAATCATAC 59
Query 67 AAGTCTCTCTCTTACATTTTGAAACCCTAATTTCTCTTCTTTTCCCCaaaaaaaaaTGTC 126
||||||||||| | | | | | || | ||| ||| |||||||||||||
Sbjct 60 AAGTCTCTCTC-T-C----T------C--A-TT-T-TTCGAAACCCTAAAAAAAAATGTC 102
Query 127 TGAAGTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCA-CCAATGATGAAGATC 185
||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||
Sbjct 103 AGAAGTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCCAA-GATCAAGATC 161
Query 186 TTCAAAGGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGATCATTAACGACCGCG 245
| ||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||
Sbjct 162 TAGAAAGGACCTTCTCACAATTCGGCGACGTTCTCGATTCTAAGATCATTAACGATCGCG 221
Query 246 AGAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGG 305
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 AGACTGGAAGGTCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGG 281
Query 306 ATGCGATTGAAGAGATGAACGGTAAAGAGCTCGATGGACGTGTCATCACCGTGAACGAGG 365
| |||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 282 ACGCGATTGAGGAGATGAACGGAAAAGAGCTCGATGGACGTACCATCACCGTGAACGAGG 341
Query 366 CTCAGTCGAGAGGTAGCGGCGGTGGCGGAGGAGGCCGTGGTGGAAGCGGTGGTGGTTACC 425
| ||||| ||||||||||||||||| |||||||||||| || | || ||||||||||
Sbjct 342 CACAGTCAAGAGGTAGCGGCGGTGG---AGGAGGCCGTGGAGGCGGTGGAGGTGGTTACC 398
Query 426 GCAGCGGAGGCGGTGGTGGATACTCAGGAGGCGGTGGCGGCGGATACTCAGGAGGAGGCG 485
|||||||||||||||| |||||| |||||| ||||| || ||| || || | |
Sbjct 399 GCAGCGGAGGCGGTGGCGGATACGGAGGAGGAGGTGGTGGT---TACG-AG-AG-ACGTA 452
Query 486 GTGGTGGTTACGAGAGACGTAGCGGAGGTTACGGATCTGGTGGAGGCGGTGGTGGCCGAG 545
|||| ||||||| || | | | ||||| ||| | ||||| | || || || ||
Sbjct 453 GTGGAGGTTACG-GAT-C-TGGTGGAGG---CGG-T--GGTGGCCGAGGAGGAGG---AG 500
Query 546 GATACGGTGGTGGTGGA---CGCCGTGAGGGAGGTGGCTACGGAGGCGGTGATGGTGGAA 602
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||
Sbjct 501 GATACGGTGGTGGTGGTGGTCGCCGTGAGGGAGGTGGCTACGGAGGAGGTGACGGTGGAA 560
Query 603 GTTACGGAGG---CGGTGGTGGCGGCTGGTAATCAAAGATAGAGTTGTTTGCGTGCTGCT 659
|||||||||| |||||| || ||||||||||||||||| | | | | | |
Sbjct 561 GTTACGGAGGAAGCGGTGGAGGTGGCTGGTAATCAAAGAT----T-G----C---C-GAT 607
Query 660 GCTCTGTTTTTGGTTTAGATTTGGTTTTGTGTCACCACTT--CT--GGTTTGGTTATCGT 715
|| ||||||||||||||||||||||||||||||| || || ||||||||||||||
Sbjct 608 -CT--GTTTTTGGTTTAGATTTGGTTTTGTGTCACCGTTTGTCTCTGGTTTGGTTATCGT 664
Query 716 TCGTTTGGTTTACTTTTTTGATGAAACAGTTTCGTTTAA-GTCTTCTTTGTCTGGAACGA 774
|||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||
Sbjct 665 TCGTTTGGTTTACTTTTTTGATGAAACA-TATCGTTTAAAGTCTTCTTTGTCTGGAACGA 723
Query 775 AATGTTAATTCGCGTGTTGTTTACTAAATTTATAACGTTTCCTTTTAACCAGATTCGAGA 834
||||||||||||||||||||| |||||||| |||| ||||||| ||||||||||| ||||
Sbjct 724 AATGTTAATTCGCGTGTTGTTCACTAAATT-ATAAGGTTTCCTCTTAACCAGATTTGAGA 782
Query 835 TTTTCC 840
||||||
Sbjct 783 TTTTCC 788
> Ahg481034 jgi|Araly1|481034|fgenesh2_kg.4__94__AT2G21660.2
Length=671
Score = 265 bits (143), Expect = 5e-70
Identities = 239/283 (84%), Gaps = 16/283 (6%)
Strand=Plus/Plus
Query 131 GTTGAGTACCGGTGCTTTGTCGGCGGCCTTGCCTGGGCCACCAATGATGA-AGA--TCTT 187
||||||||||||||||| || || || || || ||||||| | |||||| ||| ||||
Sbjct 38 GTTGAGTACCGGTGCTTCGTTGGAGGTCTAGCTTGGGCCA-C--TGATGACAGAGCTCTT 94
Query 188 CAAA-GGACGTTCTCACAGTTCGGCGACGTTATCGATTCTAAGATCATTAACGACCGCGA 246
||| | | ||||| || | |||||||||| | ||||| |||||||||||||| || ||
Sbjct 95 GAAACTG-CCTTCTCTCAATACGGCGACGTTGTTGATTCCAAGATCATTAACGATCGTGA 153
Query 247 GAGTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGACGAGAAAGCCATGAGGGA 306
|| ||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||
Sbjct 154 GACTGGAAGATCAAGGGGATTCGGATTCGTCACCTTCAAGGATGAGAAATCCATGAAGGA 213
Query 307 TGCGATTGAAGAGA-TGAACGGTA-AAGAGCTCGATGGACGT-GTCATCACCGTGAACGA 363
||||||||||| || ||||||| | ||||||||||||||||| | |||||| || |||||
Sbjct 214 TGCGATTGAAG-GAATGAACGG-ACAAGAGCTCGATGGACGTAG-CATCACTGTTAACGA 270
Query 364 GGCTCAGTCGA-GAGGTAGCGGCGGTGGCGGAGGAGGCCGTGG 405
||||||||| | |||| |||||||| || || || ||||||||
Sbjct 271 GGCTCAGTC-ACGAGGAAGCGGCGGCGGAGGCGGCGGCCGTGG 312
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33281306541
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5